Experiment set4IT058 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 3

200 most important genes:

  gene name fitness t score description  
Xcc-8004.271.1 -4.2 -2.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.623.1 -4.1 -2.8 Phosphoserine phosphatase compare
Xcc-8004.884.1 -3.7 -6.6 Rod shape-determining protein MreD compare
Xcc-8004.1336.1 -3.0 -8.0 two-component system sensor protein compare
Xcc-8004.4824.1 -2.9 -11.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3395.1 -2.8 -3.8 Transcriptional regulator, GntR family compare
Xcc-8004.1241.1 -2.7 -5.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.5192.1 -2.7 -11.2 hypothetical protein compare
Xcc-8004.4286.1 -2.6 -8.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.2921.1 -2.5 -3.4 ferrous iron transport protein compare
Xcc-8004.1236.1 -2.4 -6.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.5193.1 -2.4 -15.9 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.3433.1 -2.3 -7.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.4948.1 -2.3 -1.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4737.1 -2.2 -4.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.1763.1 -2.1 -3.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1727.1 -2.1 -3.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1282.1 -2.0 -5.3 sulfur deprivation response regulator compare
Xcc-8004.4732.1 -2.0 -2.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1871.1 -1.9 -3.4 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3346.1 -1.9 -2.8 hypothetical protein compare
Xcc-8004.2217.1 -1.9 -3.3 FIG01209779: hypothetical protein compare
Xcc-8004.907.1 -1.7 -10.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.4596.1 -1.7 -8.3 hypothetical protein compare
Xcc-8004.2569.1 -1.6 -1.8 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3054.1 -1.6 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4039.1 -1.6 -2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1359.1 -1.6 -5.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4616.1 -1.6 -6.7 Sensor histidine kinase compare
Xcc-8004.2386.1 -1.6 -10.0 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.4026.1 -1.6 -5.2 FIG01209666: hypothetical protein compare
Xcc-8004.495.1 -1.5 -5.8 EpiH/GdmH-related protein compare
Xcc-8004.4620.1 -1.5 -6.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2335.1 -1.5 -5.4 Transport ATP-binding protein CydC compare
Xcc-8004.3655.1 -1.5 -1.5 FIG01210025: hypothetical protein compare
Xcc-8004.3208.1 -1.5 -1.6 Methyltransferase type 12 compare
Xcc-8004.1436.1 -1.5 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.2346.1 -1.5 -2.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4457.1 -1.4 -4.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.2079.1 -1.4 -2.8 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3230.1 -1.4 -2.7 Phage DNA invertase compare
Xcc-8004.4112.1 -1.4 -3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3321.1 -1.3 -1.7 FIG01209847: hypothetical protein compare
Xcc-8004.659.1 -1.3 -2.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1511.1 -1.3 -2.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2920.1 -1.3 -6.1 Ferrous iron transport protein B compare
Xcc-8004.2266.1 -1.3 -1.5 FIG01211351: hypothetical protein compare
Xcc-8004.2922.1 -1.2 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.5352.1 -1.2 -2.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.1380.1 -1.2 -1.8 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3310.1 -1.2 -3.5 Chromosome partition protein smc compare
Xcc-8004.5368.1 -1.2 -2.2 FIG01210868: hypothetical protein compare
Xcc-8004.3385.1 -1.2 -2.7 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.3855.1 -1.1 -5.7 FIG01209965: hypothetical protein compare
Xcc-8004.589.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.4170.1 -1.1 -1.7 LSU ribosomal protein L25p compare
Xcc-8004.3862.1 -1.1 -4.0 Septum site-determining protein MinC compare
Xcc-8004.1226.1 -1.1 -1.3 FIG01210021: hypothetical protein compare
Xcc-8004.4025.1 -1.1 -6.3 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4738.1 -1.1 -5.9 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.914.1 -1.1 -5.0 tail-specific protease compare
Xcc-8004.2385.1 -1.1 -5.7 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.5019.1 -1.1 -1.6 FIG01210147: hypothetical protein compare
Xcc-8004.3103.1 -1.1 -2.2 hypothetical protein compare
Xcc-8004.1491.1 -1.0 -7.8 Glycosyltransferase compare
Xcc-8004.2334.1 -1.0 -4.0 Transport ATP-binding protein CydD compare
Xcc-8004.461.1 -1.0 -2.6 Transcriptional regulator, MarR family compare
Xcc-8004.4473.1 -1.0 -7.6 FIG01212400: hypothetical protein compare
Xcc-8004.4503.1 -1.0 -3.6 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4200.1 -1.0 -1.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4464.1 -1.0 -4.9 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.4465.1 -1.0 -3.9 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.4486.1 -1.0 -7.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1841.1 -1.0 -2.2 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.29.1 -1.0 -4.2 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.3498.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.564.1 -1.0 -1.5 Mobile element protein compare
Xcc-8004.4251.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.2081.1 -1.0 -2.3 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.4694.1 -1.0 -2.3 FIG01210824: hypothetical protein compare
Xcc-8004.234.1 -1.0 -5.7 cardiolipin synthase compare
Xcc-8004.3796.1 -1.0 -2.5 Putative SigmaB asociated two-component system sensor protein compare
Xcc-8004.1108.1 -0.9 -2.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4481.1 -0.9 -4.1 hypothetical protein compare
Xcc-8004.5231.1 -0.9 -3.3 hypothetical protein compare
Xcc-8004.130.1 -0.9 -4.1 hypothetical protein compare
Xcc-8004.4514.1 -0.9 -6.7 Glycosyltransferase compare
Xcc-8004.3861.1 -0.9 -3.6 FIG01210504: hypothetical protein compare
Xcc-8004.930.1 -0.9 -5.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.3676.1 -0.9 -2.0 Translation elongation factor LepA compare
Xcc-8004.3049.1 -0.9 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.270.1 -0.9 -3.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.5201.1 -0.9 -1.7 FIG01211164: hypothetical protein compare
Xcc-8004.3923.1 -0.9 -1.5 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3898.1 -0.9 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.968.1 -0.9 -4.8 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.5185.1 -0.9 -1.0 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.1906.1 -0.9 -2.4 lipoprotein compare
Xcc-8004.950.1 -0.8 -1.4 General secretion pathway protein L compare
Xcc-8004.4339.1 -0.8 -2.0 FIG01211792: hypothetical protein compare
Xcc-8004.4976.1 -0.8 -5.8 hypothetical protein compare
Xcc-8004.127.1 -0.8 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.5367.1 -0.8 -3.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.2168.1 -0.8 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.4105.1 -0.8 -1.0 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.108.1 -0.8 -2.3 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.574.1 -0.8 -3.7 Di-/tripeptide transporter compare
Xcc-8004.1172.1 -0.8 -1.8 Transcriptional regulator compare
Xcc-8004.2169.1 -0.8 -2.1 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.4775.1 -0.8 -3.8 Cell division protein FtsX compare
Xcc-8004.4485.1 -0.8 -4.7 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.543.1 -0.8 -2.0 FIG01210004: hypothetical protein compare
Xcc-8004.4441.1 -0.8 -2.1 Tyrosine recombinase XerD compare
Xcc-8004.2420.1 -0.8 -3.7 PHA synthase subunit compare
Xcc-8004.3721.1 -0.8 -1.2 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2831.1 -0.8 -3.7 Flagellar synthesis regulator FleN compare
Xcc-8004.4210.1 -0.8 -2.8 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.736.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.4877.1 -0.8 -6.7 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.3681.1 -0.8 -4.3 RNA polymerase sigma factor RpoE compare
Xcc-8004.3881.1 -0.8 -1.9 hypothetical protein compare
Xcc-8004.4046.1 -0.8 -4.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1581.1 -0.8 -6.8 hypothetical protein compare
Xcc-8004.2333.1 -0.7 -3.9 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4221.1 -0.7 -2.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.4517.1 -0.7 -4.1 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.955.1 -0.7 -2.1 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.3304.1 -0.7 -1.1 FIG01211108: hypothetical protein compare
Xcc-8004.2326.1 -0.7 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.4752.1 -0.7 -0.9 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.2406.1 -0.7 -4.2 Manganese transport protein MntH compare
Xcc-8004.2343.1 -0.7 -1.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1568.1 -0.7 -1.0 Glycine cleavage system H protein compare
Xcc-8004.4275.1 -0.7 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4739.1 -0.7 -2.0 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1858.1 -0.7 -0.6 FIG01211170: hypothetical protein compare
Xcc-8004.4298.1 -0.7 -2.4 Hemin uptake protein compare
Xcc-8004.5365.1 -0.7 -3.2 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.3754.1 -0.7 -1.5 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.399.1 -0.7 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.279.1 -0.7 -1.7 FIG01210420: hypothetical protein compare
Xcc-8004.4204.1 -0.7 -1.3 FIG01210014: hypothetical protein compare
Xcc-8004.636.1 -0.7 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Xcc-8004.2660.1 -0.7 -2.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.807.1 -0.7 -1.6 FIG01212592: hypothetical protein compare
Xcc-8004.4806.1 -0.7 -1.2 FIG01211609: hypothetical protein compare
Xcc-8004.4467.1 -0.7 -2.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.358.1 -0.7 -1.8 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Xcc-8004.3702.1 -0.7 -1.5 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2497.1 -0.7 -0.8 Mobile element protein compare
Xcc-8004.2358.1 -0.7 -3.4 Segregation and condensation protein A compare
Xcc-8004.3492.1 -0.6 -0.8 FIG01211425: hypothetical protein compare
Xcc-8004.986.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.932.1 -0.6 -2.4 histidine kinase/response regulator hybrid protein compare
Xcc-8004.3483.1 -0.6 -3.2 Outer membrane protein A precursor compare
Xcc-8004.5012.1 -0.6 -1.5 FIG01211480: hypothetical protein compare
Xcc-8004.2561.1 -0.6 -3.5 FIG01213638: hypothetical protein compare
Xcc-8004.1689.1 -0.6 -3.1 Nikel transport family protein NikM compare
Xcc-8004.4935.1 -0.6 -1.8 FIG01213190: hypothetical protein compare
Xcc-8004.1564.1 -0.6 -2.1 Protein of unknown function UPF0060 compare
Xcc-8004.4092.1 -0.6 -3.7 FIG01209901: hypothetical protein compare
Xcc-8004.1164.1 -0.6 -1.9 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.3154.1 -0.6 -1.4 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.3742.1 -0.6 -1.2 Type III effector compare
Xcc-8004.3013.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.2450.1 -0.6 -4.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1797.1 -0.6 -1.9 Aldo-keto reductase compare
Xcc-8004.1755.1 -0.6 -2.1 COG2879, Hypothetical small protein yjiX compare
Xcc-8004.4505.1 -0.6 -2.9 membrane protein WxcE compare
Xcc-8004.1654.1 -0.6 -1.1 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.3722.1 -0.6 -0.8 HrpB7 protein compare
Xcc-8004.3663.1 -0.6 -1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.1566.1 -0.6 -1.1 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.773.1 -0.6 -2.0 Transcriptional regulator marR family compare
Xcc-8004.2630.1 -0.6 -3.0 Adsorption protein compare
Xcc-8004.4759.1 -0.6 -4.5 protease IV compare
Xcc-8004.3099.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.4501.1 -0.6 -2.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.2086.1 -0.6 -1.1 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.2421.1 -0.6 -4.6 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.3120.1 -0.6 -1.2 RNA-binding protein Hfq compare
Xcc-8004.742.1 -0.6 -1.8 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.1677.1 -0.6 -1.8 FIG01209993: hypothetical protein compare
Xcc-8004.3595.1 -0.6 -1.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.4168.1 -0.6 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.5205.1 -0.6 -1.6 FIG01210461: hypothetical protein compare
Xcc-8004.3503.1 -0.6 -1.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.5366.1 -0.6 -4.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4731.1 -0.6 -1.7 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Xcc-8004.4561.1 -0.6 -2.0 Sensor histidine kinase compare
Xcc-8004.2952.1 -0.6 -2.9 transcriptional regulator, Crp/Fnr family compare
Xcc-8004.1467.1 -0.6 -1.4 FIG01210828: hypothetical protein compare
Xcc-8004.638.1 -0.6 -3.5 Bacterioferritin compare
Xcc-8004.5333.1 -0.6 -1.8 Transposase (class I) compare
Xcc-8004.312.1 -0.6 -2.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.4466.1 -0.6 -2.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.2260.1 -0.5 -2.2 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.683.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.1126.1 -0.5 -1.1 Electron transfer protein azurin I compare
Xcc-8004.3853.1 -0.5 -0.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms