Experiment set4IT059 for Pseudomonas fluorescens SBW25-INTG

Compare to:

no extra nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -6.0 -4.1 S41 family peptidase compare
PFLU_RS03645 -5.9 -9.0 tetratricopeptide repeat protein compare
PFLU_RS14550 -4.9 -4.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28695 -4.4 -6.8 phosphoglycerate dehydrogenase compare
PFLU_RS26545 -4.2 -13.5 sel1 repeat family protein compare
PFLU_RS02050 -4.1 -16.6 NAD(P)-binding protein compare
PFLU_RS01685 -4.1 -4.8 nitrogen regulation protein NR(I) compare
PFLU_RS25760 -3.9 -12.8 glucose-6-phosphate isomerase compare
PFLU_RS24125 -3.9 -4.6 cold-shock protein compare
PFLU_RS01690 -3.7 -8.9 nitrogen regulation protein NR(II) compare
PFLU_RS28645 -3.7 -17.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22095 -3.6 -20.1 GTP diphosphokinase compare
PFLU_RS04070 -3.5 -4.2 peptide chain release factor 3 compare
PFLU_RS24485 -3.5 -15.3 hypothetical protein compare
PFLU_RS29095 -3.5 -24.5 polyphosphate kinase 1 compare
PFLU_RS02045 -3.5 -23.2 glutamate synthase large subunit compare
PFLU_RS21360 -3.3 -3.0 MarR family transcriptional regulator compare
PFLU_RS23070 -3.2 -1.9 50S ribosomal protein L32 compare
PFLU_RS02490 -3.2 -14.1 phosphoserine phosphatase SerB compare
PFLU_RS23590 -3.2 -3.5 gluconokinase compare
PFLU_RS12980 -3.2 -9.7 nitrite/sulfite reductase compare
PFLU_RS22595 -3.0 -4.1 OmpA family protein compare
PFLU_RS21495 -3.0 -2.1 TlpA family protein disulfide reductase compare
PFLU_RS24330 -2.9 -6.5 phosphogluconate dehydratase compare
PFLU_RS18505 -2.9 -11.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29880 -2.8 -13.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12975 -2.7 -6.2 DUF934 domain-containing protein compare
PFLU_RS28650 -2.7 -8.9 RNA pyrophosphohydrolase compare
PFLU_RS09055 -2.7 -4.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS22740 -2.7 -7.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS01965 -2.7 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS29875 -2.6 -15.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS23065 -2.5 -10.5 phosphate acyltransferase PlsX compare
PFLU_RS26770 -2.5 -12.1 DedA family protein compare
PFLU_RS23310 -2.5 -9.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS29885 -2.4 -10.0 LysR family transcriptional regulator compare
PFLU_RS25735 -2.4 -8.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS16710 -2.3 -4.3 nitrite reductase small subunit NirD compare
PFLU_RS13540 -2.2 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22105 -2.2 -5.5 cysteine synthase CysM compare
PFLU_RS18645 -2.2 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS09980 -2.2 -14.5 peptidase S41 compare
PFLU_RS04440 -2.1 -9.7 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS23305 -2.1 -10.2 arginine N-succinyltransferase compare
PFLU_RS13120 -2.1 -1.8 hypothetical protein compare
PFLU_RS24090 -2.1 -2.8 Holliday junction branch migration protein RuvA compare
PFLU_RS19165 -2.1 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS06265 -2.1 -15.3 [protein-PII] uridylyltransferase compare
PFLU_RS04430 -2.1 -7.8 ATP-binding cassette domain-containing protein compare
PFLU_RS04415 -2.1 -3.7 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS26640 -2.0 -11.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS07785 -2.0 -10.5 VacJ family lipoprotein compare
PFLU_RS24085 -2.0 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS08505 -2.0 -7.0 protease HtpX compare
PFLU_RS01610 -2.0 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS03610 -2.0 -6.3 redox-regulated ATPase YchF compare
PFLU_RS04945 -2.0 -2.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS24095 -2.0 -2.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS08155 -2.0 -4.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25225 -1.9 -8.7 disulfide bond formation protein B compare
PFLU_RS13370 -1.9 -1.9 DUF2790 domain-containing protein compare
PFLU_RS04445 -1.9 -6.5 ABC transporter substrate-binding protein compare
PFLU_RS25920 -1.8 -2.4 outer membrane protein assembly factor BamE compare
PFLU_RS06320 -1.8 -2.8 OmpH family outer membrane protein compare
PFLU_RS18530 -1.8 -4.7 DNA translocase FtsK compare
PFLU_RS04465 -1.8 -7.6 ATP phosphoribosyltransferase compare
PFLU_RS04435 -1.8 -6.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS26735 -1.8 -8.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS21240 -1.8 -2.0 hypothetical protein compare
PFLU_RS11475 -1.8 -1.4 histidine kinase compare
PFLU_RS02460 -1.7 -10.3 alpha/beta fold hydrolase compare
PFLU_RS14430 -1.7 -2.7 arsenate reductase ArsC compare
PFLU_RS24765 -1.7 -12.9 2-isopropylmalate synthase compare
PFLU_RS23725 -1.7 -10.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS18670 -1.7 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS14820 -1.7 -4.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS20580 -1.7 -10.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS03665 -1.7 -5.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS26595 -1.7 -1.9 lipoprotein compare
PFLU_RS05885 -1.7 -4.7 recombinase RecA compare
PFLU_RS11930 -1.7 -3.0 biopolymer transporter ExbD compare
PFLU_RS20515 -1.7 -4.1 amidophosphoribosyltransferase compare
PFLU_RS25755 -1.7 -4.1 pantoate--beta-alanine ligase compare
PFLU_RS20540 -1.7 -9.4 phosphoribosylanthranilate isomerase compare
PFLU_RS04470 -1.6 -9.6 histidinol dehydrogenase compare
PFLU_RS22070 -1.6 -4.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS29515 -1.6 -8.6 RidA family protein compare
PFLU_RS25730 -1.6 -11.9 PAS domain S-box protein compare
PFLU_RS18675 -1.6 -1.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS05780 -1.6 -9.3 helix-turn-helix transcriptional regulator compare
PFLU_RS03970 -1.6 -8.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS07650 -1.6 -10.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS14810 -1.6 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS28690 -1.6 -9.8 FAD-binding oxidoreductase compare
PFLU_RS09305 -1.6 -11.3 hypothetical protein compare
PFLU_RS22030 -1.6 -3.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS07495 -1.5 -2.0 DUF2892 domain-containing protein compare
PFLU_RS27365 -1.5 -7.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS02590 -1.5 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28725 -1.5 -9.3 DUF2059 domain-containing protein compare
PFLU_RS04565 -1.5 -1.5 TMEM165/GDT1 family protein compare
PFLU_RS22395 -1.5 -3.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS05630 -1.5 -1.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01960 -1.5 -1.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS16715 -1.5 -7.7 nitrite reductase large subunit conserved
PFLU_RS31530 -1.5 -1.1 transposase compare
PFLU_RS06555 -1.5 -8.1 OmpA family protein compare
PFLU_RS00175 -1.5 -7.4 tryptophan synthase subunit alpha compare
PFLU_RS08370 -1.5 -2.1 hypothetical protein compare
PFLU_RS26905 -1.5 -7.1 transcriptional regulator NrdR compare
PFLU_RS00180 -1.5 -5.4 tryptophan synthase subunit beta compare
PFLU_RS31800 -1.5 -2.3 hypothetical protein compare
PFLU_RS15410 -1.4 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04650 -1.4 -10.7 ABC transporter substrate-binding protein compare
PFLU_RS20575 -1.4 -4.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01620 -1.4 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04150 -1.4 -4.6 DUF1043 family protein compare
PFLU_RS28535 -1.4 -9.6 dihydroxy-acid dehydratase compare
PFLU_RS29275 -1.4 -5.2 DUF484 family protein compare
PFLU_RS27370 -1.4 -7.9 anthranilate phosphoribosyltransferase compare
PFLU_RS21300 -1.4 -4.2 cysteine hydrolase compare
PFLU_RS20565 -1.4 -9.6 3-isopropylmalate dehydrogenase compare
PFLU_RS25750 -1.4 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS04315 -1.4 -2.7 rod shape-determining protein MreD compare
PFLU_RS27650 -1.4 -9.1 biotin synthase BioB compare
PFLU_RS27620 -1.4 -9.9 acyl-CoA dehydrogenase compare
PFLU_RS01900 -1.4 -6.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS19170 -1.4 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18615 -1.4 -2.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS22370 -1.4 -6.1 cadmium-translocating P-type ATPase compare
PFLU_RS18885 -1.4 -2.2 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS20510 -1.4 -8.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS02975 -1.3 -6.7 precorrin-3B synthase compare
PFLU_RS07525 -1.3 -1.7 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS28165 -1.3 -8.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20520 -1.3 -6.9 colicin V production protein CvpA compare
PFLU_RS08630 -1.3 -4.3 molybdopterin molybdotransferase MoeA compare
PFLU_RS08625 -1.3 -3.1 molybdenum cofactor biosynthesis protein B compare
PFLU_RS24785 -1.3 -7.1 outer membrane protein assembly factor BamB compare
PFLU_RS27645 -1.3 -8.1 8-amino-7-oxononanoate synthase compare
PFLU_RS04195 -1.3 -2.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS23920 -1.2 -2.1 septation protein A compare
PFLU_RS26020 -1.2 -8.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS28390 -1.2 -6.3 methionine biosynthesis protein MetW compare
PFLU_RS23585 -1.2 -5.4 GntP family permease compare
PFLU_RS29755 -1.2 -7.6 phosphate ABC transporter ATP-binding protein compare
PFLU_RS07275 -1.2 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS08620 -1.2 -3.8 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS20730 -1.2 -1.4 hypothetical protein compare
PFLU_RS24590 -1.2 -3.0 cytochrome c assembly protein compare
PFLU_RS07640 -1.2 -6.4 universal stress protein compare
PFLU_RS17295 -1.2 -3.7 type VI secretion system contractile sheath small subunit compare
PFLU_RS25640 -1.2 -7.2 ketol-acid reductoisomerase compare
PFLU_RS04325 -1.2 -9.0 ribonuclease G compare
PFLU_RS01605 -1.2 -5.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS08735 -1.2 -1.1 histidine phosphatase family protein compare
PFLU_RS28315 -1.2 -1.2 response regulator compare
PFLU_RS03765 -1.2 -6.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS28195 -1.2 -7.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS29765 -1.2 -8.9 ABC transporter permease subunit compare
PFLU_RS07520 -1.2 -1.2 hypothetical protein compare
PFLU_RS07255 -1.2 -3.4 sulfurtransferase TusA family protein compare
PFLU_RS29280 -1.2 -5.1 tyrosine recombinase XerC compare
PFLU_RS08350 -1.2 -2.2 ABC transporter ATP-binding protein compare
PFLU_RS28655 -1.2 -8.0 HAD family hydrolase compare
PFLU_RS00310 -1.2 -1.6 twin transmembrane helix small protein compare
PFLU_RS27630 -1.2 -3.5 dethiobiotin synthase compare
PFLU_RS04220 -1.2 -5.9 FadR family transcriptional regulator compare
PFLU_RS01390 -1.1 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS25925 -1.1 -1.9 RnfH family protein compare
PFLU_RS07225 -1.1 -8.2 L-aspartate oxidase compare
PFLU_RS24025 -1.1 -6.5 quinolinate synthase NadA compare
PFLU_RS08655 -1.1 -1.1 heme ABC transporter permease compare
PFLU_RS15420 -1.1 -2.5 hypothetical protein compare
PFLU_RS24670 -1.1 -1.6 HigA family addiction module antidote protein compare
PFLU_RS29490 -1.1 -5.3 ribonuclease PH compare
PFLU_RS04385 -1.1 -6.0 RNase adapter RapZ compare
PFLU_RS09575 -1.1 -3.1 FadR family transcriptional regulator compare
PFLU_RS25740 -1.1 -4.1 polynucleotide adenylyltransferase PcnB compare
PFLU_RS25360 -1.1 -4.9 glutamate 5-kinase compare
PFLU_RS29900 -1.1 -6.7 DNA helicase II compare
PFLU_RS19175 -1.1 -5.1 trigger factor compare
PFLU_RS21985 -1.1 -3.3 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS18640 -1.1 -2.7 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS19900 -1.1 -2.1 general secretion pathway protein GspM compare
PFLU_RS03770 -1.1 -6.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS22580 -1.1 -7.2 NarK/NasA family nitrate transporter conserved
PFLU_RS18635 -1.1 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS08675 -1.1 -1.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS30165 -1.1 -5.4 ParA family protein compare
PFLU_RS24050 -1.1 -6.2 tol-pal system protein YbgF compare
PFLU_RS00465 -1.0 -6.0 spore maturation protein compare
PFLU_RS27640 -1.0 -1.4 alpha/beta fold hydrolase compare
PFLU_RS21900 -1.0 -2.4 hypothetical protein compare
PFLU_RS20185 -1.0 -2.8 hypothetical protein compare
PFLU_RS02365 -1.0 -5.8 glycosyltransferase compare
PFLU_RS18725 -1.0 -1.5 alpha/beta hydrolase compare
PFLU_RS28320 -1.0 -1.7 glutathione synthase compare
PFLU_RS29905 -1.0 -3.8 Tim44 domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms