Experiment set4IT056 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with D-Cycloserine 0.1 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2105 -2.7 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_58 -2.4 -6.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3906 -2.4 -4.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2209 -2.3 -8.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1057 -2.3 -3.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3011 -2.2 -2.5 Tyrosine recombinase XerD compare
Pf1N1B4_769 -2.2 -6.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_327 -2.2 -1.9 hypothetical protein compare
Pf1N1B4_2721 -2.1 -8.8 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_267 -2.0 -2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_1504 -2.0 -2.5 Acyl carrier protein compare
Pf1N1B4_1234 -1.9 -4.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1116 -1.9 -10.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4627 -1.9 -3.2 FIG00957600: hypothetical protein compare
Pf1N1B4_1317 -1.9 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_4051 -1.9 -4.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_3687 -1.9 -3.2 FIG00953885: hypothetical protein compare
Pf1N1B4_1307 -1.8 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4028 -1.7 -3.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3833 -1.7 -6.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4960 -1.7 -2.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4040 -1.7 -2.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_644 -1.7 -1.5 Cold shock protein CspC compare
Pf1N1B4_1619 -1.7 -7.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1115 -1.7 -8.3 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4039 -1.7 -5.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4509 -1.7 -1.4 Aldose 1-epimerase compare
Pf1N1B4_5906 -1.6 -3.4 Esterase/lipase compare
Pf1N1B4_4103 -1.6 -2.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_2917 -1.6 -6.7 FIG140336: TPR domain protein compare
Pf1N1B4_3143 -1.6 -2.6 RecA protein compare
Pf1N1B4_4436 -1.6 -3.5 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_1749 -1.6 -1.7 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4972 -1.6 -2.0 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1126 -1.6 -2.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_4486 -1.5 -3.0 Outer membrane protein (porin) compare
Pf1N1B4_5224 -1.5 -2.4 tRNA-Arg-CCT compare
Pf1N1B4_2114 -1.5 -5.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4824 -1.5 -2.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_2283 -1.4 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_403 -1.4 -1.9 FIG00965925: hypothetical protein compare
Pf1N1B4_1870 -1.4 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2386 -1.4 -3.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_3331 -1.4 -2.9 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5659 -1.4 -8.9 NfuA Fe-S protein maturation compare
Pf1N1B4_619 -1.4 -2.3 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_2401 -1.4 -1.8 Lipoprotein, putative compare
Pf1N1B4_1328 -1.4 -2.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3889 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_3965 -1.4 -2.3 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_2339 -1.4 -2.4 COG1872 compare
Pf1N1B4_3498 -1.4 -2.3 FIG00953240: hypothetical protein compare
Pf1N1B4_5074 -1.4 -1.6 Gluconate permease compare
Pf1N1B4_5010 -1.3 -5.0 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_2874 -1.3 -2.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_350 -1.3 -5.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2674 -1.3 -1.6 hypothetical protein compare
Pf1N1B4_4980 -1.3 -2.1 putative lipoprotein compare
Pf1N1B4_1683 -1.3 -1.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_3785 -1.3 -1.7 FOG: Ankyrin repeat compare
Pf1N1B4_2885 -1.3 -4.5 Paraquat-inducible protein A compare
Pf1N1B4_3468 -1.3 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2526 -1.3 -9.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1568 -1.3 -3.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_1 -1.3 -2.0 Colicin V production protein compare
Pf1N1B4_2048 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_4038 -1.2 -2.1 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1837 -1.2 -1.9 Osmotically inducible protein C compare
Pf1N1B4_866 -1.2 -1.6 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3328 -1.2 -1.9 Rhodanese-like domain protein compare
Pf1N1B4_231 -1.2 -3.7 Sensor histidine kinase compare
Pf1N1B4_3559 -1.2 -7.8 Aromatic amino acid transport protein AroP compare
Pf1N1B4_1668 -1.2 -3.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2106 -1.2 -1.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_5899 -1.2 -1.9 FIG00954746: hypothetical protein compare
Pf1N1B4_2568 -1.1 -2.3 Translation elongation factor Tu compare
Pf1N1B4_3544 -1.1 -3.2 Nitroreductase family protein compare
Pf1N1B4_4212 -1.1 -2.1 Gfa-like protein compare
Pf1N1B4_5259 -1.1 -3.3 hypothetical protein compare
Pf1N1B4_4849 -1.1 -1.7 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_3078 -1.1 -2.0 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_2047 -1.1 -3.1 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_4931 -1.1 -2.0 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_35 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_629 -1.1 -2.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_3665 -1.1 -2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_4585 -1.1 -2.5 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4481 -1.1 -2.0 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_5560 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_3437 -1.1 -3.7 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf1N1B4_1975 -1.1 -1.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_3812 -1.1 -5.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1236 -1.1 -4.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_6037 -1.1 -2.1 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_739 -1.1 -2.6 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_5267 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_981 -1.1 -2.4 UPF0246 protein YaaA compare
Pf1N1B4_5393 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_1906 -1.1 -2.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3445 -1.1 -2.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1540 -1.1 -2.1 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_733 -1.0 -1.7 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5760 -1.0 -2.3 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_1872 -1.0 -4.8 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_3446 -1.0 -1.5 Putative GTPases (G3E family) compare
Pf1N1B4_4661 -1.0 -2.2 Cell division inhibitor SULA compare
Pf1N1B4_3432 -1.0 -4.9 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
Pf1N1B4_2400 -1.0 -1.7 FIG00955006: hypothetical protein compare
Pf1N1B4_5289 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2005 -1.0 -1.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2360 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_2485 -1.0 -1.9 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_4156 -1.0 -2.0 putative secreted protein compare
Pf1N1B4_855 -1.0 -2.1 FIG021952: putative membrane protein compare
Pf1N1B4_2612 -1.0 -2.6 Putative transport protein compare
Pf1N1B4_4208 -1.0 -1.7 organophosphate pesticide hydrolase compare
Pf1N1B4_5724 -1.0 -2.0 High-affinity iron permease compare
Pf1N1B4_2223 -1.0 -3.4 FIG006231: RNA-binding protein compare
Pf1N1B4_814 -0.9 -1.8 Transcriptional regulator, PadR family compare
Pf1N1B4_2021 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_683 -0.9 -2.8 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_708 -0.9 -3.0 Chromosome initiation inhibitor compare
Pf1N1B4_5464 -0.9 -2.2 Cointegrate resolution protein T compare
Pf1N1B4_1971 -0.9 -2.4 SAM-dependent methyltransferases compare
Pf1N1B4_3443 -0.9 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3751 -0.9 -1.4 FIG00953060: hypothetical protein compare
Pf1N1B4_813 -0.9 -4.1 hypothetical protein compare
Pf1N1B4_1637 -0.9 -1.2 FIG00954739: hypothetical protein compare
Pf1N1B4_4446 -0.9 -1.7 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2939 -0.9 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_348 -0.9 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_373 -0.9 -2.1 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_1570 -0.9 -2.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5720 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4234 -0.9 -2.8 putative transport protein compare
Pf1N1B4_1052 -0.9 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2527 -0.9 -5.5 ApaG protein compare
Pf1N1B4_2886 -0.9 -5.7 Paraquat-inducible protein B compare
Pf1N1B4_2609 -0.9 -6.2 Catalase (EC 1.11.1.6) compare
Pf1N1B4_438 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_2372 -0.9 -2.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5023 -0.9 -2.6 Alkylated DNA repair protein AlkB compare
Pf1N1B4_3911 -0.9 -2.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_255 -0.9 -2.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_4699 -0.9 -1.4 Multidrug translocase MdfA compare
Pf1N1B4_776 -0.9 -2.0 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_901 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_1691 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_1069 -0.9 -3.4 YrbA protein compare
Pf1N1B4_4763 -0.9 -1.8 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_4533 -0.9 -1.8 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5311 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4437 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_4029 -0.8 -1.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3703 -0.8 -1.8 NLP/P60 family protein compare
Pf1N1B4_5711 -0.8 -1.6 Salicylate hydroxylase (EC 1.14.13.1) compare
Pf1N1B4_1667 -0.8 -1.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_3595 -0.8 -1.5 Flagellin protein FlaG compare
Pf1N1B4_5897 -0.8 -2.5 FIG00963512: hypothetical protein compare
Pf1N1B4_4969 -0.8 -1.2 FIG00956189: hypothetical protein compare
Pf1N1B4_1375 -0.8 -5.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_1403 -0.8 -3.8 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_627 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2718 -0.8 -3.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_1191 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_2944 -0.8 -3.0 FIG00955938: hypothetical protein compare
Pf1N1B4_2331 -0.8 -2.9 Thiazole biosynthesis protein ThiG compare
Pf1N1B4_2853 -0.8 -1.3 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_867 -0.8 -2.0 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_3520 -0.8 -1.9 Phosphohistidine phosphatase SixA compare
Pf1N1B4_4462 -0.8 -1.5 LysR family transcriptional regulator YbhD compare
Pf1N1B4_756 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_401 -0.8 -2.4 GCN5-related N-acetyltransferase (EC 2.3.1.57) compare
Pf1N1B4_3997 -0.8 -2.5 Uncharacterized protein YtfM precursor compare
Pf1N1B4_4140 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5701 -0.8 -2.1 FIG00955602: hypothetical protein compare
Pf1N1B4_5443 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_5552 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_2795 -0.8 -2.4 Alkylphosphonate utilization operon protein PhnA compare
Pf1N1B4_2210 -0.8 -1.3 Glutamate transport ATP-binding protein compare
Pf1N1B4_4532 -0.8 -1.4 ClpB protein compare
Pf1N1B4_1770 -0.8 -2.1 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Pf1N1B4_5574 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_2196 -0.8 -2.3 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4725 -0.8 -1.8 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_4857 -0.8 -3.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_339 -0.8 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2271 -0.8 -2.6 ATPases of the AAA+ class compare
Pf1N1B4_6032 -0.8 -1.9 Ribose operon repressor compare
Pf1N1B4_5815 -0.8 -1.7 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_5077 -0.8 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_5322 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_3356 -0.8 -1.3 Cyclic nucleotide-binding protein compare
Pf1N1B4_909 -0.8 -1.8 Ketosteroid isomerase-related protein compare
Pf1N1B4_1579 -0.8 -2.2 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_4621 -0.8 -2.2 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_74 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4030 -0.8 -1.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4999 -0.8 -2.1 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_2560 -0.8 -3.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress D-Cycloserine in Pseudomonas fluorescens FW300-N1B4

For stress D-Cycloserine across organisms