Experiment set4IT055 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x - replicate 3

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -3.6 -3.4 Phosphoserine phosphatase compare
Xcc-8004.5192.1 -3.1 -12.0 hypothetical protein compare
Xcc-8004.4286.1 -3.0 -8.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.5193.1 -3.0 -18.0 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.1336.1 -2.8 -8.8 two-component system sensor protein compare
Xcc-8004.907.1 -2.7 -16.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.884.1 -2.7 -5.9 Rod shape-determining protein MreD compare
Xcc-8004.1763.1 -2.6 -4.1 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3346.1 -2.2 -2.9 hypothetical protein compare
Xcc-8004.589.1 -2.1 -3.4 hypothetical protein compare
Xcc-8004.1282.1 -2.1 -6.6 sulfur deprivation response regulator compare
Xcc-8004.4732.1 -2.1 -1.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.271.1 -2.1 -3.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3304.1 -2.0 -2.3 FIG01211108: hypothetical protein compare
Xcc-8004.1241.1 -2.0 -5.6 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.5205.1 -2.0 -4.8 FIG01210461: hypothetical protein compare
Xcc-8004.4112.1 -1.9 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2217.1 -1.9 -3.9 FIG01209779: hypothetical protein compare
Xcc-8004.495.1 -1.9 -7.1 EpiH/GdmH-related protein compare
Xcc-8004.1236.1 -1.9 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4616.1 -1.8 -6.9 Sensor histidine kinase compare
Xcc-8004.4620.1 -1.8 -7.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.171.1 -1.7 -2.1 hypothetical protein compare
Xcc-8004.1871.1 -1.7 -3.5 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4877.1 -1.7 -14.3 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.4039.1 -1.7 -3.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.29.1 -1.7 -6.7 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.3433.1 -1.6 -6.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.270.1 -1.6 -6.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.2335.1 -1.6 -5.7 Transport ATP-binding protein CydC compare
Xcc-8004.234.1 -1.5 -8.5 cardiolipin synthase compare
Xcc-8004.3942.1 -1.5 -2.6 RelE/StbE replicon stabilization toxin compare
Xcc-8004.4510.1 -1.4 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.4752.1 -1.4 -2.3 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4225.1 -1.4 -2.3 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.1727.1 -1.4 -1.8 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1334.1 -1.4 -1.7 hypothetical protein compare
Xcc-8004.2215.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.4948.1 -1.3 -1.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.543.1 -1.3 -3.5 FIG01210004: hypothetical protein compare
Xcc-8004.914.1 -1.3 -6.4 tail-specific protease compare
Xcc-8004.2956.1 -1.3 -2.7 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.2713.1 -1.3 -1.3 Nitrate/nitrite transporter compare
Xcc-8004.3054.1 -1.3 -1.5 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3723.1 -1.2 -2.2 hypothetical protein compare
Xcc-8004.3395.1 -1.2 -2.3 Transcriptional regulator, GntR family compare
Xcc-8004.932.1 -1.2 -4.9 histidine kinase/response regulator hybrid protein compare
Xcc-8004.1436.1 -1.2 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.574.1 -1.2 -5.2 Di-/tripeptide transporter compare
Xcc-8004.2614.1 -1.2 -2.9 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4737.1 -1.2 -3.4 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4824.1 -1.1 -7.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2334.1 -1.1 -4.8 Transport ATP-binding protein CydD compare
Xcc-8004.2356.1 -1.1 -3.5 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3230.1 -1.1 -2.5 Phage DNA invertase compare
Xcc-8004.2357.1 -1.1 -2.3 Segregation and condensation protein B compare
Xcc-8004.5140.1 -1.1 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.2449.1 -1.1 -4.0 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3726.1 -1.1 -1.3 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3655.1 -1.1 -1.7 FIG01210025: hypothetical protein compare
Xcc-8004.4776.1 -1.1 -1.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.726.1 -1.1 -1.1 Putative preQ0 transporter compare
Xcc-8004.998.1 -1.1 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5367.1 -1.0 -4.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.1108.1 -1.0 -1.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4441.1 -1.0 -2.6 Tyrosine recombinase XerD compare
Xcc-8004.4457.1 -1.0 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.2333.1 -1.0 -5.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.5365.1 -1.0 -4.7 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.4871.1 -1.0 -0.8 Phage tail completion protein compare
Xcc-8004.3049.1 -1.0 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2945.1 -1.0 -2.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.4102.1 -0.9 -1.3 FIG01211949: hypothetical protein compare
Xcc-8004.4852.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.4168.1 -0.9 -2.7 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.1058.1 -0.9 -2.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.4775.1 -0.9 -4.5 Cell division protein FtsX compare
Xcc-8004.1950.1 -0.9 -2.5 FIG01210891: hypothetical protein compare
Xcc-8004.4210.1 -0.9 -3.1 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.1685.1 -0.9 -1.3 hypothetical protein compare
Xcc-8004.5368.1 -0.9 -2.0 FIG01210868: hypothetical protein compare
Xcc-8004.4561.1 -0.9 -3.1 Sensor histidine kinase compare
Xcc-8004.3647.1 -0.9 -3.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3923.1 -0.9 -1.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1448.1 -0.9 -4.2 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Xcc-8004.3722.1 -0.9 -1.1 HrpB7 protein compare
Xcc-8004.4170.1 -0.8 -1.4 LSU ribosomal protein L25p compare
Xcc-8004.1511.1 -0.8 -2.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2346.1 -0.8 -1.4 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4275.1 -0.8 -3.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2386.1 -0.8 -6.2 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.2385.1 -0.8 -4.6 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.3861.1 -0.8 -3.4 FIG01210504: hypothetical protein compare
Xcc-8004.4738.1 -0.8 -5.1 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2949.1 -0.8 -1.8 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.3663.1 -0.8 -2.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.2922.1 -0.8 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.679.1 -0.8 -2.0 23Sr RNA gene compare
Xcc-8004.127.1 -0.8 -1.1 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4092.1 -0.8 -4.7 FIG01209901: hypothetical protein compare
Xcc-8004.3296.1 -0.8 -2.6 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.3310.1 -0.8 -2.7 Chromosome partition protein smc compare
Xcc-8004.2372.1 -0.8 -3.5 Pheromone shutdown protein compare
Xcc-8004.5231.1 -0.8 -2.4 hypothetical protein compare
Xcc-8004.5366.1 -0.8 -5.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.2168.1 -0.8 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3750.1 -0.8 -2.7 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.4466.1 -0.8 -3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.970.1 -0.8 -2.2 Probable cytochrome c2 compare
Xcc-8004.2561.1 -0.8 -4.2 FIG01213638: hypothetical protein compare
Xcc-8004.2169.1 -0.7 -2.0 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.480.1 -0.7 -2.9 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Xcc-8004.4254.1 -0.7 -2.3 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.1147.1 -0.7 -3.5 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Xcc-8004.5166.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.3775.1 -0.7 -2.3 FIG001154: CcsA-related protein compare
Xcc-8004.3498.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.3703.1 -0.7 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4467.1 -0.7 -3.2 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.740.1 -0.7 -1.7 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.1654.1 -0.7 -1.2 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.3473.1 -0.7 -0.8 FIG01213437: hypothetical protein compare
Xcc-8004.4302.1 -0.7 -3.2 Ribokinase (EC 2.7.1.15) compare
Xcc-8004.273.1 -0.7 -4.5 FIG01209870: hypothetical protein compare
Xcc-8004.3756.1 -0.7 -2.3 Glyoxalase family protein compare
Xcc-8004.629.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.1890.1 -0.7 -2.6 hypothetical protein compare
Xcc-8004.2079.1 -0.7 -2.0 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.790.1 -0.7 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.930.1 -0.7 -4.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.1504.1 -0.7 -1.2 type IV pili signal transduction protein PilI compare
Xcc-8004.792.1 -0.7 -2.6 FIG01211403: hypothetical protein compare
Xcc-8004.2086.1 -0.7 -1.4 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.3863.1 -0.7 -2.0 Septum site-determining protein MinD compare
Xcc-8004.5253.1 -0.7 -0.9 hypothetical protein compare
Xcc-8004.1841.1 -0.7 -1.9 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.1164.1 -0.7 -2.1 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2839.1 -0.7 -0.9 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.2358.1 -0.7 -3.6 Segregation and condensation protein A compare
Xcc-8004.5328.1 -0.7 -2.2 Mobile element protein compare
Xcc-8004.4640.1 -0.7 -1.3 FIG01210726: hypothetical protein compare
Xcc-8004.94.1 -0.7 -1.1 Transcriptional regulator, LuxR family compare
Xcc-8004.5226.1 -0.7 -1.3 FIG01212167: hypothetical protein compare
Xcc-8004.4446.1 -0.7 -2.6 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.916.1 -0.6 -2.3 transcriptional regulator compare
Xcc-8004.4428.1 -0.6 -1.4 General secretion pathway protein I compare
Xcc-8004.4935.1 -0.6 -1.8 FIG01213190: hypothetical protein compare
Xcc-8004.3509.1 -0.6 -2.6 Glutathione peroxidase family protein compare
Xcc-8004.438.1 -0.6 -2.4 hypothetical protein compare
Xcc-8004.4464.1 -0.6 -3.7 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.3483.1 -0.6 -3.0 Outer membrane protein A precursor compare
Xcc-8004.590.1 -0.6 -2.7 FIG01210288: hypothetical protein compare
Xcc-8004.3681.1 -0.6 -3.4 RNA polymerase sigma factor RpoE compare
Xcc-8004.4557.1 -0.6 -1.3 ABC transporter ATP-binding protein compare
Xcc-8004.4100.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.108.1 -0.6 -2.0 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.2646.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.3898.1 -0.6 -0.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.1811.1 -0.6 -1.3 extracellular serine protease compare
Xcc-8004.4955.1 -0.6 -2.9 Catalase (EC 1.11.1.6) compare
Xcc-8004.2987.1 -0.6 -2.4 hypothetical protein compare
Xcc-8004.2081.1 -0.6 -1.3 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.665.1 -0.6 -2.2 FIG01211711: hypothetical protein compare
Xcc-8004.3231.1 -0.6 -1.6 hypothetical protein compare
Xcc-8004.279.1 -0.6 -1.7 FIG01210420: hypothetical protein compare
Xcc-8004.1515.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.3955.1 -0.6 -2.3 HflK protein compare
Xcc-8004.4759.1 -0.6 -4.6 protease IV compare
Xcc-8004.364.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.432.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.143.1 -0.6 -2.3 hypothetical protein compare
Xcc-8004.1776.1 -0.6 -1.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.2332.1 -0.6 -2.8 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4521.1 -0.6 -2.6 outer membrane protein compare
Xcc-8004.1019.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.4507.1 -0.6 -2.0 Glycosyltransferase compare
Xcc-8004.837.1 -0.6 -0.8 FIG01210690: hypothetical protein compare
Xcc-8004.950.1 -0.6 -1.0 General secretion pathway protein L compare
Xcc-8004.898.1 -0.6 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2361.1 -0.6 -1.5 Cell division protein BolA compare
Xcc-8004.3980.1 -0.6 -2.0 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.1491.1 -0.6 -4.3 Glycosyltransferase compare
Xcc-8004.299.1 -0.6 -1.2 Acyltransferase compare
Xcc-8004.1616.1 -0.6 -0.9 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.3862.1 -0.6 -2.4 Septum site-determining protein MinC compare
Xcc-8004.559.1 -0.6 -1.5 FIG01213048: hypothetical protein compare
Xcc-8004.4853.1 -0.6 -1.6 hypothetical protein compare
Xcc-8004.4539.1 -0.6 -3.1 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.3212.1 -0.6 -1.3 phage-related integrase compare
Xcc-8004.1522.1 -0.5 -2.2 Putative predicted metal-dependent hydrolase compare
Xcc-8004.2831.1 -0.5 -2.9 Flagellar synthesis regulator FleN compare
Xcc-8004.4473.1 -0.5 -4.4 FIG01212400: hypothetical protein compare
Xcc-8004.4368.1 -0.5 -1.0 FIG01209977: hypothetical protein compare
Xcc-8004.4665.1 -0.5 -1.5 FIG01211765: hypothetical protein compare
Xcc-8004.2881.1 -0.5 -1.6 FIG01210399: hypothetical protein compare
Xcc-8004.2734.1 -0.5 -2.3 Mlr7403 protein compare
Xcc-8004.306.1 -0.5 -2.3 Glyoxalase family protein compare
Xcc-8004.3479.1 -0.5 -0.9 aklaviketone reductase compare
Xcc-8004.2659.1 -0.5 -1.4 FIG01212223: hypothetical protein compare
Xcc-8004.3013.1 -0.5 -0.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB across organisms