Experiment set4IT059 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with syringaldehyde 5 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.1 -3.6 peroxidase compare
AO353_25925 -2.8 -3.4 hypothetical protein compare
AO353_06415 -2.4 -5.8 hypothetical protein compare
AO353_05145 -2.4 -7.0 ABC transporter permease compare
AO353_22810 -2.3 -2.0 hypothetical protein compare
AO353_00825 -2.3 -4.7 porin compare
AO353_07355 -2.3 -5.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_21625 -2.2 -3.2 Fe/S biogenesis protein NfuA compare
AO353_03795 -2.1 -5.1 fumarate hydratase compare
AO353_12500 -2.1 -2.7 shikimate kinase compare
AO353_13100 -2.1 -2.1 GTPase RsgA compare
AO353_18540 -2.1 -3.0 pseudouridine synthase compare
AO353_14220 -2.0 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_08880 -2.0 -2.9 exopolyphosphatase compare
AO353_17300 -1.9 -6.9 antibiotic transporter compare
AO353_05150 -1.8 -5.6 ABC transporter ATP-binding protein compare
AO353_04175 -1.8 -4.8 glycerol uptake facilitator GlpF compare
AO353_11770 -1.8 -2.3 molecular chaperone Hsp33 compare
AO353_12935 -1.8 -4.2 glycosyltransferase compare
AO353_17290 -1.8 -6.1 multidrug transporter compare
AO353_09000 -1.8 -5.3 argininosuccinate lyase compare
AO353_14940 -1.7 -4.1 malate:quinone oxidoreductase compare
AO353_08165 -1.7 -3.3 pyrroline-5-carboxylate reductase compare
AO353_03360 -1.7 -7.5 glucose-6-phosphate dehydrogenase compare
AO353_05140 -1.7 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12345 -1.6 -2.3 twin-arginine protein translocation system subunit TatC compare
AO353_22280 -1.6 -3.2 hypothetical protein compare
AO353_09890 -1.6 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_15185 -1.6 -5.5 ATPase compare
AO353_17295 -1.5 -12.0 multidrug transporter compare
AO353_11730 -1.5 -7.8 glutamate--cysteine ligase compare
AO353_09250 -1.5 -3.0 exodeoxyribonuclease III compare
AO353_16805 -1.5 -5.6 recombinase RecA compare
AO353_11165 -1.5 -8.5 hypothetical protein compare
AO353_27950 -1.5 -2.7 hypothetical protein compare
AO353_12915 -1.5 -6.9 carbamoyltransferase compare
AO353_09905 -1.5 -8.1 phosphate-binding protein compare
AO353_03615 -1.5 -3.3 cold-shock protein compare
AO353_00495 -1.4 -2.2 DNA topoisomerase I compare
AO353_06045 -1.4 -5.9 exodeoxyribonuclease V subunit beta compare
AO353_05420 -1.4 -2.0 peptide chain release factor 3 compare
AO353_27650 -1.4 -4.1 cell division protein FtsK compare
AO353_05135 -1.4 -7.2 toluene tolerance protein compare
AO353_08265 -1.4 -5.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_00330 -1.4 -6.4 hypothetical protein compare
AO353_05690 -1.3 -3.4 SsrA-binding protein compare
AO353_02250 -1.3 -2.7 chorismate synthase compare
AO353_03420 -1.3 -4.0 phosphogluconate dehydratase compare
AO353_14775 -1.3 -5.6 hypothetical protein compare
AO353_10445 -1.3 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_15465 -1.3 -5.1 cytochrome C oxidase compare
AO353_00650 -1.3 -2.4 cytochrome biogenesis protein compare
AO353_10670 -1.2 -6.0 shikimate dehydrogenase compare
AO353_18890 -1.2 -4.1 cytochrome C compare
AO353_12105 -1.2 -5.5 peptidase S41 compare
AO353_26835 -1.2 -3.1 transcriptional regulator compare
AO353_13920 -1.2 -2.5 dihydroxyacetone kinase compare
AO353_10455 -1.2 -1.7 tRNA modification GTPase MnmE compare
AO353_14115 -1.2 -5.4 gamma-glutamyl kinase compare
AO353_16940 -1.2 -4.6 deoxycytidine triphosphate deaminase compare
AO353_09040 -1.2 -1.9 diaminopimelate epimerase compare
AO353_09240 -1.2 -2.5 acetylglutamate kinase compare
AO353_13160 -1.2 -2.1 membrane protease HflC compare
AO353_02000 -1.1 -3.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_12880 -1.1 -2.3 ADP-heptose--LPS heptosyltransferase compare
AO353_07610 -1.1 -1.3 hypothetical protein compare
AO353_06795 -1.1 -2.1 Isochorismatase compare
AO353_07155 -1.1 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02070 -1.1 -5.1 prephenate dehydratase compare
AO353_26550 -1.1 -1.9 hypothetical protein compare
AO353_06585 -1.1 -5.0 hypothetical protein compare
AO353_02220 -1.1 -1.9 hypothetical protein compare
AO353_12930 -1.1 -3.0 GlcNAc-PI de-N-acetylase compare
AO353_16440 -1.1 -2.9 ArsC family transcriptional regulator compare
AO353_09315 -1.1 -6.3 LysR family transcriptional regulator compare
AO353_01795 -1.1 -2.3 hypothetical protein compare
AO353_14495 -1.1 -6.5 acetolactate synthase 3 catalytic subunit compare
AO353_25160 -1.1 -3.0 ABC transporter substrate-binding protein compare
AO353_14400 -1.1 -3.3 Fis family transcriptional regulator compare
AO353_11750 -1.1 -2.1 ATPase compare
AO353_09900 -1.1 -7.0 phosphate ABC transporter permease compare
AO353_12945 -1.0 -5.8 toluene tolerance protein compare
AO353_10930 -1.0 -5.5 DNA polymerase I compare
AO353_06850 -1.0 -3.6 MFS transporter compare
AO353_22500 -1.0 -1.0 hypothetical protein compare
AO353_04520 -1.0 -4.1 elongation factor 4 compare
AO353_27720 -1.0 -3.1 cupin compare
AO353_12350 -1.0 -2.6 preprotein translocase compare
AO353_06495 -1.0 -3.3 gamma-glutamyl phosphate reductase compare
AO353_16810 -1.0 -3.0 recombinase RecX compare
AO353_26220 -1.0 -2.4 hypothetical protein compare
AO353_15875 -1.0 -3.9 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_15445 -1.0 -2.7 disulfide bond formation protein B compare
AO353_00835 -1.0 -4.5 transporter compare
AO353_04355 -1.0 -1.6 homoserine dehydrogenase compare
AO353_04340 -1.0 -2.4 hypothetical protein compare
AO353_11340 -1.0 -1.6 MarR family transcriptional regulator compare
AO353_03585 -1.0 -1.8 ATP-dependent DNA helicase RuvA compare
AO353_10945 -1.0 -2.0 cytochrome C compare
AO353_13200 -1.0 -6.5 exoribonuclease R compare
AO353_12420 -1.0 -2.6 predicted FeS cluster maintenance protein (from data) compare
AO353_20170 -1.0 -3.3 trigger factor compare
AO353_02190 -0.9 -6.6 hypothetical protein compare
AO353_09320 -0.9 -5.9 ATP-dependent DNA helicase RecG compare
AO353_01410 -0.9 -2.3 ribonuclease E compare
AO353_13395 -0.9 -2.1 protein hupE compare
AO353_12115 -0.9 -1.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08115 -0.9 -4.2 energy transducer TonB compare
AO353_08685 -0.9 -4.8 N-acetylglutamate synthase compare
AO353_26045 -0.9 -1.7 hypothetical protein compare
AO353_08110 -0.9 -4.1 glutathione synthetase compare
AO353_19085 -0.9 -2.3 organic hydroperoxide resistance protein compare
AO353_03710 -0.9 -1.8 formyltetrahydrofolate deformylase compare
AO353_23720 -0.9 -2.7 BatB protein compare
AO353_25640 -0.9 -2.1 AsnC family transcriptional regulator compare
AO353_18560 -0.9 -1.2 class I peptide chain release factor compare
AO353_00310 -0.9 -5.1 transaldolase compare
AO353_15900 -0.9 -1.8 GTP-binding protein compare
AO353_05130 -0.9 -1.0 anti-anti-sigma factor compare
AO353_10950 -0.9 -5.8 thiol:disulfide interchange protein compare
AO353_13225 -0.9 -2.1 50S ribosomal protein L9 compare
AO353_03715 -0.9 -1.4 H-NS histone compare
AO353_20340 -0.9 -2.4 gamma-carboxygeranoyl-CoA hydratase compare
AO353_03580 -0.9 -2.3 ATP-dependent DNA helicase RuvB compare
AO353_04810 -0.9 -1.3 hypothetical protein compare
AO353_07315 -0.9 -1.9 rRNA methyltransferase compare
AO353_27695 -0.8 -4.2 isocitrate dehydrogenase compare
AO353_09265 -0.8 -1.7 hypothetical protein compare
AO353_18780 -0.8 -3.8 cobyrinic acid a,c-diamide synthase compare
AO353_09895 -0.8 -4.8 phosphate ABC transporter permease compare
AO353_13925 -0.8 -2.0 XRE family transcriptional regulator compare
AO353_09720 -0.8 -1.0 hypothetical protein compare
AO353_19145 -0.8 -2.9 protease HtpX compare
AO353_20840 -0.8 -1.2 ribose pyranase compare
AO353_06725 -0.8 -1.7 hypothetical protein compare
AO353_00430 -0.8 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_24260 -0.8 -1.1 hypothetical protein compare
AO353_20510 -0.8 -1.1 amidase compare
AO353_13155 -0.8 -2.7 hypothetical protein compare
AO353_26595 -0.8 -2.5 copper resistance protein CopD compare
AO353_17370 -0.8 -3.7 phospholipase compare
AO353_24970 -0.8 -2.2 formate dehydrogenase compare
AO353_04090 -0.8 -1.7 leucyl-tRNA synthetase compare
AO353_15470 -0.8 -5.2 protoheme IX farnesyltransferase compare
AO353_18960 -0.8 -1.3 terminase compare
AO353_05240 -0.8 -1.8 rod shape-determining protein MreD compare
AO353_21430 -0.7 -1.5 hypothetical protein compare
AO353_15460 -0.7 -3.8 cytochrome o ubiquinol oxidase subunit III compare
AO353_25985 -0.7 -2.7 hypothetical protein compare
AO353_21935 -0.7 -1.2 nitrite reductase compare
AO353_03520 -0.7 -2.0 hypothetical protein compare
AO353_10925 -0.7 -3.8 hypothetical protein compare
AO353_27500 -0.7 -1.3 hypothetical protein compare
AO353_00515 -0.7 -2.1 hypothetical protein compare
AO353_10055 -0.7 -5.4 DNA helicase II compare
AO353_01915 -0.7 -0.9 GlcG protein compare
AO353_06050 -0.7 -3.4 exodeoxyribonuclease V subunit gamma compare
AO353_09860 -0.7 -5.2 histidine kinase compare
AO353_07075 -0.7 -3.0 elongation factor Tu compare
AO353_08015 -0.7 -3.7 5,10-methylenetetrahydrofolate reductase compare
AO353_13640 -0.7 -2.5 histidine kinase compare
AO353_01725 -0.7 -1.8 phosphohistidine phosphatase compare
AO353_00600 -0.7 -3.4 cytochrome C oxidase Cbb3 compare
AO353_26900 -0.7 -2.7 glycerate kinase compare
AO353_23160 -0.7 -2.7 hydrolase compare
AO353_15455 -0.7 -5.5 cytochrome o ubiquinol oxidase subunit I compare
AO353_25550 -0.7 -3.4 4-amino-4-deoxy-L-arabinose transferase compare
AO353_22375 -0.7 -2.2 cytochrome c-550 PedF compare
AO353_12950 -0.7 -4.0 polymerase compare
AO353_29355 -0.7 -2.0 hypothetical protein compare
AO353_04565 -0.7 -3.0 nucleoid-associated protein compare
AO353_13985 -0.7 -2.3 pilus assembly protein compare
AO353_00115 -0.7 -1.5 hypothetical protein compare
AO353_03815 -0.7 -1.2 heme utilization protein compare
AO353_18630 -0.7 -3.9 beta-ketoacyl-ACP synthase compare
AO353_09050 -0.7 -2.0 recombinase XerC compare
AO353_22645 -0.7 -1.4 hypothetical protein compare
AO353_00635 -0.6 -1.5 hypothetical protein compare
AO353_02235 -0.6 -2.7 acireductone dioxygenase compare
AO353_02005 -0.6 -0.9 hypothetical protein compare
AO353_02940 -0.6 -1.3 DNA-binding protein compare
AO353_00620 -0.6 -1.4 cytochrome C oxidase Cbb3 compare
AO353_22265 -0.6 -2.7 LysR family transcriptional regulator compare
AO353_12110 -0.6 -3.7 peptidase M23 compare
AO353_19360 -0.6 -1.4 peroxiredoxin compare
AO353_24060 -0.6 -3.8 AcrR family transcriptional regulator compare
AO353_20770 -0.6 -2.5 hypothetical protein compare
AO353_23215 -0.6 -1.5 calpastatin compare
AO353_01220 -0.6 -1.1 hypothetical protein compare
AO353_22980 -0.6 -2.3 hypothetical protein compare
AO353_12130 -0.6 -2.7 preprotein translocase subunit SecB compare
AO353_01690 -0.6 -3.1 hypothetical protein compare
AO353_19610 -0.6 -1.8 hypothetical protein compare
AO353_04360 -0.6 -3.2 protein-disulfide isomerase compare
AO353_26210 -0.6 -2.0 hypothetical protein compare
AO353_08975 -0.6 -2.9 heme biosynthesis protein HemY compare
AO353_22735 -0.6 -1.8 hypothetical protein compare
AO353_06275 -0.6 -1.8 DNA polymerase III subunit epsilon compare
AO353_23620 -0.6 -1.4 hypothetical protein compare
AO353_27185 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress syringaldehyde across organisms