Experiment set4IT058 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
LRK54_RS02445 -4.2 -4.0 membrane protein insertion efficiency factor YidD compare
LRK54_RS14670 -4.1 -2.8 NrsF family protein compare
LRK54_RS11700 -3.9 -2.7 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS02275 -3.8 -2.7 enoyl-CoA hydratase-related protein compare
LRK54_RS11710 -3.7 -10.4 cytochrome ubiquinol oxidase subunit I compare
LRK54_RS16155 -3.7 -2.5 folate-binding protein compare
LRK54_RS04365 -3.6 -2.5 H-NS histone family protein compare
LRK54_RS06885 -3.6 -4.2 rhodanese-like domain-containing protein compare
LRK54_RS00345 -3.5 -3.4 TraB/GumN family protein compare
LRK54_RS06755 -3.5 -17.0 LTA synthase family protein compare
LRK54_RS10150 -3.5 -2.4 DNA topoisomerase I compare
LRK54_RS12190 -3.4 -6.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS16615 -3.4 -2.3 phosphopyruvate hydratase compare
LRK54_RS04350 -3.4 -2.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS14695 -3.4 -8.2 rhomboid family intramembrane serine protease compare
LRK54_RS00620 -3.3 -6.0 FtsH protease activity modulator HflK compare
LRK54_RS17505 -3.3 -3.9 preprotein translocase subunit SecG compare
LRK54_RS00690 -3.3 -6.8 2-methylcitrate synthase compare
LRK54_RS11385 -3.3 -3.2 co-chaperone DjlA compare
LRK54_RS16600 -3.3 -10.9 aminopeptidase P family protein compare
LRK54_RS11705 -3.3 -12.5 cytochrome d ubiquinol oxidase subunit II compare
LRK54_RS12295 -3.3 -3.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS06675 -3.2 -6.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS04585 -3.2 -3.8 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS06415 -3.2 -2.2 hypothetical protein compare
LRK54_RS12860 -3.2 -3.1 RNase adapter RapZ compare
LRK54_RS14590 -3.2 -6.0 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS10855 -3.1 -2.2 protein-export chaperone SecB compare
LRK54_RS02325 -3.1 -2.1 SDR family oxidoreductase compare
LRK54_RS00615 -3.1 -4.3 protease modulator HflC compare
LRK54_RS16660 -3.1 -6.0 VTT domain-containing protein compare
LRK54_RS00440 -3.1 -4.7 high frequency lysogenization protein HflD compare
LRK54_RS02895 -3.1 -5.9 rhomboid family intramembrane serine protease compare
LRK54_RS02440 -3.0 -2.1 RNA polymerase-binding protein DksA compare
LRK54_RS08585 -3.0 -18.4 RimK family alpha-L-glutamate ligase compare
LRK54_RS06470 -3.0 -6.1 carboxy terminal-processing peptidase compare
LRK54_RS07300 -2.9 -18.6 TonB-dependent receptor compare
LRK54_RS11375 -2.9 -7.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS00085 -2.9 -2.0 tetratricopeptide repeat protein compare
LRK54_RS05415 -2.9 -5.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS16940 -2.9 -2.8 RNA polymerase sigma factor RpoE compare
LRK54_RS05740 -2.9 -7.3 phosphoglycerate kinase compare
LRK54_RS14825 -2.9 -2.8 protease HtpX compare
LRK54_RS12855 -2.9 -5.4 PTS fructose transporter subunit IIA compare
LRK54_RS11290 -2.8 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS12590 -2.8 -9.5 molybdopterin-dependent oxidoreductase compare
LRK54_RS16875 -2.8 -14.3 kinase/pyrophosphorylase compare
LRK54_RS04720 -2.8 -6.9 phosphoribosylformylglycinamidine synthase compare
LRK54_RS05735 -2.8 -12.6 maleylacetoacetate isomerase compare
LRK54_RS09805 -2.8 -5.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS06795 -2.7 -7.2 type II 3-dehydroquinate dehydratase compare
LRK54_RS05495 -2.7 -5.2 met regulon transcriptional regulator MetJ compare
LRK54_RS15265 -2.7 -10.5 acetyl-CoA C-acyltransferase compare
LRK54_RS02285 -2.7 -11.2 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS17160 -2.7 -2.6 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS06820 -2.7 -3.1 Fis family transcriptional regulator compare
LRK54_RS11170 -2.7 -3.6 NADP-dependent malic enzyme compare
LRK54_RS11975 -2.7 -4.1 SLC13 family permease compare
LRK54_RS12300 -2.7 -5.9 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS03110 -2.6 -9.1 nucleotidyltransferase family protein compare
LRK54_RS15035 -2.6 -3.1 M48 family metalloprotease compare
LRK54_RS05785 -2.6 -8.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS02050 -2.6 -11.9 thiamine pyrophosphate-dependent enzyme compare
LRK54_RS10185 -2.6 -16.5 RDD family protein compare
LRK54_RS05200 -2.6 -3.9 hypothetical protein compare
LRK54_RS02090 -2.6 -7.3 NAD-glutamate dehydrogenase compare
LRK54_RS13830 -2.6 -7.3 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS03710 -2.6 -7.3 tetratricopeptide repeat protein compare
LRK54_RS12460 -2.6 -2.5 hypothetical protein compare
LRK54_RS12670 -2.5 -4.2 glycosyltransferase compare
LRK54_RS05985 -2.5 -1.7 response regulator transcription factor compare
LRK54_RS12305 -2.5 -10.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS04035 -2.5 -7.1 ATP-binding protein compare
LRK54_RS13760 -2.5 -7.2 trypsin-like peptidase domain-containing protein compare
LRK54_RS07980 -2.5 -2.4 nitrogen regulation protein NR(I) compare
LRK54_RS03405 -2.5 -8.1 ribonuclease G compare
LRK54_RS06720 -2.4 -12.2 glycosyltransferase compare
LRK54_RS18050 -2.4 -11.7 lipopolysaccharide assembly protein LapB compare
LRK54_RS03895 -2.4 -11.4 lipopolysaccharide biosynthesis protein compare
LRK54_RS03290 -2.4 -1.7 RIP metalloprotease RseP compare
LRK54_RS15020 -2.4 -15.4 polyphosphate kinase 1 compare
LRK54_RS00670 -2.4 -4.0 OmpA family protein compare
LRK54_RS02535 -2.4 -4.5 50S ribosomal protein L9 compare
LRK54_RS09000 -2.4 -12.0 HAMP domain-containing histidine kinase compare
LRK54_RS00675 -2.4 -5.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS12865 -2.4 -7.5 HPr(Ser) kinase/phosphatase compare
LRK54_RS11175 -2.3 -8.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS05530 -2.3 -2.2 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS13085 -2.3 -13.4 alpha-glucosidase family protein compare
LRK54_RS05655 -2.3 -1.6 ABC transporter permease compare
LRK54_RS08595 -2.3 -8.8 shikimate dehydrogenase compare
LRK54_RS16720 -2.3 -7.9 trigger factor compare
LRK54_RS02460 -2.2 -9.0 phosphoglycolate phosphatase compare
LRK54_RS16110 -2.2 -11.1 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS12945 -2.2 -9.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS16755 -2.2 -2.6 SurA N-terminal domain-containing protein compare
LRK54_RS12580 -2.2 -3.9 hypothetical protein compare
LRK54_RS03925 -2.2 -11.2 glycosyltransferase family 4 protein compare
LRK54_RS02070 -2.2 -2.1 acyl-CoA dehydrogenase family protein compare
LRK54_RS17215 -2.1 -1.5 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS05980 -2.1 -1.5 ATP-binding protein compare
LRK54_RS06610 -2.1 -15.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS00695 -2.1 -2.5 methylisocitrate lyase compare
LRK54_RS16665 -2.1 -9.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS02175 -2.1 -8.4 exodeoxyribonuclease V subunit gamma compare
LRK54_RS05650 -2.1 -3.5 ABC transporter ATP-binding protein compare
LRK54_RS00680 -2.1 -11.3 TerC family protein compare
LRK54_RS03125 -2.1 -1.4 preprotein translocase subunit YajC compare
LRK54_RS16730 -2.1 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS16735 -2.1 -12.0 endopeptidase La compare
LRK54_RS05615 -2.1 -11.6 hypothetical protein compare
LRK54_RS08750 -2.0 -3.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS02855 -2.0 -4.7 type I restriction-modification system subunit M compare
LRK54_RS08520 -2.0 -14.5 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS13910 -2.0 -5.8 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS02185 -1.9 -4.1 exodeoxyribonuclease V subunit alpha compare
LRK54_RS10950 -1.9 -11.0 S41 family peptidase compare
LRK54_RS05550 -1.9 -1.8 FAD-binding protein compare
LRK54_RS11565 -1.9 -4.3 anthranilate phosphoribosyltransferase compare
LRK54_RS07215 -1.9 -5.8 cytochrome c4 compare
LRK54_RS01685 -1.9 -10.6 tryptophan synthase subunit beta compare
LRK54_RS00815 -1.9 -5.2 pseudouridine synthase compare
LRK54_RS03200 -1.9 -7.3 integration host factor subunit alpha compare
LRK54_RS00705 -1.9 -8.4 alkyl hydroperoxide reductase subunit C compare
LRK54_RS00805 -1.8 -3.7 segregation/condensation protein A compare
LRK54_RS11765 -1.8 -8.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS02180 -1.8 -7.2 UvrD-helicase domain-containing protein compare
LRK54_RS05665 -1.8 -5.2 dTDP-glucose 4,6-dehydratase compare
LRK54_RS01020 -1.8 -7.5 pha synthase subunit protein compare
LRK54_RS17270 -1.8 -2.7 DNA translocase FtsK compare
LRK54_RS04710 -1.8 -3.4 glycosyltransferase family 2 protein compare
LRK54_RS06495 -1.8 -12.3 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS15935 -1.8 -8.1 rRNA pseudouridine synthase compare
LRK54_RS13915 -1.8 -12.6 beta-ketoacyl-ACP synthase I compare
LRK54_RS04630 -1.8 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS13780 -1.8 -6.4 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS16865 -1.7 -7.4 protein phosphatase 2C domain-containing protein compare
LRK54_RS18055 -1.7 -4.4 glycosyltransferase family 4 protein compare
LRK54_RS00405 -1.7 -4.5 FHA domain-containing protein compare
LRK54_RS00635 -1.7 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS01680 -1.7 -6.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS00305 -1.7 -10.4 asparagine synthase B compare
LRK54_RS01015 -1.7 -12.7 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS10640 -1.7 -3.9 SCP2 sterol-binding domain-containing protein compare
LRK54_RS17905 -1.7 -1.9 NfuA family Fe-S biogenesis protein compare
LRK54_RS12595 -1.7 -3.1 (2Fe-2S)-binding protein compare
LRK54_RS05630 -1.7 -6.4 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS04305 -1.7 -2.9 shikimate kinase compare
LRK54_RS06785 -1.7 -1.1 protein-disulfide reductase DsbD compare
LRK54_RS05610 -1.6 -8.1 GtrA family protein compare
LRK54_RS11560 -1.6 -3.3 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS03675 -1.6 -1.9 redox-regulated ATPase YchF compare
LRK54_RS11785 -1.6 -11.3 VacJ family lipoprotein compare
LRK54_RS02550 -1.6 -3.4 iron-sulfur cluster assembly accessory protein compare
LRK54_RS09825 -1.6 -9.0 alpha/beta hydrolase compare
LRK54_RS16650 -1.6 -6.7 5'/3'-nucleotidase SurE compare
LRK54_RS01410 -1.6 -11.4 ABC transporter ATP-binding protein/permease compare
LRK54_RS16655 -1.6 -3.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS00420 -1.6 -12.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS01285 -1.6 -4.4 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS03395 -1.6 -13.6 metalloprotease TldD compare
LRK54_RS04545 -1.6 -7.6 hemin uptake protein HemP compare
LRK54_RS11570 -1.6 -3.9 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS15165 -1.6 -3.3 enoyl-CoA hydratase-related protein compare
LRK54_RS00080 -1.5 -8.0 helix-turn-helix domain-containing protein compare
LRK54_RS00320 -1.5 -2.6 phosphoglycerate mutase compare
LRK54_RS06875 -1.5 -1.5 YiiD C-terminal domain-containing protein compare
LRK54_RS09720 -1.5 -11.0 pteridine-dependent deoxygenase compare
LRK54_RS11415 -1.5 -10.2 anthranilate synthase component I compare
LRK54_RS08760 -1.5 -3.3 transaldolase compare
LRK54_RS02395 -1.5 -3.6 acetylornithine deacetylase compare
LRK54_RS00175 -1.5 -2.5 transposase compare
LRK54_RS18005 -1.5 -7.0 transcription elongation factor GreA compare
LRK54_RS00395 -1.5 -3.3 prephenate dehydratase compare
LRK54_RS12725 -1.4 -8.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK54_RS00810 -1.4 -3.2 SMC-Scp complex subunit ScpB compare
LRK54_RS07020 -1.4 -1.3 ABC transporter permease compare
LRK54_RS03745 -1.4 -7.0 NAD(P)H:quinone oxidoreductase compare
LRK54_RS11770 -1.4 -10.4 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS12830 -1.4 -4.3 YeiH family protein compare
LRK54_RS17205 -1.4 -2.3 heavy metal translocating P-type ATPase compare
LRK54_RS16740 -1.4 -2.6 HU family DNA-binding protein compare
LRK54_RS05535 -1.4 -5.1 glycosyltransferase family 2 protein compare
LRK54_RS03375 -1.4 -9.2 metalloprotease PmbA compare
LRK54_RS11760 -1.4 -8.6 ATP-binding cassette domain-containing protein compare
LRK54_RS06685 -1.4 -10.7 TolC family outer membrane protein compare
LRK54_RS15095 -1.4 -5.7 ferredoxin family protein compare
LRK54_RS07775 -1.4 -3.1 MarR family transcriptional regulator compare
LRK54_RS15605 -1.4 -4.1 hypothetical protein compare
LRK54_RS16670 -1.4 -8.0 Mth938-like domain-containing protein compare
LRK54_RS18015 -1.4 -8.4 LysR family transcriptional regulator compare
LRK54_RS09250 -1.4 -11.7 rhomboid family intramembrane serine protease compare
LRK54_RS03130 -1.4 -6.1 tRNA guanosine(34) transglycosylase Tgt compare
LRK54_RS03930 -1.3 -8.7 glycosyltransferase family 2 protein compare
LRK54_RS10570 -1.3 -4.8 accessory factor UbiK family protein compare
LRK54_RS05275 -1.3 -2.2 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS16955 -1.3 -8.7 translation elongation factor 4 compare
LRK54_RS16240 -1.3 -8.8 formimidoylglutamate deiminase compare
LRK54_RS07985 -1.3 -3.4 ATP-binding protein compare
LRK54_RS07735 -1.3 -8.3 metalloregulator ArsR/SmtB family transcription factor compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in r2a_control experiments