Experiment set4IT055 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Furfuryl Alcohol 0.0625 vol%

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.6 -2.5 peroxidase compare
AO353_09315 -3.3 -11.6 LysR family transcriptional regulator compare
AO353_10670 -2.9 -8.5 shikimate dehydrogenase compare
AO353_12500 -2.9 -1.9 shikimate kinase compare
AO353_02070 -2.8 -8.1 prephenate dehydratase compare
AO353_00310 -2.7 -10.2 transaldolase compare
AO353_03615 -2.4 -3.5 cold-shock protein compare
AO353_10320 -2.3 -3.1 hypothetical protein compare
AO353_12115 -2.3 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_18540 -2.2 -2.6 pseudouridine synthase compare
AO353_07355 -2.2 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13100 -2.2 -2.5 GTPase RsgA compare
AO353_14220 -2.2 -2.4 ribosomal large subunit pseudouridine synthase D compare
AO353_10510 -2.1 -2.0 benzoate transporter compare
AO353_00825 -2.1 -5.0 porin compare
AO353_16805 -2.0 -6.8 recombinase RecA compare
AO353_11165 -2.0 -10.0 hypothetical protein compare
AO353_03580 -2.0 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_04355 -1.9 -2.5 homoserine dehydrogenase compare
AO353_02250 -1.8 -3.2 chorismate synthase compare
AO353_28210 -1.8 -3.5 2-haloalkanoic acid dehalogenase compare
AO353_03360 -1.8 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_20175 -1.7 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_09320 -1.7 -8.8 ATP-dependent DNA helicase RecG compare
AO353_06045 -1.7 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_22810 -1.6 -1.8 hypothetical protein compare
AO353_00495 -1.6 -2.1 DNA topoisomerase I compare
AO353_05420 -1.6 -2.0 peptide chain release factor 3 compare
AO353_16940 -1.6 -5.3 deoxycytidine triphosphate deaminase compare
AO353_14485 -1.6 -2.3 pseudouridine synthase compare
AO353_21625 -1.6 -2.7 Fe/S biogenesis protein NfuA compare
AO353_06040 -1.5 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_06050 -1.5 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_27435 -1.5 -1.5 hypothetical protein compare
AO353_14740 -1.5 -3.1 GTP-binding protein compare
AO353_09890 -1.5 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_11730 -1.4 -7.4 glutamate--cysteine ligase compare
AO353_14775 -1.4 -5.8 hypothetical protein compare
AO353_08880 -1.4 -2.4 exopolyphosphatase compare
AO353_04365 -1.4 -4.7 recombinase XerD compare
AO353_10455 -1.4 -1.6 tRNA modification GTPase MnmE compare
AO353_13925 -1.4 -2.8 XRE family transcriptional regulator compare
AO353_04240 -1.4 -2.3 chemotaxis protein CheW compare
AO353_16810 -1.3 -3.6 recombinase RecX compare
AO353_08165 -1.3 -2.9 pyrroline-5-carboxylate reductase compare
AO353_15185 -1.3 -4.7 ATPase compare
AO353_16835 -1.3 -2.4 LuxR family transcriptional regulator compare
AO353_02710 -1.3 -7.9 (p)ppGpp synthetase compare
AO353_04520 -1.3 -4.6 elongation factor 4 compare
AO353_14420 -1.3 -3.6 molecular chaperone DnaK compare
AO353_00430 -1.2 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_10930 -1.2 -5.9 DNA polymerase I compare
AO353_11770 -1.2 -1.9 molecular chaperone Hsp33 compare
AO353_27710 -1.2 -1.7 DNA repair protein compare
AO353_07685 -1.2 -3.7 hypothetical protein compare
AO353_17320 -1.2 -8.0 NADH:flavin oxidoreductase conserved
AO353_03585 -1.2 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_09050 -1.2 -3.4 recombinase XerC compare
AO353_07155 -1.2 -5.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_05880 -1.2 -1.5 plasmid stabilization protein compare
AO353_00515 -1.2 -2.8 hypothetical protein compare
AO353_06495 -1.2 -3.4 gamma-glutamyl phosphate reductase compare
AO353_08005 -1.2 -4.3 thioesterase compare
AO353_00660 -1.1 -2.6 transcriptional regulator compare
AO353_16040 -1.1 -2.2 hypothetical protein compare
AO353_20185 -1.1 -4.7 DNA-binding protein compare
AO353_09905 -1.1 -6.1 phosphate-binding protein compare
AO353_05625 -1.1 -1.5 transcription elongation factor GreA compare
AO353_00760 -1.1 -2.2 hypothetical protein compare
AO353_12105 -1.1 -4.9 peptidase S41 compare
AO353_04565 -1.1 -4.2 nucleoid-associated protein compare
AO353_04175 -1.1 -3.5 glycerol uptake facilitator GlpF compare
AO353_13200 -1.1 -6.8 exoribonuclease R compare
AO353_18555 -1.1 -7.7 aromatic amino acid transporter compare
AO353_12130 -1.1 -4.0 preprotein translocase subunit SecB compare
AO353_06540 -1.0 -2.0 hypothetical protein compare
AO353_08110 -1.0 -4.1 glutathione synthetase compare
AO353_24600 -1.0 -2.5 hypothetical protein compare
AO353_20170 -1.0 -3.6 trigger factor compare
AO353_23570 -1.0 -3.0 LysR family transcriptional regulator compare
AO353_04500 -1.0 -1.9 DNA repair protein RecO compare
AO353_23620 -1.0 -2.2 hypothetical protein compare
AO353_03710 -1.0 -1.9 formyltetrahydrofolate deformylase compare
AO353_16585 -1.0 -6.0 S-formylglutathione hydrolase conserved
AO353_09745 -1.0 -1.7 hypothetical protein compare
AO353_10055 -1.0 -6.8 DNA helicase II compare
AO353_27650 -1.0 -3.1 cell division protein FtsK compare
AO353_02975 -0.9 -2.5 aspartate kinase compare
AO353_09000 -0.9 -3.6 argininosuccinate lyase compare
AO353_20495 -0.9 -2.0 NUDIX hydrolase compare
AO353_08115 -0.9 -4.0 energy transducer TonB compare
AO353_00810 -0.9 -1.9 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_12935 -0.9 -2.7 glycosyltransferase compare
AO353_06725 -0.9 -1.7 hypothetical protein compare
AO353_00260 -0.9 -2.0 hypothetical protein compare
AO353_02040 -0.9 -2.0 integration host factor subunit beta compare
AO353_22150 -0.9 -1.7 iron transporter compare
AO353_20815 -0.9 -2.3 LacI family transcriptional regulator compare
AO353_03590 -0.9 -2.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_24340 -0.9 -1.7 TetR family transcriptional regulator compare
AO353_09900 -0.9 -6.0 phosphate ABC transporter permease compare
AO353_23945 -0.9 -1.3 hypothetical protein compare
AO353_28390 -0.9 -1.9 hypothetical protein compare
AO353_00650 -0.9 -1.8 cytochrome biogenesis protein compare
AO353_16195 -0.9 -1.6 DNA mismatch repair protein MutT compare
AO353_02075 -0.9 -5.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_03795 -0.9 -2.8 fumarate hydratase compare
AO353_09060 -0.8 -1.9 hypothetical protein compare
AO353_28960 -0.8 -2.4 Fis family transcriptional regulator compare
AO353_04965 -0.8 -2.9 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_26045 -0.8 -1.7 hypothetical protein compare
AO353_21895 -0.8 -2.3 molybdenum cofactor biosynthesis protein MoaD compare
AO353_10725 -0.8 -1.1 dodecin flavoprotein compare
AO353_05550 -0.8 -3.7 pseudouridine synthase compare
AO353_15830 -0.8 -2.1 transcriptional regulator compare
AO353_27695 -0.8 -4.0 isocitrate dehydrogenase compare
AO353_15875 -0.8 -2.6 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_09250 -0.8 -1.9 exodeoxyribonuclease III compare
AO353_13140 -0.8 -3.3 tRNA dimethylallyltransferase compare
AO353_14915 -0.8 -1.7 (2Fe-2S)-binding protein compare
AO353_24535 -0.8 -1.4 hypothetical protein compare
AO353_07645 -0.8 -1.1 sarcosine oxidase subunit gamma compare
AO353_07075 -0.8 -3.0 elongation factor Tu compare
AO353_09875 -0.8 -1.2 hypothetical protein compare
AO353_07250 -0.8 -1.3 polyamine ABC transporter permease compare
AO353_09040 -0.8 -1.4 diaminopimelate epimerase compare
AO353_04440 -0.8 -3.2 hypothetical protein compare
AO353_22600 -0.8 -1.4 hypothetical protein compare
AO353_00235 -0.8 -2.1 transcriptional regulator compare
AO353_13225 -0.8 -1.8 50S ribosomal protein L9 compare
AO353_22645 -0.7 -1.6 hypothetical protein compare
AO353_19500 -0.7 -2.0 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_23875 -0.7 -2.6 ketosteroid isomerase compare
AO353_25640 -0.7 -1.4 AsnC family transcriptional regulator compare
AO353_28035 -0.7 -2.9 hypothetical protein compare
AO353_06415 -0.7 -2.5 hypothetical protein compare
AO353_03100 -0.7 -1.2 XRE family transcriptional regulator compare
AO353_07315 -0.7 -1.6 rRNA methyltransferase compare
AO353_25585 -0.7 -1.2 argininosuccinate lyase compare
AO353_21640 -0.7 -1.7 cobalt transporter compare
AO353_23425 -0.7 -2.2 3-demethylubiquinone-9 3-methyltransferase compare
AO353_21430 -0.7 -1.4 hypothetical protein compare
AO353_05690 -0.7 -2.0 SsrA-binding protein compare
AO353_01355 -0.7 -3.4 3-oxoacyl-ACP synthase compare
AO353_02520 -0.7 -1.4 sodium transporter compare
AO353_26935 -0.7 -1.2 LysR family transcriptional regulator compare
AO353_04055 -0.7 -1.0 methionine--tRNA ligase compare
AO353_26525 -0.7 -1.4 hypothetical protein compare
AO353_16345 -0.7 -1.4 energy transducer TonB compare
AO353_25925 -0.7 -1.1 hypothetical protein compare
AO353_06865 -0.7 -5.5 catalase compare
AO353_14115 -0.7 -3.4 gamma-glutamyl kinase compare
AO353_13685 -0.7 -2.4 3-dehydroquinate dehydratase compare
AO353_23430 -0.7 -2.1 (2Fe-2S)-binding protein compare
AO353_00355 -0.7 -1.6 transcriptional regulator compare
AO353_14495 -0.7 -4.4 acetolactate synthase 3 catalytic subunit compare
AO353_28005 -0.7 -2.0 branched-chain amino acid ABC transporter permease compare
AO353_03330 -0.7 -2.4 aldehyde dehydrogenase compare
AO353_10440 -0.7 -2.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_14090 -0.7 -3.2 alkylphosphonate utilization protein compare
AO353_23985 -0.6 -2.6 isochorismate-pyruvate lyase compare
AO353_02640 -0.6 -1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_00855 -0.6 -3.0 Rieske iron-sulfur protein compare
AO353_12045 -0.6 -2.6 iron transporter compare
AO353_13635 -0.6 -2.7 hypothetical protein compare
AO353_28910 -0.6 -1.8 hypothetical protein compare
AO353_14940 -0.6 -2.0 malate:quinone oxidoreductase compare
AO353_00620 -0.6 -1.4 cytochrome C oxidase Cbb3 compare
AO353_03470 -0.6 -2.7 arginine deiminase compare
AO353_03640 -0.6 -2.8 nucleotide-binding protein compare
AO353_20860 -0.6 -1.5 hypothetical protein compare
AO353_17460 -0.6 -2.5 hypothetical protein compare
AO353_25945 -0.6 -1.1 hypothetical protein compare
AO353_11920 -0.6 -1.7 hypothetical protein compare
AO353_17675 -0.6 -2.6 hypothetical protein compare
AO353_12880 -0.6 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_23160 -0.6 -2.3 hydrolase compare
AO353_04360 -0.6 -3.2 protein-disulfide isomerase compare
AO353_27935 -0.6 -2.0 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_27155 -0.6 -1.5 hypothetical protein compare
AO353_06480 -0.6 -1.5 50S rRNA methyltransferase compare
AO353_11750 -0.6 -1.4 ATPase compare
AO353_20565 -0.6 -1.1 tRNA-Ala compare
AO353_12650 -0.6 -1.1 hypothetical protein compare
AO353_23810 -0.6 -2.0 transcriptional regulator compare
AO353_10950 -0.6 -4.0 thiol:disulfide interchange protein compare
AO353_23720 -0.6 -2.0 BatB protein compare
AO353_11850 -0.6 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_01690 -0.6 -3.0 hypothetical protein compare
AO353_14450 -0.6 -2.3 hemin ABC transporter ATP-binding protein compare
AO353_11830 -0.6 -3.0 formate dehydrogenase family accessory protein FdhD compare
AO353_12365 -0.6 -1.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_26995 -0.6 -2.0 hypothetical protein compare
AO353_06490 -0.6 -1.9 nicotinate-nucleotide adenylyltransferase compare
AO353_19610 -0.6 -1.5 hypothetical protein compare
AO353_23015 -0.6 -2.2 histidine kinase compare
AO353_12690 -0.6 -0.8 acyl carrier protein compare
AO353_27720 -0.6 -2.0 cupin compare
AO353_02765 -0.6 -1.7 NAD(P)H-quinone oxidoreductase compare
AO353_06175 -0.6 -2.9 shikimate dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Furfuryl Alcohol in Pseudomonas fluorescens FW300-N2E3

For stress Furfuryl Alcohol across organisms