Experiment set4IT056 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 1

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -4.2 -2.9 Phosphoserine phosphatase compare
Xcc-8004.1727.1 -3.7 -5.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1336.1 -3.5 -8.7 two-component system sensor protein compare
Xcc-8004.4824.1 -3.3 -13.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.884.1 -3.2 -7.0 Rod shape-determining protein MreD compare
Xcc-8004.4286.1 -2.9 -8.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.271.1 -2.7 -4.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1241.1 -2.7 -5.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1236.1 -2.6 -6.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.5193.1 -2.6 -16.5 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.1763.1 -2.6 -3.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.5192.1 -2.4 -11.0 hypothetical protein compare
Xcc-8004.1282.1 -2.3 -5.5 sulfur deprivation response regulator compare
Xcc-8004.4737.1 -2.2 -5.2 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.3726.1 -2.1 -2.7 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3346.1 -2.0 -3.0 hypothetical protein compare
Xcc-8004.3433.1 -2.0 -7.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.950.1 -1.9 -2.5 General secretion pathway protein L compare
Xcc-8004.4732.1 -1.9 -1.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.907.1 -1.8 -11.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.4510.1 -1.8 -1.5 ATP binding component of ABC-transporter compare
Xcc-8004.1871.1 -1.8 -3.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4620.1 -1.8 -8.0 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3395.1 -1.8 -3.6 Transcriptional regulator, GntR family compare
Xcc-8004.4457.1 -1.8 -5.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4616.1 -1.7 -7.6 Sensor histidine kinase compare
Xcc-8004.4112.1 -1.7 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2217.1 -1.7 -3.7 FIG01209779: hypothetical protein compare
Xcc-8004.495.1 -1.6 -5.5 EpiH/GdmH-related protein compare
Xcc-8004.4026.1 -1.6 -6.0 FIG01209666: hypothetical protein compare
Xcc-8004.4102.1 -1.6 -2.1 FIG01211949: hypothetical protein compare
Xcc-8004.2921.1 -1.6 -2.8 ferrous iron transport protein compare
Xcc-8004.589.1 -1.5 -2.7 hypothetical protein compare
Xcc-8004.1359.1 -1.5 -5.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4596.1 -1.5 -6.5 hypothetical protein compare
Xcc-8004.5133.1 -1.5 -1.5 FIG01212313: hypothetical protein compare
Xcc-8004.3722.1 -1.5 -1.6 HrpB7 protein compare
Xcc-8004.3054.1 -1.4 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2386.1 -1.4 -9.4 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.5205.1 -1.4 -3.3 FIG01210461: hypothetical protein compare
Xcc-8004.4738.1 -1.4 -7.6 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.456.1 -1.4 -1.5 carbonic anhydrase, family 3 compare
Xcc-8004.574.1 -1.4 -5.7 Di-/tripeptide transporter compare
Xcc-8004.968.1 -1.4 -7.6 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2920.1 -1.3 -6.3 Ferrous iron transport protein B compare
Xcc-8004.2385.1 -1.3 -7.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.4951.1 -1.3 -2.5 FIG01210986: hypothetical protein compare
Xcc-8004.3310.1 -1.3 -3.9 Chromosome partition protein smc compare
Xcc-8004.1007.1 -1.2 -1.8 acetylxylan esterase compare
Xcc-8004.718.1 -1.2 -1.4 hypothetical protein compare
Xcc-8004.4025.1 -1.2 -7.4 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4752.1 -1.2 -1.8 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4384.1 -1.2 -2.5 hypothetical protein compare
Xcc-8004.5367.1 -1.2 -4.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4441.1 -1.1 -3.0 Tyrosine recombinase XerD compare
Xcc-8004.5352.1 -1.1 -2.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4181.1 -1.1 -1.4 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.1491.1 -1.1 -7.9 Glycosyltransferase compare
Xcc-8004.4473.1 -1.1 -8.1 FIG01212400: hypothetical protein compare
Xcc-8004.4514.1 -1.1 -7.5 Glycosyltransferase compare
Xcc-8004.2335.1 -1.1 -3.8 Transport ATP-binding protein CydC compare
Xcc-8004.1205.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.4485.1 -1.0 -5.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.4948.1 -1.0 -1.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4486.1 -1.0 -7.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4833.1 -1.0 -1.7 FIG01111678: hypothetical protein compare
Xcc-8004.1511.1 -1.0 -2.3 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1162.1 -1.0 -2.3 FIG01210644: hypothetical protein compare
Xcc-8004.2079.1 -1.0 -2.6 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3855.1 -1.0 -5.1 FIG01209965: hypothetical protein compare
Xcc-8004.3208.1 -1.0 -1.6 Methyltransferase type 12 compare
Xcc-8004.2406.1 -1.0 -6.1 Manganese transport protein MntH compare
Xcc-8004.1118.1 -1.0 -1.5 hypothetical protein compare
Xcc-8004.914.1 -1.0 -4.5 tail-specific protease compare
Xcc-8004.130.1 -1.0 -4.2 hypothetical protein compare
Xcc-8004.2389.1 -1.0 -1.6 protein of unknown function DUF1244 compare
Xcc-8004.4481.1 -0.9 -3.6 hypothetical protein compare
Xcc-8004.4465.1 -0.9 -3.2 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.2561.1 -0.9 -5.0 FIG01213638: hypothetical protein compare
Xcc-8004.2334.1 -0.9 -4.1 Transport ATP-binding protein CydD compare
Xcc-8004.932.1 -0.9 -4.1 histidine kinase/response regulator hybrid protein compare
Xcc-8004.270.1 -0.9 -3.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4225.1 -0.9 -1.5 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.4635.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.2168.1 -0.9 -2.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.1204.1 -0.9 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.4298.1 -0.9 -3.1 Hemin uptake protein compare
Xcc-8004.4428.1 -0.9 -1.2 General secretion pathway protein I compare
Xcc-8004.4775.1 -0.9 -4.5 Cell division protein FtsX compare
Xcc-8004.5365.1 -0.9 -4.0 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.3721.1 -0.9 -1.5 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3834.1 -0.9 -2.5 Pathogenicity-related protein compare
Xcc-8004.4976.1 -0.9 -5.6 hypothetical protein compare
Xcc-8004.585.1 -0.8 -1.5 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1568.1 -0.8 -1.8 Glycine cleavage system H protein compare
Xcc-8004.2332.1 -0.8 -3.7 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.2579.1 -0.8 -2.0 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.1362.1 -0.8 -2.2 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.4957.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.4210.1 -0.8 -3.2 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4092.1 -0.8 -4.7 FIG01209901: hypothetical protein compare
Xcc-8004.559.1 -0.8 -1.7 FIG01213048: hypothetical protein compare
Xcc-8004.236.1 -0.8 -1.6 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.4739.1 -0.8 -2.4 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.5166.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.3775.1 -0.8 -2.5 FIG001154: CcsA-related protein compare
Xcc-8004.481.1 -0.8 -3.0 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Xcc-8004.3740.1 -0.8 -2.3 Type III secretion HpaB protein compare
Xcc-8004.4665.1 -0.8 -1.9 FIG01211765: hypothetical protein compare
Xcc-8004.1890.1 -0.8 -2.9 hypothetical protein compare
Xcc-8004.4877.1 -0.8 -6.9 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.1164.1 -0.8 -1.4 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2734.1 -0.8 -3.0 Mlr7403 protein compare
Xcc-8004.4105.1 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4517.1 -0.8 -4.7 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.3532.1 -0.8 -1.8 Bacterioferritin compare
Xcc-8004.4464.1 -0.8 -3.9 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.3230.1 -0.8 -1.7 Phage DNA invertase compare
Xcc-8004.29.1 -0.8 -3.1 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.2343.1 -0.8 -1.2 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.2924.1 -0.8 -3.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4368.1 -0.8 -0.9 FIG01209977: hypothetical protein compare
Xcc-8004.645.1 -0.8 -1.1 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4204.1 -0.8 -1.2 FIG01210014: hypothetical protein compare
Xcc-8004.930.1 -0.8 -4.4 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.4275.1 -0.8 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4508.1 -0.8 -3.7 Kinase compare
Xcc-8004.4467.1 -0.7 -3.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.3848.1 -0.7 -2.3 FIG01212003: hypothetical protein compare
Xcc-8004.5366.1 -0.7 -5.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.694.1 -0.7 -2.3 hypothetical protein compare
Xcc-8004.3498.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.3049.1 -0.7 -4.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2346.1 -0.7 -1.2 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4759.1 -0.7 -5.7 protease IV compare
Xcc-8004.234.1 -0.7 -4.5 cardiolipin synthase compare
Xcc-8004.143.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.4923.1 -0.7 -1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.2131.1 -0.7 -2.0 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.3863.1 -0.7 -1.9 Septum site-determining protein MinD compare
Xcc-8004.1845.1 -0.7 -2.8 Mobile element protein compare
Xcc-8004.2081.1 -0.7 -2.0 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3861.1 -0.7 -3.1 FIG01210504: hypothetical protein compare
Xcc-8004.3536.1 -0.7 -2.2 FIG01210913: hypothetical protein compare
Xcc-8004.637.1 -0.7 -2.8 Bacterioferritin-associated ferredoxin compare
Xcc-8004.740.1 -0.7 -2.1 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.1959.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.2358.1 -0.7 -3.6 Segregation and condensation protein A compare
Xcc-8004.3979.1 -0.7 -3.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.5084.1 -0.7 -2.3 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Xcc-8004.1266.1 -0.7 -1.7 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.2428.1 -0.7 -2.5 Two-component system regulatory protein compare
Xcc-8004.1436.1 -0.7 -0.8 Holliday junction DNA helicase RuvA compare
Xcc-8004.3426.1 -0.7 -3.0 Chaperone protein DnaJ compare
Xcc-8004.3882.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.1279.1 -0.7 -1.9 FIG01210269: hypothetical protein compare
Xcc-8004.1581.1 -0.7 -5.8 hypothetical protein compare
Xcc-8004.1619.1 -0.6 -1.7 PspA/IM30 family protein compare
Xcc-8004.3669.1 -0.6 -2.6 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) compare
Xcc-8004.2215.1 -0.6 -0.9 hypothetical protein compare
Xcc-8004.736.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.1124.1 -0.6 -1.2 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.3103.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.2356.1 -0.6 -2.1 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3374.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.4039.1 -0.6 -1.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2646.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.1660.1 -0.6 -0.8 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.2497.1 -0.6 -0.8 Mobile element protein compare
Xcc-8004.773.1 -0.6 -1.9 Transcriptional regulator marR family compare
Xcc-8004.765.1 -0.6 -2.6 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.4313.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.4796.1 -0.6 -1.6 PhnB protein compare
Xcc-8004.3816.1 -0.6 -3.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3953.1 -0.6 -1.8 Putative inner membrane protein YjeT (clustered with HflC) compare
Xcc-8004.1790.1 -0.6 -1.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.2160.1 -0.6 -2.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Xcc-8004.4507.1 -0.6 -2.1 Glycosyltransferase compare
Xcc-8004.1832.1 -0.6 -1.6 FIG01210449: hypothetical protein compare
Xcc-8004.3394.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.3598.1 -0.6 -2.7 Ferredoxin II compare
Xcc-8004.2831.1 -0.6 -3.1 Flagellar synthesis regulator FleN compare
Xcc-8004.5073.1 -0.6 -1.5 FIG01210860: hypothetical protein compare
Xcc-8004.4302.1 -0.6 -2.7 Ribokinase (EC 2.7.1.15) compare
Xcc-8004.5369.1 -0.6 -2.4 Lipoprotein compare
Xcc-8004.5051.1 -0.6 -1.1 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.3982.1 -0.6 -2.6 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.4904.1 -0.6 -3.7 O-antigen acetylase compare
Xcc-8004.4735.1 -0.6 -2.4 FIG01210211: hypothetical protein compare
Xcc-8004.4797.1 -0.6 -2.1 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Xcc-8004.2333.1 -0.6 -3.2 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1616.1 -0.6 -0.9 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1891.1 -0.6 -1.0 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.4000.1 -0.6 -1.4 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.951.1 -0.6 -1.0 General secretion pathway protein M compare
Xcc-8004.2910.1 -0.6 -2.4 Regulatory protein, RpfE type compare
Xcc-8004.4046.1 -0.6 -3.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.5186.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.2922.1 -0.6 -1.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2956.1 -0.6 -1.6 Homoserine kinase (EC 2.7.1.39) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms