Experiment set4IT055 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2105 -2.8 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5357 -2.5 -3.1 hypothetical protein compare
Pf1N1B4_4038 -2.0 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1234 -1.8 -4.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_175 -1.7 -2.6 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_339 -1.6 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_875 -1.6 -2.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3143 -1.5 -2.7 RecA protein compare
Pf1N1B4_5906 -1.5 -3.4 Esterase/lipase compare
Pf1N1B4_2209 -1.4 -7.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5330 -1.4 -1.2 hypothetical protein compare
Pf1N1B4_866 -1.4 -2.1 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2674 -1.4 -1.6 hypothetical protein compare
Pf1N1B4_3833 -1.3 -6.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2114 -1.3 -5.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3936 -1.3 -2.8 Transcriptional regulator, LysR family compare
Pf1N1B4_846 -1.3 -1.6 hypothetical protein compare
Pf1N1B4_5448 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_1059 -1.3 -2.6 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_29 -1.3 -2.5 FIG00967200: hypothetical protein compare
Pf1N1B4_3403 -1.3 -2.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_1180 -1.2 -1.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1307 -1.2 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1568 -1.2 -3.3 Twin-arginine translocation protein TatB compare
Pf1N1B4_2612 -1.2 -3.1 Putative transport protein compare
Pf1N1B4_3768 -1.2 -1.8 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1906 -1.2 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4134 -1.2 -2.6 Na+ driven multidrug efflux pump compare
Pf1N1B4_4436 -1.2 -3.0 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_2178 -1.2 -1.6 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_1971 -1.2 -3.1 SAM-dependent methyltransferases compare
Pf1N1B4_3906 -1.1 -3.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2935 -1.1 -1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_539 -1.1 -1.8 Transcriptional regulators compare
Pf1N1B4_438 -1.1 -3.2 hypothetical protein compare
Pf1N1B4_1317 -1.1 -2.3 Sensor histidine kinase/response regulator compare
Pf1N1B4_4931 -1.1 -2.1 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_3290 -1.1 -2.3 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_224 -1.1 -2.0 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_2400 -1.1 -2.2 FIG00955006: hypothetical protein compare
Pf1N1B4_4028 -1.1 -2.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4195 -1.1 -3.2 Transcriptional regulator, TetR family compare
Pf1N1B4_4531 -1.1 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_2734 -1.0 -1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_4671 -1.0 -2.3 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4585 -1.0 -2.3 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_108 -1.0 -1.9 FIG00954456: hypothetical protein compare
Pf1N1B4_2552 -1.0 -2.1 OsmC/Ohr family protein compare
Pf1N1B4_2885 -1.0 -4.0 Paraquat-inducible protein A compare
Pf1N1B4_617 -1.0 -1.8 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_901 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_5383 -1.0 -6.2 hypothetical protein compare
Pf1N1B4_656 -1.0 -5.1 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_372 -1.0 -2.2 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_4517 -1.0 -2.2 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_4857 -1.0 -3.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4219 -1.0 -2.3 FIG01074225: hypothetical protein compare
Pf1N1B4_1570 -1.0 -2.9 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_769 -1.0 -4.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_5224 -1.0 -2.3 tRNA-Arg-CCT compare
Pf1N1B4_4523 -1.0 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1105 -1.0 -1.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4763 -1.0 -2.8 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_3093 -1.0 -1.5 Outer membrane protein H precursor compare
Pf1N1B4_3590 -1.0 -4.4 hypothetical protein compare
Pf1N1B4_2352 -1.0 -3.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_2171 -1.0 -2.2 Tyrosine recombinase XerC compare
Pf1N1B4_814 -0.9 -1.9 Transcriptional regulator, PadR family compare
Pf1N1B4_327 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_1540 -0.9 -2.4 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_1675 -0.9 -1.8 Transcriptional regulator compare
Pf1N1B4_2421 -0.9 -2.2 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_188 -0.9 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5568 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5722 -0.9 -1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3629 -0.9 -2.7 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf1N1B4_3416 -0.9 -3.3 Outer membrane protein romA compare
Pf1N1B4_2339 -0.9 -1.8 COG1872 compare
Pf1N1B4_1126 -0.9 -2.0 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_341 -0.9 -3.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_1 -0.9 -1.6 Colicin V production protein compare
Pf1N1B4_2684 -0.9 -1.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5346 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_2568 -0.9 -1.8 Translation elongation factor Tu compare
Pf1N1B4_578 -0.9 -1.9 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5777 -0.9 -2.3 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_4494 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5721 -0.9 -1.5 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3965 -0.9 -1.6 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_5745 -0.9 -2.0 FIG139928: Putative protease compare
Pf1N1B4_2401 -0.9 -1.4 Lipoprotein, putative compare
Pf1N1B4_5720 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_3331 -0.8 -2.1 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5923 -0.8 -1.6 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_3074 -0.8 -1.6 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_3866 -0.8 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_1619 -0.8 -4.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_5133 -0.8 -2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_2037 -0.8 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_2384 -0.8 -5.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_733 -0.8 -1.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5760 -0.8 -1.9 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_92 -0.8 -2.2 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_3980 -0.8 -1.9 Transcriptional regulator, HxlR family compare
Pf1N1B4_5254 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_2250 -0.8 -3.1 Alkanesulfonates transport system permease protein compare
Pf1N1B4_49 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2891 -0.8 -2.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_5768 -0.8 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_4368 -0.8 -2.4 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_412 -0.8 -1.2 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_1579 -0.8 -2.5 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_350 -0.8 -3.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_243 -0.8 -3.4 Ammonium transporter compare
Pf1N1B4_4156 -0.8 -1.7 putative secreted protein compare
Pf1N1B4_3020 -0.8 -2.9 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_2917 -0.8 -3.9 FIG140336: TPR domain protein compare
Pf1N1B4_3685 -0.8 -2.4 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_4247 -0.8 -2.1 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_4320 -0.8 -2.0 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_2718 -0.8 -3.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_1830 -0.8 -4.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3011 -0.8 -1.4 Tyrosine recombinase XerD compare
Pf1N1B4_5470 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_740 -0.8 -1.8 Leucyl-tRNA synthetase compare
Pf1N1B4_683 -0.8 -2.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1874 -0.8 -1.9 FIG00953549: hypothetical protein compare
Pf1N1B4_5359 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2640 -0.7 -2.3 FIG003461: hypothetical protein compare
Pf1N1B4_2479 -0.7 -1.5 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_2071 -0.7 -1.1 Protein phosphatase ImpM compare
Pf1N1B4_2417 -0.7 -1.7 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3812 -0.7 -4.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4601 -0.7 -1.6 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf1N1B4_4335 -0.7 -1.2 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_35 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2164 -0.7 -2.3 Prophage antirepressor compare
Pf1N1B4_4040 -0.7 -1.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1679 -0.7 -1.0 Membrane-fusion protein compare
Pf1N1B4_883 -0.7 -1.3 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_1403 -0.7 -3.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_724 -0.7 -1.5 DNA-binding response regulator ColR compare
Pf1N1B4_1872 -0.7 -3.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_4041 -0.7 -1.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_5519 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_1762 -0.7 -1.9 FIG00957387: hypothetical protein compare
Pf1N1B4_4212 -0.7 -1.4 Gfa-like protein compare
Pf1N1B4_2036 -0.7 -2.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_5047 -0.7 -2.6 Integral membrane protein TerC compare
Pf1N1B4_1458 -0.7 -3.5 Probable transcription regulator Mig-14 compare
Pf1N1B4_4108 -0.7 -1.1 Hydrolase, alpha/beta fold family compare
Pf1N1B4_5453 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_1329 -0.7 -3.1 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1837 -0.7 -1.3 Osmotically inducible protein C compare
Pf1N1B4_4540 -0.7 -1.6 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_1613 -0.7 -1.5 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_3012 -0.7 -1.7 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_2733 -0.7 -1.4 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_3386 -0.7 -2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_3591 -0.7 -3.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_981 -0.7 -1.8 UPF0246 protein YaaA compare
Pf1N1B4_4392 -0.7 -2.0 MocE compare
Pf1N1B4_3484 -0.7 -2.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_980 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_1236 -0.7 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1827 -0.7 -2.1 FIG00953482: hypothetical protein compare
Pf1N1B4_2223 -0.7 -3.6 FIG006231: RNA-binding protein compare
Pf1N1B4_3454 -0.7 -2.7 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_4509 -0.7 -1.5 Aldose 1-epimerase compare
Pf1N1B4_734 -0.7 -1.6 Electron transport complex protein RnfA compare
Pf1N1B4_176 -0.7 -2.3 Acetylpolyamine aminohydrolase compare
Pf1N1B4_1057 -0.7 -1.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3132 -0.7 -1.8 FIG121501: Prophage tail protein compare
Pf1N1B4_4377 -0.7 -2.1 Cell wall hydrolyses involved in spore germination compare
Pf1N1B4_3365 -0.7 -2.6 Sialic acid transporter (permease) NanT compare
Pf1N1B4_4759 -0.7 -1.2 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_3559 -0.7 -4.7 Aromatic amino acid transport protein AroP compare
Pf1N1B4_4849 -0.6 -1.4 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_399 -0.6 -1.3 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_4301 -0.6 -1.8 hypothetical protein compare
Pf1N1B4_554 -0.6 -2.0 Putative threonine efflux protein compare
Pf1N1B4_4566 -0.6 -1.5 Universal stress protein family 7 compare
Pf1N1B4_5239 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_2609 -0.6 -4.8 Catalase (EC 1.11.1.6) compare
Pf1N1B4_765 -0.6 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_763 -0.6 -1.9 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_4962 -0.6 -1.8 C4-dicarboxylate transport protein compare
Pf1N1B4_1328 -0.6 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4446 -0.6 -1.2 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2886 -0.6 -4.3 Paraquat-inducible protein B compare
Pf1N1B4_730 -0.6 -2.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_932 -0.6 -0.7 FIG00963370: hypothetical protein compare
Pf1N1B4_5055 -0.6 -1.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_5039 -0.6 -1.8 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_4039 -0.6 -2.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_5136 -0.6 -3.1 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_778 -0.6 -2.6 hypothetical protein compare
Pf1N1B4_2155 -0.6 -2.1 Glycine cleavage system transcriptional activator compare
Pf1N1B4_4473 -0.6 -1.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4445 -0.6 -2.3 acetyltransferase, GNAT family compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments