Experiment set4IT058 for Acidovorax sp. GW101-3H11

Compare to:

LB, pH5

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_3141 +1.2 4.3 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Ac3H11_926 +1.2 3.6 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_3859 +1.2 7.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Ac3H11_3425 +1.0 2.2 hypothetical protein compare
Ac3H11_2693 +1.0 2.7 S-adenosylhomocysteine hydrolase compare
Ac3H11_3126 +1.0 8.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Ac3H11_1745 +1.0 5.9 Regulatory protein, RpfE type compare
Ac3H11_934 +1.0 6.2 Cell division trigger factor (EC 5.2.1.8) compare
Ac3H11_2478 +0.9 1.5 hypothetical protein compare
Ac3H11_339 +0.9 5.4 Transcriptional regulator, PadR family compare
Ac3H11_162 +0.9 1.3 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_4216 +0.9 2.5 hypothetical protein compare
Ac3H11_1869 +0.9 1.3 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) compare
Ac3H11_546 +0.9 6.6 ABC transporter ATP-binding protein compare
Ac3H11_4194 +0.9 1.6 DNA polymerase-like protein PA0670 compare
Ac3H11_2221 +0.8 5.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Ac3H11_3321 +0.8 1.9 hypothetical protein compare
Ac3H11_3087 +0.8 2.1 P-hydroxylaminobenzoate lyase compare
Ac3H11_1509 +0.8 5.4 membrane protein, putative compare
Ac3H11_4637 +0.8 4.4 hypothetical protein compare
Ac3H11_4632 +0.8 5.4 General secretion pathway protein A compare
Ac3H11_3759 +0.8 2.6 hypothetical protein compare
Ac3H11_2033 +0.8 2.9 General secretion pathway protein L compare
Ac3H11_4745 +0.8 3.6 FIG137478: Hypothetical protein YbgI compare
Ac3H11_3376 +0.8 2.8 hypothetical protein compare
Ac3H11_4710 +0.7 6.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Ac3H11_2053 +0.7 1.2 hypothetical protein compare
Ac3H11_2379 +0.7 4.3 exported protein compare
Ac3H11_601 +0.7 1.4 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Ac3H11_4373 +0.7 1.3 conserved hypothetical protein compare
Ac3H11_4004 +0.7 5.5 Thiol:disulfide interchange protein DsbC compare
Ac3H11_3672 +0.7 6.3 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Ac3H11_3152 +0.7 1.9 Citrate lyase beta chain (EC 4.1.3.6) compare
Ac3H11_2021 +0.7 1.0 hypothetical protein compare
Ac3H11_2906 +0.7 2.1 hypothetical protein compare
Ac3H11_718 +0.7 5.2 Sensor histidine kinase compare
Ac3H11_3901 +0.6 4.0 Homoserine/homoserine lactone efflux protein compare
Ac3H11_2316 +0.6 3.4 Cell division protein compare
Ac3H11_1670 +0.6 3.5 Cellulose synthase, putative compare
Ac3H11_915 +0.6 2.7 hypothetical protein compare
Ac3H11_1787 +0.6 2.8 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Ac3H11_706 +0.6 5.7 Potassium uptake protein TrkH compare
Ac3H11_4542 +0.6 1.0 PhnH protein compare
Ac3H11_4527 +0.6 1.5 Transcriptional regulator, LysR family compare
Ac3H11_3914 +0.6 1.3 Transcriptional regulator, LysR family compare
Ac3H11_3395 +0.6 3.5 alpha/beta hydrolase fold compare
Ac3H11_3265 +0.6 1.6 hypothetical protein compare
Ac3H11_719 +0.6 5.3 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate compare
Ac3H11_2692 +0.6 4.5 Chromosome partition protein smc compare
Ac3H11_4639 +0.6 4.6 Protein containing plastocyanin/azurin family domain compare
Ac3H11_708 +0.6 4.4 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
Ac3H11_2691 +0.6 2.8 FIG00575296: hypothetical protein compare
Ac3H11_2304 +0.6 5.5 Polyhydroxyalkanoic acid synthase compare
Ac3H11_2263 +0.6 2.8 Probable transmembrane protein compare
Ac3H11_1282 +0.6 2.6 FOG: WD40-like repeat compare
Ac3H11_2694 +0.6 4.0 Inorganic pyrophosphatase/exopolyphosphatase compare
Ac3H11_3613 +0.6 1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Ac3H11_4774 +0.6 5.0 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ac3H11_1029 +0.6 1.1 Putative cytoplasmic protein compare
Ac3H11_2960 +0.6 0.9 Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Ac3H11_3758 +0.6 1.4 hypothetical protein compare
Ac3H11_4378 +0.6 5.4 Cellulose synthase operon protein C compare
Ac3H11_1967 +0.6 3.0 hypothetical protein compare
Ac3H11_4430 +0.6 3.9 FIG01198927: hypothetical protein compare
Ac3H11_1080 +0.6 1.3 hypothetical protein compare
Ac3H11_632 +0.6 2.3 Methionine ABC transporter permease protein compare
Ac3H11_3573 +0.6 3.0 ABC-type tungstate transport system, periplasmic binding protein compare
Ac3H11_3490 +0.6 1.8 hypothetical protein compare
Ac3H11_705 +0.5 3.9 Trk system potassium uptake protein TrkA compare
Ac3H11_4496 +0.5 1.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Ac3H11_4375 +0.5 4.6 Cellulose synthase, putative compare
Ac3H11_769 +0.5 0.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_1298 +0.5 2.1 Transcriptional regulator, TetR family compare
Ac3H11_3563 +0.5 4.8 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
Ac3H11_3063 +0.5 2.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Ac3H11_3396 +0.5 3.3 ProQ: influences osmotic activation of compatible solute ProP compare
Ac3H11_4957 +0.5 1.1 hypothetical protein compare
Ac3H11_1283 +0.5 1.3 Malic enzyme compare
Ac3H11_4635 +0.5 3.6 transcriptional regulator, Crp/Fnr family compare
Ac3H11_4633 +0.5 1.4 putative outer membrane autotransporter barrel compare
Ac3H11_2276 +0.5 4.3 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
Ac3H11_4204 +0.5 2.2 hypothetical protein compare
Ac3H11_3205 +0.5 1.6 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
Ac3H11_380 +0.5 2.0 hypothetical protein compare
Ac3H11_4343 +0.5 1.9 hypothetical protein compare
Ac3H11_942 +0.5 1.3 hypothetical protein compare
Ac3H11_535 +0.5 1.7 Hypothetical protein DUF454 compare
Ac3H11_2285 +0.5 1.0 Transcriptional regulator, AsnC family compare
Ac3H11_3060 +0.5 0.8 hypothetical protein compare
Ac3H11_548 +0.5 0.7 hypothetical protein compare
Ac3H11_3882 +0.5 0.6 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Ac3H11_1152 +0.5 1.2 hypothetical protein compare
Ac3H11_4640 +0.5 3.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Ac3H11_349 +0.5 1.5 hypothetical protein compare
Ac3H11_3076 +0.5 1.5 Antibiotic biosynthesis monooxygenase compare
Ac3H11_1842 +0.5 2.2 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Ac3H11_1671 +0.5 4.4 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) compare
Ac3H11_2032 +0.5 1.1 General secretion pathway protein M compare
Ac3H11_3240 +0.5 1.2 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Ac3H11_4641 +0.5 2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_3741 +0.5 1.5 Mobile element protein compare
Ac3H11_82 +0.5 1.9 Methionine aminopeptidase (EC 3.4.11.18) compare
Ac3H11_2990 +0.5 1.8 Phenylacetic acid degradation protein PaaD, thioesterase compare
Ac3H11_1319 +0.5 3.9 membrane protein, putative compare
Ac3H11_1665 +0.5 4.1 Cyclic di-GMP binding protein precursor compare
Ac3H11_2774 +0.5 1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Ac3H11_4967 +0.5 1.5 hypothetical protein compare
Ac3H11_3787 +0.5 3.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Ac3H11_3722 +0.5 1.0 Urease accessory protein UreD compare
Ac3H11_3287 +0.5 3.0 EAL domain protein compare
Ac3H11_3037 +0.5 0.9 Fructose ABC transporter, ATP-binding component FrcA compare
Ac3H11_2275 +0.4 4.1 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
Ac3H11_2306 +0.4 2.7 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Ac3H11_3169 +0.4 0.7 hypothetical protein compare
Ac3H11_223 +0.4 2.6 hypothetical protein compare
Ac3H11_510 +0.4 2.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_4680 +0.4 4.2 probable outer membrane secretion protein - Rhodobacter capsulatus compare
Ac3H11_3797 +0.4 3.4 Formate dehydrogenase chain D (EC 1.2.1.2) compare
Ac3H11_4377 +0.4 3.7 Cyclic di-GMP binding protein precursor compare
Ac3H11_3261 +0.4 1.8 FIG00537971: hypothetical protein compare
Ac3H11_3858 +0.4 2.1 Glutaredoxin 3 (Grx3) compare
Ac3H11_4310 +0.4 0.5 FIG00458971: hypothetical protein compare
Ac3H11_3492 +0.4 1.7 hypothetical protein compare
Ac3H11_778 +0.4 2.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Ac3H11_326 +0.4 1.7 Mobile element protein compare
Ac3H11_1139 +0.4 2.5 hypothetical protein compare
Ac3H11_1672 +0.4 3.9 FIG002337: predicted inner membrane protein compare
Ac3H11_1922 +0.4 2.4 Citronellol and citronellal dehydrogenase compare
Ac3H11_1667 +0.4 3.8 Cellulose synthase operon protein C compare
Ac3H11_1814 +0.4 1.7 low-specificity D-threonine aldolase compare
Ac3H11_4568 +0.4 2.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Ac3H11_3372 +0.4 1.7 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Ac3H11_4623 +0.4 2.0 Tricarboxylate transport protein TctC compare
Ac3H11_4546 +0.4 1.7 Phosphonates transport ATP-binding protein PhnK compare
Ac3H11_1428 +0.4 1.5 Mobile element protein compare
Ac3H11_3288 +0.4 0.9 Basic proline-rich protein precursor compare
Ac3H11_1770 +0.4 1.4 Threonine dehydratase (EC 4.3.1.19) compare
Ac3H11_550 +0.4 2.7 Cation-transporting ATPase compare
Ac3H11_3476 +0.4 2.3 DNA primase (bacterial type) compare
Ac3H11_2571 +0.4 1.4 Outer membrane protein A precursor compare
Ac3H11_2453 +0.4 1.0 hypothetical protein compare
Ac3H11_1167 +0.4 3.0 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_630 +0.4 1.2 Transcriptional regulator, ArsR family compare
Ac3H11_547 +0.4 3.2 FIG00347536: hypothetical protein compare
Ac3H11_703 +0.4 1.3 FIG00538730: hypothetical protein compare
Ac3H11_3584 +0.4 2.0 putative flavodoxin compare
Ac3H11_2225 +0.4 3.1 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) compare
Ac3H11_3863 +0.4 1.5 Transcriptional activator protein LysR compare
Ac3H11_1465 +0.4 1.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Ac3H11_681 +0.4 3.4 Ribosome hibernation protein YhbH compare
Ac3H11_1270 +0.4 2.6 Transcriptional regulator, AraC family compare
Ac3H11_1626 +0.4 0.6 hypothetical protein compare
Ac3H11_1135 +0.4 0.8 Thiamin biosynthesis lipoprotein ApbE compare
Ac3H11_3482 +0.4 0.9 hypothetical protein compare
Ac3H11_501 +0.4 2.2 ABC-type multidrug transport system, permease component compare
Ac3H11_4571 +0.4 1.6 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
Ac3H11_1826 +0.4 2.0 Putative signal peptide protein compare
Ac3H11_4607 +0.4 1.4 FIG00643033: hypothetical protein compare
Ac3H11_655 +0.4 0.9 PAP2 family protein compare
Ac3H11_2719 +0.4 1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_1780 +0.4 2.2 Phosphodiesterase/alkaline phosphatase D compare
Ac3H11_2519 +0.4 1.5 hypothetical protein compare
Ac3H11_4220 +0.4 1.4 hypothetical protein compare
Ac3H11_3767 +0.4 0.7 phage-related hypothetical protein compare
Ac3H11_2690 +0.4 2.5 hypothetical protein compare
Ac3H11_549 +0.4 3.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Ac3H11_3560 +0.4 0.7 Flagellar transcriptional activator FlhD compare
Ac3H11_3364 +0.4 1.5 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Ac3H11_2963 +0.4 1.3 Nicotinamidase (EC 3.5.1.19) compare
Ac3H11_3615 +0.4 1.6 Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1) compare
Ac3H11_704 +0.4 3.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Ac3H11_2918 +0.4 1.3 Plectin 1 compare
Ac3H11_3592 +0.4 1.5 Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2) compare
Ac3H11_1609 +0.4 1.8 Transcriptional regulator, IclR family compare
Ac3H11_896 +0.4 2.9 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. compare
Ac3H11_1498 +0.4 1.9 Short-chain dehydrogenase/reductase SDR compare
Ac3H11_3254 +0.4 1.1 hypothetical protein compare
Ac3H11_3810 +0.4 0.7 Transcriptional regulator, TetR family compare
Ac3H11_4188 +0.4 2.2 hypothetical protein compare
Ac3H11_4385 +0.4 1.5 hypothetical protein compare
Ac3H11_4629 +0.4 2.0 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_4163 +0.4 1.8 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Ac3H11_4299 +0.4 1.1 FIG00347697: hypothetical protein compare
Ac3H11_2604 +0.4 0.5 Granule-associated protein compare
Ac3H11_1916 +0.4 1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Ac3H11_4644 +0.4 2.7 Aquaporin Z compare
Ac3H11_3518 +0.4 0.8 Rrf2-linked NADH-flavin reductase compare
Ac3H11_4980 +0.4 1.9 Cu(I)-responsive transcriptional regulator compare
Ac3H11_4638 +0.4 2.9 hypothetical protein compare
Ac3H11_888 +0.4 0.8 hypothetical protein compare
Ac3H11_2393 +0.4 1.4 hypothetical protein compare
Ac3H11_4899 +0.4 1.3 ABC transporter ATP-binding protein compare
Ac3H11_611 +0.4 1.1 Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor compare
Ac3H11_1574 +0.4 1.7 hypothetical protein compare
Ac3H11_865 +0.4 1.1 hypothetical protein compare
Ac3H11_3945 +0.4 1.1 Sensory histidine kinase QseC compare
Ac3H11_3768 +0.3 0.8 hypothetical protein compare
Ac3H11_3521 +0.3 1.8 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_4901 +0.3 2.6 amino acid ABC transporter, permease protein compare
Ac3H11_2424 +0.3 1.1 ATPase component BioM of energizing module of biotin ECF transporter compare


Specific Phenotypes

For 1 genes in this experiment