Experiment set4IT056 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 1

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.4283.1 +1.6 3.2 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.99.1 +1.5 2.4 FIG01211055: hypothetical protein compare
Xcc-8004.4329.1 +1.4 3.2 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.2861.1 +1.3 3.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4327.1 +1.3 1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1839.1 +1.3 2.6 FIG01210863: hypothetical protein compare
Xcc-8004.5203.1 +1.2 2.1 Twin-arginine translocation protein TatB compare
Xcc-8004.1414.1 +1.1 1.5 Lactoylglutathione lyase and related lyases compare
Xcc-8004.934.1 +1.1 1.5 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.5334.1 +1.0 2.9 hypothetical protein compare
Xcc-8004.3376.1 +1.0 3.1 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.3479.1 +1.0 2.3 aklaviketone reductase compare
Xcc-8004.1914.1 +1.0 1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2627.1 +1.0 2.5 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.618.1 +0.9 3.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3401.1 +0.9 2.2 FIG01209914: hypothetical protein compare
Xcc-8004.4322.1 +0.9 1.4 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4945.1 +0.9 1.4 FIG01210349: hypothetical protein compare
Xcc-8004.738.1 +0.9 1.9 Malonate decarboxylase gamma subunit compare
Xcc-8004.3321.1 +0.9 1.1 FIG01209847: hypothetical protein compare
Xcc-8004.4605.1 +0.9 1.9 FIG001943: hypothetical protein YajQ compare
Xcc-8004.837.1 +0.9 2.4 FIG01210690: hypothetical protein compare
Xcc-8004.770.1 +0.8 2.3 hypothetical protein compare
Xcc-8004.178.1 +0.8 1.3 hypothetical protein compare
Xcc-8004.3612.1 +0.8 1.5 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.3898.1 +0.8 1.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.375.1 +0.8 1.2 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.3451.1 +0.8 1.1 hypothetical protein compare
Xcc-8004.3018.1 +0.8 2.4 hypothetical protein compare
Xcc-8004.4698.1 +0.8 2.7 Methyl-accepting chemotaxis protein compare
Xcc-8004.288.1 +0.7 1.4 Ferredoxin compare
Xcc-8004.4921.1 +0.7 1.1 FIG01213962: hypothetical protein compare
Xcc-8004.2865.1 +0.7 1.6 FIG01210234: hypothetical protein compare
Xcc-8004.401.1 +0.7 1.8 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.4423.1 +0.7 1.8 General secretion pathway protein N compare
Xcc-8004.2569.1 +0.7 1.6 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.1961.1 +0.7 1.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.2282.1 +0.7 1.6 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.995.1 +0.7 1.8 rhamnogalacturonase B compare
Xcc-8004.4844.1 +0.7 1.1 FIG01210764: hypothetical protein compare
Xcc-8004.1858.1 +0.7 1.0 FIG01211170: hypothetical protein compare
Xcc-8004.3471.1 +0.7 1.3 FIG01211539: hypothetical protein compare
Xcc-8004.5021.1 +0.7 1.2 FIG01211474: hypothetical protein compare
Xcc-8004.1453.1 +0.6 2.3 hypothetical protein compare
Xcc-8004.1223.1 +0.6 1.5 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Xcc-8004.854.1 +0.6 1.8 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.3723.1 +0.6 1.6 hypothetical protein compare
Xcc-8004.1826.1 +0.6 1.4 FIG01217340: hypothetical protein compare
Xcc-8004.4529.1 +0.6 1.4 FIG01210979: hypothetical protein compare
Xcc-8004.4533.1 +0.6 2.2 TfoX C-terminal domain superfamily compare
Xcc-8004.4556.1 +0.6 1.2 Lipoprotein releasing system ATP-binding protein LolD compare
Xcc-8004.4675.1 +0.6 0.9 FIG01211280: hypothetical protein compare
Xcc-8004.4852.1 +0.6 1.8 hypothetical protein compare
Xcc-8004.3792.1 +0.6 1.2 Mobile element protein compare
Xcc-8004.3556.1 +0.6 2.1 FIG01213161: hypothetical protein compare
Xcc-8004.782.1 +0.6 2.0 hypothetical protein compare
Xcc-8004.1735.1 +0.6 2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2060.1 +0.6 1.8 Mobile element protein compare
Xcc-8004.3595.1 +0.6 1.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.3741.1 +0.6 2.4 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.4641.1 +0.6 2.4 Secreted and surface protein containing fasciclin-like repeats compare
Xcc-8004.1113.1 +0.6 1.6 hypothetical protein compare
Xcc-8004.340.1 +0.6 1.4 Organic hydroperoxide resistance protein compare
Xcc-8004.2638.1 +0.6 2.6 Zona occludens toxin compare
Xcc-8004.4402.1 +0.6 2.0 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.5038.1 +0.6 1.6 ABC-type Na+ transport system, ATPase component compare
Xcc-8004.360.1 +0.5 1.2 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.4691.1 +0.5 1.6 hypothetical protein compare
Xcc-8004.3514.1 +0.5 1.4 FIG01211598: hypothetical protein compare
Xcc-8004.5321.1 +0.5 2.3 FIG01213140: hypothetical protein compare
Xcc-8004.4553.1 +0.5 2.0 FIG01211682: hypothetical protein compare
Xcc-8004.2931.1 +0.5 2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.5167.1 +0.5 1.8 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.5161.1 +0.5 1.6 FIG01212148: hypothetical protein compare
Xcc-8004.3036.1 +0.5 1.7 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.990.1 +0.5 2.0 FIG01210796: hypothetical protein compare
Xcc-8004.1052.1 +0.5 2.1 hypothetical protein compare
Xcc-8004.1515.1 +0.5 1.5 hypothetical protein compare
Xcc-8004.2814.1 +0.5 3.1 Flagellar hook-length control protein FliK compare
Xcc-8004.4064.1 +0.5 3.5 Polyphosphate kinase (EC 2.7.4.1) compare
Xcc-8004.399.1 +0.5 1.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.4854.1 +0.5 2.3 FIG01213399: hypothetical protein compare
Xcc-8004.5297.1 +0.5 1.5 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.3759.1 +0.5 1.6 hypothetical protein compare
Xcc-8004.244.1 +0.5 1.7 FIG01209881: hypothetical protein compare
Xcc-8004.4693.1 +0.5 1.4 hypothetical protein compare
Xcc-8004.1433.1 +0.5 1.4 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.3196.1 +0.5 2.5 response regulator compare
Xcc-8004.1514.1 +0.5 1.6 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.2475.1 +0.5 1.2 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Xcc-8004.2761.1 +0.5 1.3 FIG01212073: hypothetical protein compare
Xcc-8004.955.1 +0.5 1.8 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.2422.1 +0.5 1.2 Putative stress-responsive transcriptional regulator compare
Xcc-8004.183.1 +0.5 2.1 FIG01211553: hypothetical protein compare
Xcc-8004.2785.1 +0.5 2.0 Flagellar L-ring protein FlgH compare
Xcc-8004.2055.1 +0.5 0.6 Mobile element protein compare
Xcc-8004.177.1 +0.5 1.9 RhsD protein compare
Xcc-8004.3409.1 +0.5 1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1819.1 +0.5 3.0 putative Cytochrome bd2, subunit I compare
Xcc-8004.706.1 +0.5 1.7 Propionyl-CoA:succinyl-CoA transferase compare
Xcc-8004.5302.1 +0.5 1.8 FIG039767: hypothetical protein compare
Xcc-8004.981.1 +0.5 1.5 FrmR: Negative transcriptional regulator of formaldehyde detoxification operon compare
Xcc-8004.2612.1 +0.5 2.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Xcc-8004.1896.1 +0.5 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4430.1 +0.5 0.9 General secretion pathway protein G compare
Xcc-8004.1133.1 +0.5 0.7 Rubredoxin compare
Xcc-8004.1247.1 +0.5 1.7 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.1838.1 +0.5 0.7 FIG002958: hypothetical protein compare
Xcc-8004.4633.1 +0.4 1.1 FIG01210488: hypothetical protein compare
Xcc-8004.3832.1 +0.4 1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.997.1 +0.4 1.4 Possible GRAM domain compare
Xcc-8004.429.1 +0.4 0.9 hypothetical protein compare
Xcc-8004.4661.1 +0.4 1.3 Protein YciE compare
Xcc-8004.2900.1 +0.4 1.9 response regulator compare
Xcc-8004.2701.1 +0.4 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5189.1 +0.4 1.0 FIG01212821: hypothetical protein compare
Xcc-8004.651.1 +0.4 1.6 Transmembrane protein compare
Xcc-8004.4963.1 +0.4 2.0 Acriflavin resistance protein compare
Xcc-8004.4937.1 +0.4 1.5 FIG01211718: hypothetical protein compare
Xcc-8004.1246.1 +0.4 2.0 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.5265.1 +0.4 1.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3523.1 +0.4 1.6 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit compare
Xcc-8004.2417.1 +0.4 2.1 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) compare
Xcc-8004.1769.1 +0.4 1.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Xcc-8004.1518.1 +0.4 1.5 FIG01212366: hypothetical protein compare
Xcc-8004.5324.1 +0.4 1.3 Mobile element protein compare
Xcc-8004.1466.1 +0.4 1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.852.1 +0.4 1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.366.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.5122.1 +0.4 1.2 hypothetical protein compare
Xcc-8004.2871.1 +0.4 1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3666.1 +0.4 1.5 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain compare
Xcc-8004.2495.1 +0.4 0.9 hypothetical protein compare
Xcc-8004.788.1 +0.4 1.2 Serine peptidase compare
Xcc-8004.2574.1 +0.4 0.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.2895.1 +0.4 1.8 FIG01210907: hypothetical protein compare
Xcc-8004.1326.1 +0.4 1.7 hypothetical protein compare
Xcc-8004.726.1 +0.4 0.6 Putative preQ0 transporter compare
Xcc-8004.197.1 +0.4 1.7 rhamnogalacturonan acetylesterase compare
Xcc-8004.4253.1 +0.4 0.9 Transcriptional regulator, LysR family compare
Xcc-8004.3360.1 +0.4 1.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.946.1 +0.4 1.2 General secretion pathway protein H compare
Xcc-8004.2653.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.1654.1 +0.4 0.9 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.1728.1 +0.4 0.9 FIG01210339: hypothetical protein compare
Xcc-8004.4419.1 +0.4 1.2 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.402.1 +0.4 2.0 FIG01209770: hypothetical protein compare
Xcc-8004.872.1 +0.4 2.2 surface antigen gene compare
Xcc-8004.1064.1 +0.4 1.1 hypothetical protein compare
Xcc-8004.1450.1 +0.4 1.6 Queuosine Biosynthesis QueC ATPase compare
Xcc-8004.1456.1 +0.4 2.3 hypothetical protein compare
Xcc-8004.120.1 +0.4 1.5 FIG033680: Hypothetical protein compare
Xcc-8004.4391.1 +0.4 1.4 hypothetical protein compare
Xcc-8004.3493.1 +0.4 2.2 Putative deoxyribonuclease YjjV compare
Xcc-8004.1048.1 +0.4 0.8 Transcriptional regulator lysR family compare
Xcc-8004.2851.1 +0.4 2.0 Transcriptional regulator, ArsR family compare
Xcc-8004.4341.1 +0.4 1.4 FIG01210371: hypothetical protein compare
Xcc-8004.2319.1 +0.4 1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1894.1 +0.4 2.3 Proton/glutamate symport protein @ Sodium/glutamate symport protein compare
Xcc-8004.2816.1 +0.4 3.1 Flagellar motor switch protein FliM compare
Xcc-8004.3853.1 +0.4 0.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Xcc-8004.242.1 +0.4 1.7 hypothetical protein compare
Xcc-8004.873.1 +0.4 0.8 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.1264.1 +0.4 1.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1234.1 +0.4 1.6 Outer membrane protein W precursor compare
Xcc-8004.864.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.5164.1 +0.4 1.9 L-fuconolactone hydrolase compare
Xcc-8004.233.1 +0.4 1.7 FIG01211637: hypothetical protein compare
Xcc-8004.2911.1 +0.4 0.7 Transcription elongation factor GreA compare
Xcc-8004.1768.1 +0.4 0.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.2126.1 +0.4 2.2 D-amino-acid oxidase (EC 1.4.3.3) compare
Xcc-8004.54.1 +0.4 1.9 ThiJ/PfpI family protein compare
Xcc-8004.892.1 +0.4 1.0 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.3938.1 +0.4 2.3 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) compare
Xcc-8004.5047.1 +0.4 0.9 ABC-type multidrug transport system, ATPase component compare
Xcc-8004.3166.1 +0.4 1.6 Glycosyltransferase compare
Xcc-8004.4425.1 +0.4 1.5 General secretion pathway protein L compare
Xcc-8004.3365.1 +0.4 1.4 FIG01209831: hypothetical protein compare
Xcc-8004.2798.1 +0.4 2.8 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.1000.1 +0.4 1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4538.1 +0.4 0.8 hypothetical protein compare
Xcc-8004.4588.1 +0.4 1.1 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit compare
Xcc-8004.4304.1 +0.4 1.5 FIG01210543: hypothetical protein compare
Xcc-8004.3163.1 +0.4 1.5 Radical SAM domain protein compare
Xcc-8004.1835.1 +0.4 2.4 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
Xcc-8004.3778.1 +0.4 1.8 Transcriptional regulator compare
Xcc-8004.3526.1 +0.4 2.0 Outer membrane component of tripartite multidrug resistance system compare
Xcc-8004.27.1 +0.4 0.8 hypothetical protein compare
Xcc-8004.3634.1 +0.4 1.8 FIG01111117: hypothetical protein compare
Xcc-8004.1132.1 +0.4 0.8 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.4291.1 +0.4 1.7 Taurine-binding periplasmic protein TauA compare
Xcc-8004.1962.1 +0.4 1.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4821.1 +0.4 1.3 FIG01209726: hypothetical protein compare
Xcc-8004.3057.1 +0.3 2.1 GTP cyclohydrolase I (EC 3.5.4.16) type 2 compare
Xcc-8004.2655.1 +0.3 1.1 FIG024738: Hypothetical protein compare
Xcc-8004.1116.1 +0.3 2.0 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family compare
Xcc-8004.603.1 +0.3 1.5 hypothetical protein compare
Xcc-8004.1842.1 +0.3 2.3 Mlr3171 protein compare
Xcc-8004.998.1 +0.3 0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3742.1 +0.3 0.6 Type III effector compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms