Experiment set4IT056 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Furfuryl Alcohol 0.125 vol%

200 most important genes:

  gene name fitness t score description  
AO353_09315 -3.5 -11.4 LysR family transcriptional regulator compare
AO353_22685 -3.4 -3.3 peroxidase compare
AO353_02070 -3.0 -8.2 prephenate dehydratase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_10670 -2.9 -8.8 shikimate dehydrogenase compare
AO353_09040 -2.8 -3.2 diaminopimelate epimerase compare
AO353_18540 -2.4 -2.8 pseudouridine synthase compare
AO353_12115 -2.3 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03615 -2.3 -4.0 cold-shock protein compare
AO353_00310 -2.3 -9.3 transaldolase compare
AO353_07355 -2.3 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00825 -2.1 -4.9 porin compare
AO353_16805 -2.1 -6.5 recombinase RecA compare
AO353_13100 -2.0 -2.6 GTPase RsgA compare
AO353_08880 -1.9 -2.8 exopolyphosphatase compare
AO353_03360 -1.8 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_11165 -1.8 -9.5 hypothetical protein compare
AO353_20170 -1.7 -5.3 trigger factor compare
AO353_02250 -1.7 -3.2 chorismate synthase compare
AO353_07645 -1.7 -1.2 sarcosine oxidase subunit gamma compare
AO353_11770 -1.7 -2.2 molecular chaperone Hsp33 compare
AO353_04365 -1.7 -5.5 recombinase XerD compare
AO353_09320 -1.6 -8.7 ATP-dependent DNA helicase RecG compare
AO353_08165 -1.6 -3.1 pyrroline-5-carboxylate reductase compare
AO353_06045 -1.6 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_05625 -1.5 -1.9 transcription elongation factor GreA compare
AO353_04520 -1.5 -5.1 elongation factor 4 compare
AO353_24425 -1.5 -2.4 amino acid ABC transporter permease compare
AO353_06040 -1.5 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_13225 -1.5 -3.0 50S ribosomal protein L9 compare
AO353_04355 -1.4 -2.0 homoserine dehydrogenase compare
AO353_16940 -1.4 -5.3 deoxycytidine triphosphate deaminase compare
AO353_16530 -1.4 -2.2 ribonuclease HII compare
AO353_14220 -1.4 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_11730 -1.4 -7.6 glutamate--cysteine ligase compare
AO353_25640 -1.4 -3.0 AsnC family transcriptional regulator compare
AO353_04565 -1.4 -5.2 nucleoid-associated protein compare
AO353_09050 -1.4 -3.6 recombinase XerC compare
AO353_10945 -1.4 -2.7 cytochrome C compare
AO353_27950 -1.3 -2.7 hypothetical protein compare
AO353_09240 -1.3 -2.7 acetylglutamate kinase compare
AO353_06495 -1.3 -4.0 gamma-glutamyl phosphate reductase compare
AO353_03590 -1.3 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_10055 -1.3 -8.8 DNA helicase II compare
AO353_08110 -1.3 -5.0 glutathione synthetase compare
AO353_13925 -1.3 -2.8 XRE family transcriptional regulator compare
AO353_00515 -1.3 -3.3 hypothetical protein compare
AO353_24595 -1.3 -1.5 hypothetical protein compare
AO353_13200 -1.3 -8.0 exoribonuclease R compare
AO353_08005 -1.2 -4.3 thioesterase compare
AO353_10930 -1.2 -6.0 DNA polymerase I compare
AO353_12105 -1.2 -5.4 peptidase S41 compare
AO353_06415 -1.2 -3.9 hypothetical protein compare
AO353_21625 -1.2 -2.2 Fe/S biogenesis protein NfuA compare
AO353_13160 -1.2 -2.4 membrane protease HflC compare
AO353_09720 -1.2 -1.7 hypothetical protein compare
AO353_09890 -1.2 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_03795 -1.1 -3.5 fumarate hydratase compare
AO353_13685 -1.1 -3.8 3-dehydroquinate dehydratase compare
AO353_02710 -1.1 -6.8 (p)ppGpp synthetase compare
AO353_23910 -1.1 -2.3 response regulator compare
AO353_18715 -1.1 -1.1 histidine kinase compare
AO353_19310 -1.1 -2.2 enoyl-CoA hydratase compare
AO353_05420 -1.0 -1.6 peptide chain release factor 3 compare
AO353_22735 -1.0 -2.7 hypothetical protein compare
AO353_08600 -1.0 -2.6 TetR family transcriptional regulator compare
AO353_03670 -1.0 -3.5 ornithine acetyltransferase compare
AO353_24535 -1.0 -2.1 hypothetical protein compare
AO353_06050 -1.0 -4.4 exodeoxyribonuclease V subunit gamma compare
AO353_06850 -1.0 -3.3 MFS transporter compare
AO353_09900 -1.0 -6.5 phosphate ABC transporter permease compare
AO353_14485 -1.0 -1.4 pseudouridine synthase compare
AO353_07905 -1.0 -3.2 hypothetical protein compare
AO353_18555 -1.0 -7.1 aromatic amino acid transporter compare
AO353_00660 -0.9 -2.2 transcriptional regulator compare
AO353_25450 -0.9 -1.7 cyanate hydratase compare
AO353_03580 -0.9 -2.5 ATP-dependent DNA helicase RuvB compare
AO353_03710 -0.9 -1.8 formyltetrahydrofolate deformylase compare
AO353_27720 -0.9 -3.0 cupin compare
AO353_09045 -0.9 -1.9 hypothetical protein compare
AO353_27130 -0.9 -1.8 hypothetical protein compare
AO353_11780 -0.9 -2.6 hypothetical protein compare
AO353_14945 -0.9 -2.6 hypothetical protein compare
AO353_27410 -0.9 -2.0 hypothetical protein compare
AO353_21640 -0.9 -2.1 cobalt transporter compare
AO353_14115 -0.9 -4.4 gamma-glutamyl kinase compare
AO353_14370 -0.9 -4.2 glucose-6-phosphate isomerase compare
AO353_27695 -0.9 -4.5 isocitrate dehydrogenase compare
AO353_14495 -0.9 -5.6 acetolactate synthase 3 catalytic subunit compare
AO353_22280 -0.9 -1.4 hypothetical protein compare
AO353_21935 -0.9 -1.9 nitrite reductase compare
AO353_14775 -0.9 -4.1 hypothetical protein compare
AO353_15830 -0.9 -2.5 transcriptional regulator compare
AO353_22955 -0.9 -2.2 tRNA hydroxylase compare
AO353_00620 -0.9 -1.9 cytochrome C oxidase Cbb3 compare
AO353_17320 -0.9 -6.1 NADH:flavin oxidoreductase conserved
AO353_14740 -0.9 -2.2 GTP-binding protein compare
AO353_10430 -0.9 -2.2 chromosome partitioning protein ParB compare
AO353_00650 -0.9 -1.7 cytochrome biogenesis protein compare
AO353_05550 -0.9 -3.9 pseudouridine synthase compare
AO353_10500 -0.8 -2.8 acetylornithine aminotransferase compare
AO353_14395 -0.8 -2.9 poly(A) polymerase compare
AO353_03585 -0.8 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_20185 -0.8 -3.6 DNA-binding protein compare
AO353_20585 -0.8 -1.6 TetR family transcriptional regulator compare
AO353_08115 -0.8 -3.6 energy transducer TonB compare
AO353_07315 -0.8 -1.8 rRNA methyltransferase compare
AO353_15555 -0.8 -2.9 fumarylacetoacetase compare
AO353_07155 -0.8 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09060 -0.8 -1.8 hypothetical protein compare
AO353_18780 -0.8 -3.7 cobyrinic acid a,c-diamide synthase compare
AO353_07850 -0.8 -2.8 ATP-dependent RNA helicase compare
AO353_09905 -0.8 -4.9 phosphate-binding protein compare
AO353_11340 -0.8 -1.0 MarR family transcriptional regulator compare
AO353_21430 -0.8 -1.9 hypothetical protein compare
AO353_03330 -0.8 -2.8 aldehyde dehydrogenase compare
AO353_13050 -0.8 -2.5 DNA topoisomerase IV compare
AO353_05690 -0.8 -2.1 SsrA-binding protein compare
AO353_15875 -0.8 -2.8 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_02075 -0.8 -4.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_19605 -0.8 -1.7 hypothetical protein compare
AO353_21830 -0.8 -5.8 chemotaxis protein CheY compare
AO353_16440 -0.7 -1.8 ArsC family transcriptional regulator compare
AO353_09000 -0.7 -3.0 argininosuccinate lyase compare
AO353_19145 -0.7 -2.7 protease HtpX compare
AO353_26525 -0.7 -1.3 hypothetical protein compare
AO353_04175 -0.7 -2.8 glycerol uptake facilitator GlpF compare
AO353_03290 -0.7 -1.3 peptide deformylase compare
AO353_06865 -0.7 -5.8 catalase compare
AO353_08980 -0.7 -1.8 heme biosynthesis operon protein HemX compare
AO353_00760 -0.7 -1.6 hypothetical protein compare
AO353_22870 -0.7 -1.6 oxidoreductase compare
AO353_15460 -0.7 -3.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_22180 -0.7 -3.1 2-oxobutyrate oxidase compare
AO353_00975 -0.7 -2.4 hypothetical protein compare
AO353_10440 -0.7 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_19685 -0.7 -2.3 alkylhydroperoxidase compare
AO353_28295 -0.7 -1.7 GNAT family acetyltransferase compare
AO353_05130 -0.7 -0.9 anti-anti-sigma factor compare
AO353_23590 -0.7 -1.1 ArsR family transcriptional regulator compare
AO353_18765 -0.7 -2.2 hypothetical protein compare
AO353_08685 -0.7 -3.7 N-acetylglutamate synthase compare
AO353_12540 -0.7 -1.9 hypothetical protein compare
AO353_03100 -0.7 -1.4 XRE family transcriptional regulator compare
AO353_27710 -0.7 -0.9 DNA repair protein compare
AO353_14500 -0.7 -3.1 acetolactate synthase 3 regulatory subunit compare
AO353_01795 -0.7 -1.5 hypothetical protein compare
AO353_09745 -0.6 -1.0 hypothetical protein compare
AO353_19090 -0.6 -1.2 MarR family transcriptional regulator compare
AO353_18305 -0.6 -1.9 RNA helicase compare
AO353_14420 -0.6 -2.1 molecular chaperone DnaK compare
AO353_17520 -0.6 -1.8 hypothetical protein compare
AO353_06585 -0.6 -3.3 hypothetical protein compare
AO353_11850 -0.6 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_24790 -0.6 -2.6 Cro/Cl family transcriptional regulator compare
AO353_22855 -0.6 -1.6 hypothetical protein compare
AO353_26835 -0.6 -1.9 transcriptional regulator compare
AO353_07910 -0.6 -1.4 hypothetical protein compare
AO353_10950 -0.6 -4.3 thiol:disulfide interchange protein compare
AO353_16810 -0.6 -2.0 recombinase RecX compare
AO353_28160 -0.6 -2.4 amidohydrolase compare
AO353_01690 -0.6 -3.1 hypothetical protein compare
AO353_21355 -0.6 -1.3 xylose isomerase compare
AO353_21530 -0.6 -2.2 type VI secretion protein compare
AO353_18925 -0.6 -1.3 ATPase compare
AO353_15000 -0.6 -1.9 glycerate dehydrogenase compare
AO353_19750 -0.6 -1.3 diaminopimelate epimerase compare
AO353_24395 -0.6 -2.6 alkylhydroperoxidase compare
AO353_01485 -0.6 -3.1 ABC transporter compare
AO353_13140 -0.6 -2.7 tRNA dimethylallyltransferase compare
AO353_27500 -0.6 -1.2 hypothetical protein compare
AO353_10435 -0.6 -4.0 chromosome partitioning protein compare
AO353_16585 -0.6 -4.0 S-formylglutathione hydrolase conserved
AO353_17290 -0.6 -2.6 multidrug transporter compare
AO353_20175 -0.6 -1.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_24415 -0.6 -1.2 glutamine ABC transporter ATP-binding protein compare
AO353_01270 -0.6 -1.9 2-dehydro-3-deoxygalactonokinase compare
AO353_09275 -0.6 -1.8 DNA-directed RNA polymerase subunit omega compare
AO353_09895 -0.6 -3.5 phosphate ABC transporter permease compare
AO353_12020 -0.6 -1.6 hypothetical protein compare
AO353_05060 -0.6 -2.2 pressure-regulated protein compare
AO353_22360 -0.6 -1.7 ABC transporter ATP-binding protein compare
AO353_20495 -0.6 -1.4 NUDIX hydrolase compare
AO353_12460 -0.6 -3.1 malate dehydrogenase compare
AO353_27525 -0.6 -1.7 AraC family transcriptional regulator compare
AO353_17175 -0.6 -1.5 beta-ketoadipyl CoA thiolase compare
AO353_24340 -0.6 -1.0 TetR family transcriptional regulator compare
AO353_16385 -0.6 -2.2 hypothetical protein compare
AO353_11920 -0.6 -1.6 hypothetical protein compare
AO353_25305 -0.6 -2.1 malonate transporter compare
AO353_00495 -0.6 -1.1 DNA topoisomerase I compare
AO353_09815 -0.6 -2.7 hypothetical protein compare
AO353_22680 -0.6 -3.0 aldehyde dehydrogenase compare
AO353_01410 -0.6 -1.5 ribonuclease E compare
AO353_04090 -0.5 -1.3 leucyl-tRNA synthetase compare
AO353_17635 -0.5 -3.3 RNA polymerase subunit sigma compare
AO353_05620 -0.5 -2.2 MFS transporter compare
AO353_15185 -0.5 -2.3 ATPase compare
AO353_02885 -0.5 -1.1 flagellar biosynthesis protein FlgN compare
AO353_27925 -0.5 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress Furfuryl Alcohol across organisms