Experiment set4IT059 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 1

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -4.1 -2.8 Phosphoserine phosphatase compare
Xcc-8004.1336.1 -3.6 -6.8 two-component system sensor protein compare
Xcc-8004.4286.1 -3.5 -6.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.4824.1 -3.5 -13.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.884.1 -3.0 -6.4 Rod shape-determining protein MreD compare
Xcc-8004.1241.1 -2.8 -4.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.5192.1 -2.7 -10.9 hypothetical protein compare
Xcc-8004.5193.1 -2.7 -16.6 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2921.1 -2.6 -3.0 ferrous iron transport protein compare
Xcc-8004.1236.1 -2.5 -5.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1763.1 -2.4 -3.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3433.1 -2.2 -7.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.3346.1 -2.2 -2.6 hypothetical protein compare
Xcc-8004.3794.1 -2.2 -2.3 Mobile element protein compare
Xcc-8004.2406.1 -2.2 -9.8 Manganese transport protein MntH compare
Xcc-8004.271.1 -2.1 -3.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3395.1 -2.0 -3.6 Transcriptional regulator, GntR family compare
Xcc-8004.4225.1 -2.0 -2.6 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.3939.1 -2.0 -3.5 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.2922.1 -2.0 -2.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1727.1 -1.9 -3.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4112.1 -1.9 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2217.1 -1.9 -3.9 FIG01209779: hypothetical protein compare
Xcc-8004.2266.1 -1.8 -2.4 FIG01211351: hypothetical protein compare
Xcc-8004.4732.1 -1.8 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.4616.1 -1.8 -7.2 Sensor histidine kinase compare
Xcc-8004.4948.1 -1.8 -2.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.2335.1 -1.7 -5.5 Transport ATP-binding protein CydC compare
Xcc-8004.1282.1 -1.7 -5.2 sulfur deprivation response regulator compare
Xcc-8004.1511.1 -1.7 -3.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.5205.1 -1.6 -3.4 FIG01210461: hypothetical protein compare
Xcc-8004.4457.1 -1.6 -4.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4620.1 -1.6 -7.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4737.1 -1.6 -4.4 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.1871.1 -1.6 -2.7 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.907.1 -1.5 -8.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.4510.1 -1.5 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.559.1 -1.5 -1.9 FIG01213048: hypothetical protein compare
Xcc-8004.4200.1 -1.5 -2.0 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1436.1 -1.4 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.1359.1 -1.4 -5.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2920.1 -1.4 -6.3 Ferrous iron transport protein B compare
Xcc-8004.4738.1 -1.4 -7.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.171.1 -1.4 -1.7 hypothetical protein compare
Xcc-8004.495.1 -1.4 -4.5 EpiH/GdmH-related protein compare
Xcc-8004.4596.1 -1.4 -7.1 hypothetical protein compare
Xcc-8004.4788.1 -1.3 -1.3 FIG01210406: hypothetical protein compare
Xcc-8004.2346.1 -1.3 -1.8 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3726.1 -1.3 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1205.1 -1.3 -1.9 hypothetical protein compare
Xcc-8004.2334.1 -1.2 -5.0 Transport ATP-binding protein CydD compare
Xcc-8004.4630.1 -1.2 -2.6 FIG01210108: hypothetical protein compare
Xcc-8004.3898.1 -1.2 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.3612.1 -1.2 -1.3 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.689.1 -1.2 -1.5 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4039.1 -1.2 -2.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.130.1 -1.2 -4.9 hypothetical protein compare
Xcc-8004.2339.1 -1.2 -1.9 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.4102.1 -1.2 -1.8 FIG01211949: hypothetical protein compare
Xcc-8004.2386.1 -1.2 -8.2 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1772.1 -1.2 -2.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4025.1 -1.2 -6.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3230.1 -1.1 -2.3 Phage DNA invertase compare
Xcc-8004.2672.1 -1.1 -1.9 hypothetical protein compare
Xcc-8004.1787.1 -1.1 -3.2 Hydrolase, carbon-nitrogen family compare
Xcc-8004.4464.1 -1.1 -5.7 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.3803.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.3752.1 -1.1 -1.0 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4481.1 -1.1 -4.7 hypothetical protein compare
Xcc-8004.1790.1 -1.1 -2.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.4776.1 -1.1 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.1841.1 -1.1 -2.6 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.1566.1 -1.1 -2.1 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.2110.1 -1.1 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4945.1 -1.1 -1.0 FIG01210349: hypothetical protein compare
Xcc-8004.2212.1 -1.1 -2.8 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.4026.1 -1.0 -4.4 FIG01209666: hypothetical protein compare
Xcc-8004.1208.1 -1.0 -3.4 Glucarate dehydratase (EC 4.2.1.40) compare
Xcc-8004.1660.1 -1.0 -1.1 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.2385.1 -1.0 -6.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.323.1 -1.0 -1.9 FIG01210738: hypothetical protein compare
Xcc-8004.48.1 -1.0 -1.6 FIG01212903: hypothetical protein compare
Xcc-8004.1118.1 -1.0 -1.5 hypothetical protein compare
Xcc-8004.1027.1 -1.0 -1.3 Two-component system sensor protein compare
Xcc-8004.2561.1 -1.0 -4.8 FIG01213638: hypothetical protein compare
Xcc-8004.3049.1 -1.0 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3394.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.4957.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.234.1 -1.0 -5.6 cardiolipin synthase compare
Xcc-8004.3431.1 -1.0 -1.7 DNA repair protein RecN compare
Xcc-8004.914.1 -0.9 -4.1 tail-specific protease compare
Xcc-8004.4298.1 -0.9 -3.0 Hemin uptake protein compare
Xcc-8004.638.1 -0.9 -5.1 Bacterioferritin compare
Xcc-8004.1491.1 -0.9 -6.7 Glycosyltransferase compare
Xcc-8004.3310.1 -0.9 -2.8 Chromosome partition protein smc compare
Xcc-8004.4517.1 -0.9 -5.7 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.4529.1 -0.9 -1.3 FIG01210979: hypothetical protein compare
Xcc-8004.4000.1 -0.9 -1.9 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3855.1 -0.9 -4.4 FIG01209965: hypothetical protein compare
Xcc-8004.3863.1 -0.9 -2.8 Septum site-determining protein MinD compare
Xcc-8004.4486.1 -0.9 -6.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.456.1 -0.9 -1.2 carbonic anhydrase, family 3 compare
Xcc-8004.1906.1 -0.9 -2.4 lipoprotein compare
Xcc-8004.589.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.968.1 -0.9 -5.0 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.3663.1 -0.9 -1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4210.1 -0.9 -3.1 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4514.1 -0.9 -6.2 Glycosyltransferase compare
Xcc-8004.1003.1 -0.9 -1.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.4465.1 -0.9 -2.7 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.3374.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.403.1 -0.9 -2.9 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.2734.1 -0.9 -3.1 Mlr7403 protein compare
Xcc-8004.1486.1 -0.8 -2.0 Coenzyme PQQ synthesis protein D compare
Xcc-8004.983.1 -0.8 -1.5 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.5343.1 -0.8 -3.6 hypothetical protein compare
Xcc-8004.574.1 -0.8 -3.7 Di-/tripeptide transporter compare
Xcc-8004.5367.1 -0.8 -3.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.2332.1 -0.8 -3.4 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4976.1 -0.8 -5.7 hypothetical protein compare
Xcc-8004.4473.1 -0.8 -6.4 FIG01212400: hypothetical protein compare
Xcc-8004.3923.1 -0.8 -1.8 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1587.1 -0.8 -1.6 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.3722.1 -0.8 -1.0 HrpB7 protein compare
Xcc-8004.1521.1 -0.8 -0.9 FIG01209895: hypothetical protein compare
Xcc-8004.5202.1 -0.8 -2.4 Twin-arginine translocation protein TatC compare
Xcc-8004.3696.1 -0.8 -2.1 hypothetical protein compare
Xcc-8004.2387.1 -0.8 -1.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3660.1 -0.8 -2.2 Cold shock protein CspD compare
Xcc-8004.463.1 -0.8 -1.6 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-) compare
Xcc-8004.3676.1 -0.8 -1.9 Translation elongation factor LepA compare
Xcc-8004.270.1 -0.8 -3.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3882.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.4703.1 -0.8 -3.6 FIG01209878: hypothetical protein compare
Xcc-8004.741.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.108.1 -0.8 -2.2 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.4485.1 -0.8 -3.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.2168.1 -0.8 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.4671.1 -0.8 -2.3 FIG01212254: hypothetical protein compare
Xcc-8004.5368.1 -0.8 -1.7 FIG01210868: hypothetical protein compare
Xcc-8004.637.1 -0.8 -3.5 Bacterioferritin-associated ferredoxin compare
Xcc-8004.3687.1 -0.7 -2.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.3834.1 -0.7 -2.6 Pathogenicity-related protein compare
Xcc-8004.4373.1 -0.7 -2.1 LppC putative lipoprotein compare
Xcc-8004.2952.1 -0.7 -3.6 transcriptional regulator, Crp/Fnr family compare
Xcc-8004.1581.1 -0.7 -6.5 hypothetical protein compare
Xcc-8004.4168.1 -0.7 -2.2 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.4423.1 -0.7 -0.9 General secretion pathway protein N compare
Xcc-8004.1305.1 -0.7 -3.0 FIG01212099: hypothetical protein compare
Xcc-8004.1615.1 -0.7 -1.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4739.1 -0.7 -2.2 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1372.1 -0.7 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.930.1 -0.7 -3.9 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.5185.1 -0.7 -1.2 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.5122.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.5363.1 -0.7 -1.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.1941.1 -0.7 -2.4 Transcription elongation factor GreB compare
Xcc-8004.4431.1 -0.7 -2.8 General secretion pathway protein F compare
Xcc-8004.5297.1 -0.7 -2.0 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.2333.1 -0.7 -3.8 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4775.1 -0.7 -3.6 Cell division protein FtsX compare
Xcc-8004.1657.1 -0.7 -1.5 PTS system, mannose-specific IIA component compare
Xcc-8004.679.1 -0.7 -1.1 23Sr RNA gene compare
Xcc-8004.846.1 -0.7 -1.5 Protein of unknown function DUF484 compare
Xcc-8004.2160.1 -0.7 -2.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Xcc-8004.3536.1 -0.7 -2.6 FIG01210913: hypothetical protein compare
Xcc-8004.165.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.4508.1 -0.7 -3.3 Kinase compare
Xcc-8004.1228.1 -0.6 -3.3 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.2086.1 -0.6 -1.0 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.3861.1 -0.6 -2.7 FIG01210504: hypothetical protein compare
Xcc-8004.4545.1 -0.6 -2.1 Lactoylglutathione lyase (EC 4.4.1.5) compare
Xcc-8004.4877.1 -0.6 -5.6 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2011.1 -0.6 -1.2 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2949.1 -0.6 -1.0 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.4228.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.4092.1 -0.6 -3.7 FIG01209901: hypothetical protein compare
Xcc-8004.950.1 -0.6 -0.8 General secretion pathway protein L compare
Xcc-8004.5365.1 -0.6 -3.0 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.29.1 -0.6 -3.0 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.4507.1 -0.6 -2.1 Glycosyltransferase compare
Xcc-8004.4467.1 -0.6 -2.8 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.3884.1 -0.6 -1.9 Catalase (EC 1.11.1.6) compare
Xcc-8004.2563.1 -0.6 -1.3 FIG01210540: hypothetical protein compare
Xcc-8004.745.1 -0.6 -1.7 VirP protein compare
Xcc-8004.4503.1 -0.6 -2.3 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3759.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.1654.1 -0.6 -1.1 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.1108.1 -0.6 -1.4 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3598.1 -0.6 -2.6 Ferredoxin II compare
Xcc-8004.2139.1 -0.6 -2.3 FIG01213750: hypothetical protein compare
Xcc-8004.3013.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.259.1 -0.6 -3.1 FIG01209938: hypothetical protein compare
Xcc-8004.4761.1 -0.6 -2.0 FIG01211042: hypothetical protein compare
Xcc-8004.3253.1 -0.6 -1.7 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.2228.1 -0.6 -2.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.659.1 -0.6 -1.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2574.1 -0.6 -1.0 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.4065.1 -0.6 -2.8 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.4752.1 -0.6 -0.7 DNA topoisomerase I (EC 5.99.1.2) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms