Experiment set4IT059 for Herbaspirillum seropedicae SmR1

Compare to:

Min media with glucose

200 most important genes:

  gene name fitness t score description  
HSERO_RS07160 -7.6 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS18990 -7.3 -8.7 pyrroline-5-carboxylate reductase compare
HSERO_RS20315 -6.9 -4.7 imidazole glycerol phosphate synthase compare
HSERO_RS20350 -6.7 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS16505 -6.5 -6.3 3-isopropylmalate dehydratase small subunit compare
HSERO_RS20310 -6.4 -5.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS20345 -6.3 -7.5 histidinol dehydrogenase compare
HSERO_RS02330 -6.2 -6.0 aspartate carbamoyltransferase compare
HSERO_RS02650 -6.1 -8.4 dihydroxy-acid dehydratase compare
HSERO_RS16480 -6.1 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS20330 -6.1 -7.3 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS08650 -6.1 -12.7 acetolactate synthase compare
HSERO_RS05190 -6.0 -13.5 sugar ABC transporter substrate-binding protein compare
HSERO_RS01815 -5.9 -8.1 gamma-glutamyl kinase compare
HSERO_RS16470 -5.9 -4.1 tryptophan synthase subunit alpha compare
HSERO_RS19435 -5.8 -9.7 anthranilate synthase subunit I compare
HSERO_RS15565 -5.8 -5.6 sulfate adenylyltransferase subunit 2 compare
HSERO_RS16515 -5.7 -11.0 isopropylmalate isomerase compare
HSERO_RS19595 -5.7 -16.3 glutamate synthase compare
HSERO_RS02340 -5.6 -18.3 dihydroorotase compare
HSERO_RS19450 -5.6 -3.7 indole-3-glycerol-phosphate synthase compare
HSERO_RS05200 -5.5 -9.8 ABC transporter permease compare
HSERO_RS17185 -5.4 -9.2 2-isopropylmalate synthase compare
HSERO_RS19445 -5.4 -7.7 anthranilate phosphoribosyltransferase compare
HSERO_RS05215 -5.4 -13.0 LysR family transcriptional regulator compare
HSERO_RS15570 -5.3 -8.0 sulfate adenylyltransferase compare
HSERO_RS05195 -5.3 -9.6 xylose ABC transporter ATP-binding protein compare
HSERO_RS20320 -5.3 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS18430 -5.2 -4.8 chorismate mutase compare
HSERO_RS19510 -5.0 -10.7 threonine dehydratase compare
HSERO_RS16500 -5.0 -6.2 3-isopropylmalate dehydrogenase compare
HSERO_RS15550 -5.0 -5.9 sulfite reductase compare
HSERO_RS00455 -5.0 -9.2 homoserine O-acetyltransferase compare
HSERO_RS14670 -4.9 -15.7 phosphoenolpyruvate carboxylase compare
HSERO_RS16475 -4.9 -2.6 tryptophan synthase subunit alpha compare
HSERO_RS20325 -4.8 -6.3 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS01935 -4.8 -7.6 3-dehydroquinate dehydratase compare
HSERO_RS15560 -4.6 -6.8 phosphoadenosine phosphosulfate reductase compare
HSERO_RS16440 -4.6 -5.0 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15600 -4.3 -8.5 cytosol aminopeptidase compare
HSERO_RS00795 -4.3 -5.0 glycerol-3-phosphate dehydrogenase compare
HSERO_RS07970 -4.1 -2.6 formyltetrahydrofolate deformylase compare
HSERO_RS10805 -4.1 -2.7 succinyldiaminopimelate aminotransferase compare
HSERO_RS04335 -3.9 -3.5 sodium:proton antiporter compare
HSERO_RS15555 -3.9 -4.3 oxidoreductase compare
HSERO_RS15575 -3.8 -2.6 uroporphyrin-III C-methyltransferase compare
HSERO_RS20920 -3.8 -5.5 3-dehydroquinate synthase compare
HSERO_RS10460 -3.7 -2.1 homoserine dehydrogenase compare
HSERO_RS04340 -3.7 -11.4 gamma-glutamyl ligase compare
HSERO_RS18425 -3.3 -2.5 prephenate dehydrogenase compare
HSERO_RS15630 -3.3 -1.8 exodeoxyribonuclease III compare
HSERO_RS17815 -3.2 -2.2 glycosyl transferase compare
HSERO_RS15040 -3.2 -7.2 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS08655 -3.1 -2.3 acetolactate synthase compare
HSERO_RS19590 -2.8 -1.6 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS23945 -2.7 -3.4 cobyric acid synthase CobQ compare
HSERO_RS05515 -2.6 -1.0 glucose-6-phosphate isomerase compare
HSERO_RS11070 -2.6 -7.7 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS17810 -2.6 -1.0 glycosyl transferase compare
HSERO_RS08640 -2.6 -2.8 hypothetical protein compare
HSERO_RS07755 -2.6 -7.9 glutamate racemase compare
HSERO_RS22455 -2.6 -10.7 AraC family transcriptional regulator compare
HSERO_RS08660 -2.5 -7.2 ketol-acid reductoisomerase compare
HSERO_RS10455 -2.5 -6.8 aminotransferase compare
HSERO_RS02090 -2.4 -1.7 Holliday junction DNA helicase RuvA compare
HSERO_RS22725 -2.3 -7.8 transcriptional regulator compare
HSERO_RS15070 -2.3 -2.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS04265 -2.3 -2.5 tyrosine recombinase XerD compare
HSERO_RS17980 -2.2 -4.0 GTP-binding protein compare
HSERO_RS07600 -2.2 -4.9 threonine-phosphate decarboxylase compare
HSERO_RS22465 -2.1 -7.0 sugar ABC transporter compare
HSERO_RS15835 -2.1 -2.4 aspartate aminotransferase compare
HSERO_RS15585 -2.0 -10.2 cobalamin biosynthesis protein CbiX compare
HSERO_RS10815 -2.0 -5.1 chromosome segregation protein SMC compare
HSERO_RS01260 -2.0 -4.2 3-hydroxyacyl-CoA dehydrogenase compare
HSERO_RS02325 -2.0 -4.5 uracil phosphoribosyltransferase compare
HSERO_RS09050 -2.0 -4.1 2-aminoadipate aminotransferase compare
HSERO_RS01990 -1.9 -8.4 shikimate 5-dehydrogenase compare
HSERO_RS22460 -1.9 -7.6 xylose ABC transporter substrate-binding protein compare
HSERO_RS04325 -1.9 -6.2 helicase I compare
HSERO_RS22730 -1.9 -6.2 sugar ABC transporter substrate-binding protein compare
HSERO_RS20990 -1.8 -7.4 aminotransferase DegT compare
HSERO_RS18995 -1.8 -2.9 hypothetical protein compare
HSERO_RS20985 -1.8 -2.0 serine acetyltransferase compare
HSERO_RS11065 -1.8 -4.0 quinolinate synthetase compare
HSERO_RS20355 -1.7 -3.0 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS00815 -1.7 -2.9 sulfurtransferase compare
HSERO_RS22720 -1.6 -7.3 histidine kinase compare
HSERO_RS11085 -1.6 -5.8 L-aspartate oxidase compare
HSERO_RS13280 -1.6 -3.3 precorrin-4 C11-methyltransferase compare
HSERO_RS22470 -1.6 -5.7 D-xylose ABC transporter permease compare
HSERO_RS02630 -1.6 -3.1 membrane protein compare
HSERO_RS17105 -1.5 -3.1 DNA polymerase III subunit epsilon compare
HSERO_RS05125 -1.5 -4.3 DeoR family transcripitonal regulator compare
HSERO_RS21760 -1.5 -2.2 DSBA oxidoreductase compare
HSERO_RS04330 -1.5 -5.4 ATP-dependent exonuclease compare
HSERO_RS21370 -1.4 -2.2 dihydrolipoamide acyltransferase compare
HSERO_RS06940 -1.4 -2.4 23S rRNA methyltransferase compare
HSERO_RS21100 -1.4 -10.1 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS01180 -1.4 -8.0 acetyl-CoA acetyltransferase compare
HSERO_RS14840 -1.3 -3.0 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS00800 -1.3 -2.4 hypothetical protein compare
HSERO_RS08635 -1.2 -3.0 hypothetical protein compare
HSERO_RS21445 -1.2 -1.5 lipid A biosynthesis acyltransferase compare
HSERO_RS09650 -1.2 -2.0 elongation factor 4 compare
HSERO_RS20625 -1.2 -1.4 phenylacetate-CoA oxygenase compare
HSERO_RS19835 -1.2 -2.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS10865 -1.2 -4.2 PII uridylyl-transferase compare
HSERO_RS20630 -1.2 -2.4 phenylacetic acid degradation protein compare
HSERO_RS02260 -1.2 -2.5 DNA polymerase I compare
HSERO_RS06165 -1.1 -5.0 ATP-dependent DNA helicase RecG compare
HSERO_RS00460 -1.1 -2.6 methionine biosynthesis protein MetW compare
HSERO_RS13285 -1.1 -1.9 precorrin-2 C20-methyltransferase compare
HSERO_RS17110 -1.1 -2.5 ribonuclease H compare
HSERO_RS08515 -1.1 -2.4 diguanylate cyclase compare
HSERO_RS03540 -1.1 -1.4 dimethyladenosine transferase compare
HSERO_RS15680 -1.1 -4.8 chemotaxis protein CheY compare
HSERO_RS08430 -1.1 -3.5 diguanylate cyclase compare
HSERO_RS02145 -1.1 -1.1 ferritin compare
HSERO_RS07935 -1.0 -5.4 serine acetyltransferase compare
HSERO_RS03270 -1.0 -4.1 protein RecA compare
HSERO_RS22285 -1.0 -1.9 GntR family transcriptional regulator compare
HSERO_RS05475 -1.0 -5.3 gluconokinase compare
HSERO_RS09155 -1.0 -4.4 DNA topoisomerase IV subunit B compare
HSERO_RS03860 -1.0 -3.3 hypothetical protein compare
HSERO_RS16275 -1.0 -1.6 5-hydroxyisourate hydrolase compare
HSERO_RS21935 -1.0 -1.5 cytochrome C compare
HSERO_RS21015 -1.0 -4.9 imidazole glycerol phosphate synthase compare
HSERO_RS02160 -1.0 -1.8 DNA-dependent helicase compare
HSERO_RS14855 -1.0 -7.1 helicase compare
HSERO_RS08725 -1.0 -2.2 transcriptional regulator compare
HSERO_RS05910 -1.0 -2.0 phosphoribosylglycinamide formyltransferase compare
HSERO_RS15545 -1.0 -3.8 membrane protein compare
HSERO_RS11090 -1.0 -4.3 phosphoribosylglycinamide formyltransferase compare
HSERO_RS11460 -1.0 -1.5 universal stress protein compare
HSERO_RS01825 -1.0 -4.5 RNA pyrophosphohydrolase compare
HSERO_RS00430 -0.9 -3.2 glutamate--cysteine ligase compare
HSERO_RS14835 -0.9 -3.6 peptidase M23 compare
HSERO_RS13960 -0.9 -2.8 hypothetical protein compare
HSERO_RS21475 -0.9 -1.8 recombinase XerC compare
HSERO_RS19525 -0.9 -2.0 PTS sugar transporter subunit IIA compare
HSERO_RS13305 -0.9 -3.3 magnesium chelatase compare
HSERO_RS21425 -0.9 -2.8 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS18105 -0.9 -1.8 hypothetical protein compare
HSERO_RS09745 -0.9 -1.4 chemotaxis protein CheY compare
HSERO_RS22040 -0.9 -2.6 CDP-glucose 4,6-dehydratase compare
HSERO_RS09145 -0.9 -2.2 DNA topoisomerase IV subunit A compare
HSERO_RS19785 -0.9 -4.1 sensor histidine kinase compare
HSERO_RS09455 -0.9 -2.6 NAD synthetase compare
HSERO_RS13260 -0.9 -2.7 cobinamide adenolsyltransferase compare
HSERO_RS21240 -0.9 -1.7 polar amino acid ABC transporter permease compare
HSERO_RS22475 -0.9 -4.6 3-oxoacyl-ACP reductase compare
HSERO_RS06175 -0.9 -3.6 queuine tRNA-ribosyltransferase compare
HSERO_RS15780 -0.9 -2.5 GntR family transcriptional regulator compare
HSERO_RS11885 -0.9 -1.5 hypothetical protein compare
HSERO_RS14935 -0.8 -1.5 hypothetical protein compare
HSERO_RS24030 -0.8 -2.3 hypothetical protein compare
HSERO_RS02205 -0.8 -0.7 phosphatase compare
HSERO_RS14930 -0.8 -1.4 aldolase compare
HSERO_RS04240 -0.8 -2.7 C4-dicarboxylate ABC transporter compare
HSERO_RS09760 -0.8 -3.0 hypothetical protein compare
HSERO_RS21990 -0.8 -1.2 hypothetical protein compare
HSERO_RS21480 -0.8 -1.2 transcriptional regulator compare
HSERO_RS14950 -0.8 -1.9 purine-binding chemotaxis protein compare
HSERO_RS04875 -0.8 -2.6 glycerol kinase compare
HSERO_RS10650 -0.8 -2.8 hypothetical protein compare
HSERO_RS16535 -0.8 -2.9 hypothetical protein compare
HSERO_RS06170 -0.8 -0.9 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS13255 -0.8 -2.4 cobyrinic acid a,c-diamide synthase compare
HSERO_RS19910 -0.8 -2.4 AraC family transcriptional regulator compare
HSERO_RS13270 -0.8 -3.0 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS19550 -0.8 -1.6 hypothetical protein compare
HSERO_RS20775 -0.8 -1.3 membrane protein compare
HSERO_RS20815 -0.8 -1.9 tRNA methyltransferase compare
HSERO_RS02470 -0.8 -2.6 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS01720 -0.7 -1.7 membrane protein compare
HSERO_RS03235 -0.7 -1.2 hypothetical protein compare
HSERO_RS18455 -0.7 -2.2 phosphoglycolate phosphatase compare
HSERO_RS04850 -0.7 -3.0 ABC transporter ATP-binding protein compare
HSERO_RS04150 -0.7 -1.1 hypothetical protein compare
HSERO_RS13410 -0.7 -2.2 hypothetical protein compare
HSERO_RS07140 -0.7 -2.5 glutamine-synthetase adenylyltransferase compare
HSERO_RS15180 -0.7 -2.7 transcription-repair coupling factor compare
HSERO_RS18525 -0.7 -2.7 hypothetical protein compare
HSERO_RS09735 -0.7 -3.1 hypothetical protein compare
HSERO_RS04870 -0.7 -4.6 glycerol ABC transporter, substrate-binding component (from data) compare
HSERO_RS12215 -0.7 -1.7 alpha/beta hydrolase superfamily protein compare
HSERO_RS13310 -0.7 -4.1 cobaltochelatase compare
HSERO_RS19205 -0.7 -2.2 hypothetical protein compare
HSERO_RS10085 -0.7 -1.3 transcriptional regulator compare
HSERO_RS21575 -0.7 -2.1 transcriptional regulator compare
HSERO_RS20240 -0.7 -1.2 cytochrome B compare
HSERO_RS08795 -0.7 -1.0 transcriptional regulator compare
HSERO_RS13320 -0.7 -2.0 membrane protein compare
HSERO_RS18515 -0.7 -1.7 membrane protein compare
HSERO_RS13965 -0.7 -1.4 single-stranded DNA exonuclease compare
HSERO_RS13880 -0.7 -0.8 hypothetical protein compare
HSERO_RS11155 -0.7 -2.5 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS02130 -0.7 -2.3 thiazole synthase compare
HSERO_RS20020 -0.7 -1.4 enoyl-CoA hydratase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in nutrient experiments