Experiment set4IT057 for Methanococcus maripaludis S2

Compare to:

Formate deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01455 -9.9 -9.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07845 -9.5 -4.5 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -9.1 -10.9 2-isopropylmalate synthase compare
MMP_RS03450 -8.7 -4.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS06685 -8.6 -11.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS04215 -8.6 -11.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06700 -8.3 -15.0 hypothetical protein compare
MMP_RS06715 -8.2 -19.1 cache domain-containing protein compare
MMP_RS04605 -8.0 -5.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06350 -7.8 -7.9 HesA/MoeB/ThiF family protein compare
MMP_RS05515 -7.5 -9.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07345 -7.4 -7.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS06355 -7.3 -4.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06720 -7.3 -6.9 response regulator transcription factor compare
MMP_RS03015 -7.3 -14.0 GTP 3' 8-cyclase MoaA compare
MMP_RS06375 -7.3 -5.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06680 -7.1 -16.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS09020 -7.1 -3.3 hypothetical protein compare
MMP_RS06705 -7.0 -7.4 formate/nitrite transporter family protein compare
MMP_RS08715 -6.9 -3.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06975 -6.7 -3.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03035 -6.5 -6.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01545 -6.5 -1.8 CBS domain-containing protein compare
MMP_RS06345 -6.4 -9.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03435 -6.4 -3.4 ketol-acid reductoisomerase compare
MMP_RS07730 -6.1 -3.7 pyruvate synthase subunit beta compare
MMP_RS01020 -6.1 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01380 -5.9 -7.5 PHP domain-containing protein compare
MMP_RS07365 -5.9 -12.0 2-phosphoglycerate kinase compare
MMP_RS06270 -5.8 -8.2 TIGR00300 family protein compare
MMP_RS04620 -5.8 -19.5 cobalt transporter CbiM compare
MMP_RS07380 -5.7 -4.8 transcription elongation factor Spt5 compare
MMP_RS05265 -5.7 -3.7 2-isopropylmalate synthase compare
MMP_RS01175 -5.6 -5.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08460 -5.5 -4.6 proteasome-activating nucleotidase compare
MMP_RS07635 -5.4 -10.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08635 -5.4 -3.5 UbiA family prenyltransferase compare
MMP_RS01005 -5.3 -2.0 riboflavin synthase compare
MMP_RS06230 -5.3 -5.1 helix-turn-helix domain-containing protein compare
MMP_RS02145 -5.1 -12.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS01500 -5.1 -4.3 CBS domain-containing protein compare
MMP_RS04615 -5.0 -5.9 PDGLE domain-containing protein compare
MMP_RS07185 -4.9 -16.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00300 -4.9 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05930 -4.9 -5.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS03640 -4.9 -7.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01385 -4.8 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05550 -4.8 -1.3 cation:proton antiporter compare
MMP_RS00295 -4.8 -4.1 gamma carbonic anhydrase family protein compare
MMP_RS05095 -4.7 -13.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS04780 -4.7 -5.3 ribonuclease P compare
MMP_RS05085 -4.7 -14.6 AAA family ATPase compare
MMP_RS08105 -4.7 -10.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS06400 -4.7 -3.3 4Fe-4S binding protein compare
MMP_RS03315 -4.6 -2.7 ferrous iron transport protein A compare
MMP_RS08100 -4.6 -15.8 8-amino-7-oxononanoate synthase compare
MMP_RS04500 -4.6 -18.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08745 -4.6 -12.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05100 -4.5 -23.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06730 -4.5 -3.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS03600 -4.5 -4.4 triose-phosphate isomerase compare
MMP_RS02280 -4.5 -1.7 DUF211 domain-containing protein compare
MMP_RS06340 -4.4 -9.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05425 -4.4 -7.9 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05055 -4.4 -17.3 DUF166 domain-containing protein compare
MMP_RS00305 -4.4 -4.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS01700 -4.4 -1.7 dihydroxy-acid dehydratase compare
MMP_RS06370 -4.3 -6.3 biotin synthase BioB compare
MMP_RS05080 -4.3 -17.7 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05090 -4.3 -16.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05075 -4.3 -19.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06625 -4.2 -3.4 DNA primase compare
MMP_RS08820 -4.2 -7.5 hypothetical protein compare
MMP_RS08095 -4.2 -11.9 dethiobiotin synthase compare
MMP_RS05070 -4.2 -13.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS03445 -4.1 -1.9 methanogenesis marker 17 protein compare
MMP_RS08720 -4.0 -3.4 4Fe-4S binding protein compare
MMP_RS04890 -4.0 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07445 -4.0 -6.1 helix-turn-helix domain-containing protein compare
MMP_RS06020 -4.0 -6.5 archaeoflavoprotein AfpA compare
MMP_RS04685 -3.9 -4.2 DUF126 domain-containing protein compare
MMP_RS07735 -3.9 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07600 -3.9 -6.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07645 -3.9 -11.3 aldehyde dehydrogenase family protein compare
MMP_RS01795 -3.9 -3.6 methanogenesis marker 6 protein compare
MMP_RS06295 -3.9 -8.5 methanogenesis marker 14 protein compare
MMP_RS05060 -3.9 -13.7 AAA family ATPase compare
MMP_RS02195 -3.8 -6.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06315 -3.8 -2.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00685 -3.8 -5.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06895 -3.8 -3.1 selenocysteine-specific translation elongation factor compare
MMP_RS06120 -3.7 -3.7 UPF0147 family protein compare
MMP_RS06630 -3.7 -1.9 UPF0058 family protein compare
MMP_RS07005 -3.7 -1.4 4Fe-4S binding protein compare
MMP_RS01755 -3.6 -2.4 DUF2097 domain-containing protein compare
MMP_RS05555 -3.6 -2.2 DUF4040 domain-containing protein compare
MMP_RS02010 -3.6 -13.8 PHP domain-containing protein compare
MMP_RS02355 -3.6 -5.2 30S ribosomal protein S27ae compare
MMP_RS07605 -3.6 -5.5 diadenylate cyclase compare
MMP_RS01325 -3.6 -3.6 dihydroneopterin aldolase family protein compare
MMP_RS08240 -3.5 -10.3 methanogenesis marker 16 metalloprotein compare
MMP_RS05065 -3.5 -8.7 CooT family nickel-binding protein compare
MMP_RS07195 -3.5 -12.0 M20 family metallo-hydrolase compare
MMP_RS07630 -3.5 -2.3 ATP-binding cassette domain-containing protein compare
MMP_RS07390 -3.5 -3.9 cell division protein FtsZ compare
MMP_RS00515 -3.4 -1.8 DUF655 domain-containing protein compare
MMP_RS07580 -3.4 -5.4 DUF356 domain-containing protein compare
MMP_RS08645 -3.3 -11.1 UPF0179 family protein compare
MMP_RS01800 -3.3 -6.4 TIGR00303 family protein compare
MMP_RS05845 -3.2 -3.4 tRNA-intron lyase compare
MMP_RS01610 -3.2 -6.7 hypothetical protein compare
MMP_RS08300 -3.2 -1.9 metal-sulfur cluster assembly factor compare
MMP_RS02240 -3.2 -5.1 methanogenesis marker 7 protein compare
MMP_RS07525 -3.2 -8.2 4Fe-4S binding protein compare
MMP_RS00290 -3.2 -9.2 hypothetical protein compare
MMP_RS06285 -3.2 -4.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05875 -3.1 -6.1 hydroxyethylthiazole kinase compare
MMP_RS08790 -3.1 -2.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS04585 -3.1 -10.5 AIR synthase related protein compare
MMP_RS03420 -3.1 -3.7 acetolactate synthase small subunit compare
MMP_RS03025 -3.1 -7.6 molybdenum cofactor guanylyltransferase compare
MMP_RS02875 -3.1 -15.9 chorismate pyruvate-lyase family protein compare
MMP_RS05925 -3.0 -6.5 small nuclear ribonucleoprotein compare
MMP_RS07545 -3.0 -2.3 HTH domain-containing protein compare
MMP_RS01225 -3.0 -7.4 DUF5379 domain-containing protein compare
MMP_RS03400 -3.0 -3.4 archease compare
MMP_RS06925 -2.9 -4.7 ribonuclease VapC4 compare
MMP_RS01830 -2.9 -2.8 tRNA-Val compare
MMP_RS08650 -2.9 -4.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08165 -2.9 -3.9 phosphoglycerate dehydrogenase compare
MMP_RS07575 -2.8 -6.3 RNA ligase partner protein compare
MMP_RS05920 -2.8 -1.3 50S ribosomal protein L37e compare
MMP_RS08210 -2.8 -4.4 phosphatidylglycerophosphatase A compare
MMP_RS04790 -2.8 -12.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00750 -2.7 -3.7 fumarate hydratase compare
MMP_RS01985 -2.7 -6.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01220 -2.7 -12.4 hypothetical protein compare
MMP_RS03960 -2.7 -1.7 hypothetical protein compare
MMP_RS02340 -2.7 -2.8 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00695 -2.6 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00895 -2.6 -7.6 hypothetical protein compare
MMP_RS00115 -2.6 -17.7 radical SAM protein compare
MMP_RS07200 -2.6 -11.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05850 -2.5 -5.6 Ldh family oxidoreductase compare
MMP_RS01265 -2.5 -4.6 hypothetical protein compare
MMP_RS00455 -2.4 -12.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS08330 -2.4 -5.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS02235 -2.3 -10.5 CBS domain-containing protein compare
MMP_RS04870 -2.3 -6.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS01725 -2.3 -8.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS05430 -2.3 -6.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS01475 -2.3 -7.9 phosphosulfolactate synthase compare
MMP_RS05345 -2.3 -7.8 hypothetical protein compare
MMP_RS05765 -2.3 -8.5 M42 family metallopeptidase compare
MMP_RS06130 -2.2 -5.3 peptidylprolyl isomerase compare
MMP_RS06105 -2.2 -10.0 hydrogenase maturation peptidase HycI compare
MMP_RS02170 -2.2 -7.8 CBS domain-containing protein compare
MMP_RS01900 -2.2 -12.4 hypothetical protein compare
MMP_RS06885 -2.2 -5.4 50S ribosome-binding GTPase compare
MMP_RS07710 -2.2 -13.0 cell division protein FtsZ compare
MMP_RS00985 -2.2 -7.0 CDC48 family AAA ATPase compare
MMP_RS06475 -2.2 -5.0 FAD-dependent oxidoreductase compare
MMP_RS01905 -2.1 -12.9 glycosyltransferase compare
MMP_RS00110 -2.1 -3.8 hypothetical protein compare
MMP_RS02900 -2.0 -1.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05440 -2.0 -11.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS02345 -2.0 -3.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01925 -2.0 -9.6 DUF1616 domain-containing protein compare
MMP_RS06930 -2.0 -11.7 MBL fold metallo-hydrolase compare
MMP_RS07555 -2.0 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS08760 -2.0 -2.9 hypothetical protein compare
MMP_RS06215 -2.0 -4.1 30S ribosomal protein S6e compare
MMP_RS07075 -1.9 -5.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS01910 -1.9 -10.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03580 -1.9 -5.3 signal recognition particle-docking protein FtsY compare
MMP_RS00320 -1.9 -3.5 class I SAM-dependent methyltransferase compare
MMP_RS01915 -1.9 -12.3 DUF354 domain-containing protein compare
MMP_RS08445 -1.9 -5.4 DUF2099 family protein compare
MMP_RS02190 -1.9 -5.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS06175 -1.8 -7.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS03205 -1.8 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01365 -1.8 -2.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05540 -1.8 -3.2 hypothetical protein compare
MMP_RS04710 -1.8 -2.4 hypothetical protein compare
MMP_RS07385 -1.8 -1.6 protein translocase SEC61 complex subunit gamma compare
MMP_RS01955 -1.8 -2.0 hypothetical protein compare
MMP_RS02135 -1.8 -4.1 DUF5612 domain-containing protein compare
MMP_RS06940 -1.8 -3.4 polyprenyl diphosphate synthase compare
MMP_RS01720 -1.8 -1.3 replication factor C large subunit compare
MMP_RS01895 -1.7 -11.4 flippase compare
MMP_RS04720 -1.7 -4.0 DedA family protein compare
MMP_RS01885 -1.7 -8.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07955 -1.7 -4.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS04775 -1.7 -4.0 adenosylhomocysteinase compare
MMP_RS01960 -1.7 -1.2 hypothetical protein compare
MMP_RS08435 -1.6 -1.8 Era-like GTP-binding protein compare
MMP_RS01920 -1.6 -11.7 glycosyltransferase family 2 protein compare
MMP_RS06310 -1.6 -4.0 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01975 -1.6 -11.4 hypothetical protein compare
MMP_RS00720 -1.6 -7.8 metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms