Experiment set4IT058 for Pseudomonas fluorescens SBW25-INTG

Compare to:

no extra nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -6.1 -4.2 S41 family peptidase compare
PFLU_RS03645 -5.9 -9.9 tetratricopeptide repeat protein compare
PFLU_RS28695 -5.0 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS14550 -4.7 -6.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS06320 -4.4 -4.2 OmpH family outer membrane protein compare
PFLU_RS26545 -4.1 -14.0 sel1 repeat family protein compare
PFLU_RS24125 -4.0 -3.9 cold-shock protein compare
PFLU_RS04070 -3.9 -2.7 peptide chain release factor 3 compare
PFLU_RS29095 -3.7 -26.6 polyphosphate kinase 1 compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS28645 -3.4 -16.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22740 -3.2 -5.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS22095 -3.2 -20.8 GTP diphosphokinase compare
PFLU_RS23920 -3.2 -3.6 septation protein A compare
PFLU_RS24485 -3.2 -13.6 hypothetical protein compare
PFLU_RS25760 -3.2 -14.3 glucose-6-phosphate isomerase compare
PFLU_RS12980 -2.9 -10.1 nitrite/sulfite reductase compare
PFLU_RS09055 -2.9 -3.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS21495 -2.8 -2.7 TlpA family protein disulfide reductase compare
PFLU_RS02490 -2.8 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS12975 -2.8 -6.0 DUF934 domain-containing protein compare
PFLU_RS01685 -2.7 -5.8 nitrogen regulation protein NR(I) compare
PFLU_RS25225 -2.7 -11.1 disulfide bond formation protein B compare
PFLU_RS25735 -2.6 -8.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04430 -2.6 -8.7 ATP-binding cassette domain-containing protein compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS02045 -2.6 -19.8 glutamate synthase large subunit compare
PFLU_RS18505 -2.6 -11.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS26770 -2.5 -14.0 DedA family protein compare
PFLU_RS02050 -2.5 -14.9 NAD(P)-binding protein compare
PFLU_RS01690 -2.5 -7.5 nitrogen regulation protein NR(II) compare
PFLU_RS09980 -2.5 -17.0 peptidase S41 compare
PFLU_RS25755 -2.4 -4.5 pantoate--beta-alanine ligase compare
PFLU_RS29885 -2.4 -10.2 LysR family transcriptional regulator compare
PFLU_RS25920 -2.3 -4.3 outer membrane protein assembly factor BamE compare
PFLU_RS26640 -2.3 -11.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS29875 -2.3 -14.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS13750 -2.3 -2.3 hypothetical protein compare
PFLU_RS29880 -2.3 -12.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS26595 -2.2 -1.5 lipoprotein compare
PFLU_RS24085 -2.2 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS07785 -2.2 -11.5 VacJ family lipoprotein compare
PFLU_RS04445 -2.2 -7.2 ABC transporter substrate-binding protein compare
PFLU_RS23585 -2.2 -9.1 GntP family permease compare
PFLU_RS23065 -2.2 -10.4 phosphate acyltransferase PlsX compare
PFLU_RS21360 -2.2 -2.5 MarR family transcriptional regulator compare
PFLU_RS04440 -2.1 -9.7 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS19165 -2.1 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS23310 -2.1 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS18530 -2.1 -4.8 DNA translocase FtsK compare
PFLU_RS00210 -2.0 -2.0 OsmC family protein compare
PFLU_RS08505 -2.0 -7.1 protease HtpX compare
PFLU_RS18670 -2.0 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS07650 -2.0 -12.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS23305 -2.0 -10.3 arginine N-succinyltransferase compare
PFLU_RS22105 -1.9 -5.7 cysteine synthase CysM compare
PFLU_RS25750 -1.9 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08370 -1.9 -5.3 hypothetical protein compare
PFLU_RS24330 -1.9 -6.9 phosphogluconate dehydratase compare
PFLU_RS04435 -1.9 -6.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS17545 -1.8 -1.7 DUF465 domain-containing protein compare
PFLU_RS05780 -1.8 -10.4 helix-turn-helix transcriptional regulator compare
PFLU_RS26735 -1.8 -8.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS03075 -1.8 -2.0 translation initiation factor Sui1 compare
PFLU_RS29515 -1.8 -9.1 RidA family protein compare
PFLU_RS12800 -1.7 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18675 -1.7 -1.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS01020 -1.7 -3.2 LysR family transcriptional regulator compare
PFLU_RS27440 -1.6 -6.2 nucleotidyltransferase family protein compare
PFLU_RS24785 -1.6 -8.2 outer membrane protein assembly factor BamB compare
PFLU_RS18625 -1.6 -5.5 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS04465 -1.6 -7.0 ATP phosphoribosyltransferase compare
PFLU_RS01960 -1.6 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS22395 -1.6 -3.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS29490 -1.6 -7.5 ribonuclease PH compare
PFLU_RS14820 -1.6 -4.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS26565 -1.6 -2.2 rRNA maturation RNase YbeY compare
PFLU_RS01625 -1.6 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00195 -1.6 -1.6 dodecin domain-containing protein compare
PFLU_RS12175 -1.6 -1.6 methyl-accepting chemotaxis protein compare
PFLU_RS02775 -1.6 -1.8 urease accessory protein UreF compare
PFLU_RS13540 -1.6 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS30160 -1.5 -3.5 ParB/RepB/Spo0J family partition protein compare
PFLU_RS27365 -1.5 -7.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS03770 -1.5 -9.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS02310 -1.5 -5.1 LPS kinase compare
PFLU_RS21300 -1.5 -5.3 cysteine hydrolase compare
PFLU_RS23725 -1.5 -9.6 glucose-6-phosphate dehydrogenase compare
PFLU_RS06555 -1.5 -7.4 OmpA family protein compare
PFLU_RS07640 -1.5 -7.3 universal stress protein compare
PFLU_RS03610 -1.5 -5.8 redox-regulated ATPase YchF compare
PFLU_RS25730 -1.5 -10.6 PAS domain S-box protein compare
PFLU_RS04740 -1.5 -3.8 hypothetical protein compare
PFLU_RS04385 -1.5 -7.8 RNase adapter RapZ compare
PFLU_RS26490 -1.5 -3.8 cation diffusion facilitator family transporter compare
PFLU_RS24790 -1.5 -4.7 tetratricopeptide repeat protein compare
PFLU_RS25815 -1.5 -1.1 transcription termination/antitermination protein NusA compare
PFLU_RS23070 -1.5 -1.3 50S ribosomal protein L32 compare
PFLU_RS28690 -1.4 -9.0 FAD-binding oxidoreductase compare
PFLU_RS20540 -1.4 -8.1 phosphoribosylanthranilate isomerase compare
PFLU_RS02460 -1.4 -8.5 alpha/beta fold hydrolase compare
PFLU_RS22070 -1.4 -3.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS28320 -1.4 -1.9 glutathione synthase compare
PFLU_RS06265 -1.4 -11.3 [protein-PII] uridylyltransferase compare
PFLU_RS26905 -1.4 -7.3 transcriptional regulator NrdR compare
PFLU_RS27620 -1.4 -10.6 acyl-CoA dehydrogenase compare
PFLU_RS08155 -1.4 -3.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04650 -1.4 -10.2 ABC transporter substrate-binding protein compare
PFLU_RS30345 -1.4 -2.2 DUF2559 family protein compare
PFLU_RS29755 -1.4 -8.0 phosphate ABC transporter ATP-binding protein compare
PFLU_RS28650 -1.4 -5.0 RNA pyrophosphohydrolase compare
PFLU_RS29065 -1.4 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS28725 -1.4 -8.0 DUF2059 domain-containing protein compare
PFLU_RS30645 -1.4 -2.9 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS20515 -1.4 -4.1 amidophosphoribosyltransferase compare
PFLU_RS24090 -1.4 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS26020 -1.3 -8.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS31535 -1.3 -1.9 hypothetical protein compare
PFLU_RS07255 -1.3 -3.4 sulfurtransferase TusA family protein compare
PFLU_RS20580 -1.3 -8.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23380 -1.3 -0.9 HAD-IB family hydrolase compare
PFLU_RS01005 -1.3 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS27645 -1.3 -7.8 8-amino-7-oxononanoate synthase compare
PFLU_RS04325 -1.3 -9.2 ribonuclease G compare
PFLU_RS19175 -1.3 -5.6 trigger factor compare
PFLU_RS27650 -1.3 -8.3 biotin synthase BioB compare
PFLU_RS13045 -1.3 -4.9 AAA domain-containing protein compare
PFLU_RS18655 -1.2 -2.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS25645 -1.2 -1.6 acetolactate synthase small subunit compare
PFLU_RS03970 -1.2 -6.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04315 -1.2 -2.8 rod shape-determining protein MreD compare
PFLU_RS29195 -1.2 -5.8 heme biosynthesis protein HemY compare
PFLU_RS18665 -1.2 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29285 -1.2 -2.1 HAD-IA family hydrolase compare
PFLU_RS24765 -1.2 -9.8 2-isopropylmalate synthase compare
PFLU_RS18055 -1.2 -1.9 hydrolase compare
PFLU_RS00175 -1.2 -6.1 tryptophan synthase subunit alpha compare
PFLU_RS00465 -1.2 -6.7 spore maturation protein compare
PFLU_RS15610 -1.2 -3.9 helix-turn-helix transcriptional regulator compare
PFLU_RS02790 -1.2 -1.1 TetR family transcriptional regulator compare
PFLU_RS19935 -1.2 -1.8 type II secretion system protein GspF compare
PFLU_RS00530 -1.2 -2.2 DUF2388 domain-containing protein compare
PFLU_RS27635 -1.2 -6.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS28195 -1.2 -7.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS22605 -1.2 -5.6 mechanosensitive ion channel compare
PFLU_RS24670 -1.1 -2.1 HigA family addiction module antidote protein compare
PFLU_RS01650 -1.1 -4.9 murein hydrolase activator EnvC compare
PFLU_RS04220 -1.1 -5.9 FadR family transcriptional regulator compare
PFLU_RS05610 -1.1 -5.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07275 -1.1 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS15990 -1.1 -1.9 SDR family oxidoreductase compare
PFLU_RS30165 -1.1 -5.4 ParA family protein compare
PFLU_RS02590 -1.1 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20575 -1.1 -3.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02370 -1.1 -5.6 glycosyltransferase compare
PFLU_RS11505 -1.1 -1.4 ABC transporter substrate-binding protein compare
PFLU_RS07225 -1.1 -7.8 L-aspartate oxidase compare
PFLU_RS01900 -1.1 -5.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS03765 -1.1 -6.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01610 -1.1 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS16785 -1.1 -2.2 GAF domain-containing protein compare
PFLU_RS24095 -1.1 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS23590 -1.1 -1.2 gluconokinase compare
PFLU_RS23240 -1.1 -6.5 magnesium transporter compare
PFLU_RS13010 -1.1 -3.1 Fe-S biogenesis protein NfuA compare
PFLU_RS28965 -1.1 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29765 -1.1 -8.0 ABC transporter permease subunit compare
PFLU_RS25925 -1.0 -2.2 RnfH family protein compare
PFLU_RS31100 -1.0 -2.7 preprotein translocase subunit SecG compare
PFLU_RS31200 -1.0 -3.4 hypothetical protein compare
PFLU_RS19875 -1.0 -2.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS14825 -1.0 -5.9 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
PFLU_RS03865 -1.0 -4.6 outer membrane protein assembly factor BamD compare
PFLU_RS02000 -1.0 -8.9 penicillin-binding protein 1A compare
PFLU_RS29745 -1.0 -2.6 response regulator compare
PFLU_RS18640 -1.0 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS28535 -1.0 -7.0 dihydroxy-acid dehydratase compare
PFLU_RS00180 -1.0 -4.8 tryptophan synthase subunit beta compare
PFLU_RS07695 -1.0 -2.3 beta-N-acetylhexosaminidase compare
PFLU_RS27640 -1.0 -1.0 alpha/beta fold hydrolase compare
PFLU_RS22010 -1.0 -4.7 threonine-phosphate decarboxylase compare
PFLU_RS25595 -1.0 -1.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS09305 -1.0 -7.1 hypothetical protein compare
PFLU_RS24145 -1.0 -4.1 mechanosensitive ion channel compare
PFLU_RS19170 -1.0 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS19910 -1.0 -1.3 hypothetical protein compare
PFLU_RS29900 -1.0 -5.7 DNA helicase II compare
PFLU_RS28325 -1.0 -4.6 energy transducer TonB compare
PFLU_RS27630 -1.0 -3.3 dethiobiotin synthase compare
PFLU_RS05585 -1.0 -3.1 MtnX-like HAD-IB family phosphatase compare
PFLU_RS23130 -1.0 -4.0 response regulator transcription factor compare
PFLU_RS17490 -1.0 -3.4 glutaminase B compare
PFLU_RS08065 -1.0 -4.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS08365 -1.0 -7.0 L,D-transpeptidase family protein compare
PFLU_RS28285 -1.0 -1.5 hypothetical protein compare
PFLU_RS25800 -1.0 -4.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS08665 -1.0 -1.4 cytochrome c maturation protein CcmE compare
PFLU_RS02990 -0.9 -3.7 precorrin-3B C(17)-methyltransferase compare
PFLU_RS31800 -0.9 -1.1 hypothetical protein compare
PFLU_RS16715 -0.9 -5.7 nitrite reductase large subunit conserved


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms