Experiment set4IT055 for Methanococcus maripaludis S2

Compare to:

Formate deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05500 -10.4 -7.2 2-isopropylmalate synthase compare
MMP_RS07845 -9.7 -4.8 LL-diaminopimelate aminotransferase compare
MMP_RS06680 -8.7 -15.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01455 -8.2 -9.3 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06715 -7.8 -20.8 cache domain-containing protein compare
MMP_RS06685 -7.8 -17.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06700 -7.7 -17.0 hypothetical protein compare
MMP_RS07345 -7.6 -7.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS03450 -7.4 -4.7 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -7.4 -7.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06720 -7.3 -7.6 response regulator transcription factor compare
MMP_RS04215 -7.2 -13.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06350 -7.2 -7.9 HesA/MoeB/ThiF family protein compare
MMP_RS03015 -7.1 -13.7 GTP 3' 8-cyclase MoaA compare
MMP_RS06375 -6.8 -6.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05930 -6.4 -4.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS06270 -6.4 -10.7 TIGR00300 family protein compare
MMP_RS05515 -6.1 -5.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06355 -6.0 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03315 -6.0 -2.9 ferrous iron transport protein A compare
MMP_RS03600 -5.8 -4.9 triose-phosphate isomerase compare
MMP_RS04615 -5.8 -5.9 PDGLE domain-containing protein compare
MMP_RS08720 -5.8 -3.2 4Fe-4S binding protein compare
MMP_RS07365 -5.7 -12.1 2-phosphoglycerate kinase compare
MMP_RS03435 -5.6 -4.3 ketol-acid reductoisomerase compare
MMP_RS08635 -5.5 -3.8 UbiA family prenyltransferase compare
MMP_RS06705 -5.5 -8.1 formate/nitrite transporter family protein compare
MMP_RS06230 -5.4 -5.3 helix-turn-helix domain-containing protein compare
MMP_RS06345 -5.4 -12.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01005 -5.3 -2.1 riboflavin synthase compare
MMP_RS01545 -5.3 -2.2 CBS domain-containing protein compare
MMP_RS05265 -5.3 -5.1 2-isopropylmalate synthase compare
MMP_RS05555 -5.2 -2.1 DUF4040 domain-containing protein compare
MMP_RS07730 -5.2 -4.4 pyruvate synthase subunit beta compare
MMP_RS03640 -5.1 -6.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07005 -5.1 -1.4 4Fe-4S binding protein compare
MMP_RS01755 -5.0 -2.0 DUF2097 domain-containing protein compare
MMP_RS01500 -5.0 -4.6 CBS domain-containing protein compare
MMP_RS06730 -5.0 -3.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS00300 -5.0 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01020 -5.0 -2.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03035 -4.9 -7.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS00685 -4.9 -8.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08300 -4.9 -2.4 metal-sulfur cluster assembly factor compare
MMP_RS08460 -4.8 -4.2 proteasome-activating nucleotidase compare
MMP_RS04620 -4.7 -17.8 cobalt transporter CbiM compare
MMP_RS06400 -4.7 -3.1 4Fe-4S binding protein compare
MMP_RS06895 -4.7 -3.2 selenocysteine-specific translation elongation factor compare
MMP_RS06295 -4.6 -12.2 methanogenesis marker 14 protein compare
MMP_RS06340 -4.6 -16.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04605 -4.6 -8.8 cobalt ECF transporter T component CbiQ compare
MMP_RS09020 -4.6 -3.3 hypothetical protein compare
MMP_RS05425 -4.6 -8.9 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07630 -4.5 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS08790 -4.5 -3.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS02195 -4.4 -7.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08745 -4.3 -10.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01380 -4.3 -6.9 PHP domain-containing protein compare
MMP_RS05095 -4.3 -10.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06370 -4.3 -7.5 biotin synthase BioB compare
MMP_RS07185 -4.3 -14.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00305 -4.3 -4.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS07380 -4.3 -3.7 transcription elongation factor Spt5 compare
MMP_RS07635 -4.2 -8.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00695 -4.2 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00295 -4.2 -3.5 gamma carbonic anhydrase family protein compare
MMP_RS08715 -4.1 -3.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04890 -4.1 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06285 -4.1 -4.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07575 -4.1 -5.5 RNA ligase partner protein compare
MMP_RS07735 -4.0 -1.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06630 -4.0 -2.3 UPF0058 family protein compare
MMP_RS04500 -4.0 -22.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02280 -4.0 -1.9 DUF211 domain-containing protein compare
MMP_RS04780 -4.0 -6.1 ribonuclease P compare
MMP_RS08105 -3.9 -12.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS04685 -3.9 -5.2 DUF126 domain-containing protein compare
MMP_RS05100 -3.9 -25.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05090 -3.9 -15.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS08820 -3.9 -6.0 hypothetical protein compare
MMP_RS06925 -3.9 -4.8 ribonuclease VapC4 compare
MMP_RS05075 -3.9 -23.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS01700 -3.8 -2.2 dihydroxy-acid dehydratase compare
MMP_RS08650 -3.8 -7.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01830 -3.8 -3.8 tRNA-Val compare
MMP_RS05070 -3.8 -13.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS05080 -3.7 -15.6 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05085 -3.7 -14.4 AAA family ATPase compare
MMP_RS02240 -3.7 -7.0 methanogenesis marker 7 protein compare
MMP_RS07445 -3.7 -6.8 helix-turn-helix domain-containing protein compare
MMP_RS05060 -3.7 -16.7 AAA family ATPase compare
MMP_RS07580 -3.7 -4.4 DUF356 domain-containing protein compare
MMP_RS07645 -3.7 -11.2 aldehyde dehydrogenase family protein compare
MMP_RS03475 -3.6 -1.4 hypothetical protein compare
MMP_RS08100 -3.6 -10.0 8-amino-7-oxononanoate synthase compare
MMP_RS05055 -3.6 -21.1 DUF166 domain-containing protein compare
MMP_RS08095 -3.6 -12.4 dethiobiotin synthase compare
MMP_RS02145 -3.5 -10.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS03960 -3.5 -2.0 hypothetical protein compare
MMP_RS07555 -3.5 -1.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS06625 -3.4 -5.1 DNA primase compare
MMP_RS08240 -3.4 -15.8 methanogenesis marker 16 metalloprotein compare
MMP_RS06975 -3.4 -3.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS02010 -3.4 -15.7 PHP domain-containing protein compare
MMP_RS03025 -3.3 -9.5 molybdenum cofactor guanylyltransferase compare
MMP_RS03400 -3.3 -4.7 archease compare
MMP_RS04585 -3.3 -11.7 AIR synthase related protein compare
MMP_RS05925 -3.3 -7.3 small nuclear ribonucleoprotein compare
MMP_RS02900 -3.3 -1.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01795 -3.3 -2.9 methanogenesis marker 6 protein compare
MMP_RS02875 -3.2 -13.7 chorismate pyruvate-lyase family protein compare
MMP_RS02355 -3.2 -6.7 30S ribosomal protein S27ae compare
MMP_RS05065 -3.2 -8.5 CooT family nickel-binding protein compare
MMP_RS06120 -3.2 -4.1 UPF0147 family protein compare
MMP_RS01225 -3.1 -7.1 DUF5379 domain-containing protein compare
MMP_RS08645 -3.1 -11.2 UPF0179 family protein compare
MMP_RS01610 -3.0 -4.3 hypothetical protein compare
MMP_RS03420 -3.0 -3.6 acetolactate synthase small subunit compare
MMP_RS05550 -3.0 -1.5 cation:proton antiporter compare
MMP_RS05875 -3.0 -6.3 hydroxyethylthiazole kinase compare
MMP_RS01385 -3.0 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06315 -3.0 -2.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00515 -3.0 -2.0 DUF655 domain-containing protein compare
MMP_RS01325 -3.0 -4.3 dihydroneopterin aldolase family protein compare
MMP_RS08210 -3.0 -4.8 phosphatidylglycerophosphatase A compare
MMP_RS06020 -2.9 -7.4 archaeoflavoprotein AfpA compare
MMP_RS08165 -2.9 -4.1 phosphoglycerate dehydrogenase compare
MMP_RS00895 -2.9 -5.9 hypothetical protein compare
MMP_RS00290 -2.9 -7.0 hypothetical protein compare
MMP_RS01985 -2.9 -9.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04775 -2.8 -4.6 adenosylhomocysteinase compare
MMP_RS07605 -2.8 -6.4 diadenylate cyclase compare
MMP_RS02235 -2.8 -12.8 CBS domain-containing protein compare
MMP_RS07525 -2.8 -11.4 4Fe-4S binding protein compare
MMP_RS07195 -2.8 -11.3 M20 family metallo-hydrolase compare
MMP_RS07600 -2.7 -6.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02345 -2.7 -6.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04790 -2.7 -16.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03580 -2.7 -7.1 signal recognition particle-docking protein FtsY compare
MMP_RS08330 -2.7 -7.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS08435 -2.6 -3.7 Era-like GTP-binding protein compare
MMP_RS00750 -2.6 -3.9 fumarate hydratase compare
MMP_RS01265 -2.6 -5.3 hypothetical protein compare
MMP_RS05845 -2.6 -3.5 tRNA-intron lyase compare
MMP_RS01800 -2.6 -6.9 TIGR00303 family protein compare
MMP_RS05920 -2.5 -1.4 50S ribosomal protein L37e compare
MMP_RS00115 -2.5 -15.6 radical SAM protein compare
MMP_RS02340 -2.4 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01725 -2.4 -5.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS01220 -2.4 -10.6 hypothetical protein compare
MMP_RS07200 -2.3 -8.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02135 -2.2 -5.0 DUF5612 domain-containing protein compare
MMP_RS03205 -2.2 -2.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00455 -2.1 -10.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS03445 -2.1 -2.0 methanogenesis marker 17 protein compare
MMP_RS01475 -2.1 -8.3 phosphosulfolactate synthase compare
MMP_RS06105 -2.1 -10.5 hydrogenase maturation peptidase HycI compare
MMP_RS00985 -2.0 -6.5 CDC48 family AAA ATPase compare
MMP_RS04870 -2.0 -6.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS06130 -2.0 -6.7 peptidylprolyl isomerase compare
MMP_RS06885 -2.0 -5.5 50S ribosome-binding GTPase compare
MMP_RS05540 -1.9 -2.8 hypothetical protein compare
MMP_RS06175 -1.9 -10.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS06475 -1.9 -8.6 FAD-dependent oxidoreductase compare
MMP_RS01865 -1.9 -3.3 GPR1/FUN34/YaaH family transporter compare
MMP_RS05345 -1.9 -8.4 hypothetical protein compare
MMP_RS07545 -1.9 -1.3 HTH domain-containing protein compare
MMP_RS05440 -1.9 -11.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS08760 -1.9 -2.3 hypothetical protein compare
MMP_RS05850 -1.9 -4.9 Ldh family oxidoreductase compare
MMP_RS02190 -1.8 -6.1 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05765 -1.8 -8.0 M42 family metallopeptidase compare
MMP_RS00320 -1.8 -3.7 class I SAM-dependent methyltransferase compare
MMP_RS06215 -1.8 -4.6 30S ribosomal protein S6e compare
MMP_RS05815 -1.7 -2.4 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05430 -1.7 -6.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS07390 -1.7 -3.1 cell division protein FtsZ compare
MMP_RS02170 -1.7 -9.6 CBS domain-containing protein compare
MMP_RS07710 -1.7 -8.5 cell division protein FtsZ compare
MMP_RS05245 -1.7 -10.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07955 -1.7 -5.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01915 -1.7 -12.5 DUF354 domain-containing protein compare
MMP_RS02165 -1.6 -10.0 tRNA-dihydrouridine synthase compare
MMP_RS01955 -1.6 -5.0 hypothetical protein compare
MMP_RS04710 -1.6 -2.7 hypothetical protein compare
MMP_RS01960 -1.6 -1.0 hypothetical protein compare
MMP_RS02800 -1.6 -5.7 nucleotidyltransferase domain-containing protein compare
MMP_RS03145 -1.6 -7.8 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00110 -1.5 -3.9 hypothetical protein compare
MMP_RS04875 -1.5 -6.4 energy-converting hydrogenase B subunit P compare
MMP_RS06930 -1.5 -10.9 MBL fold metallo-hydrolase compare
MMP_RS01905 -1.5 -10.5 glycosyltransferase compare
MMP_RS03250 -1.5 -4.1 MJ1244 family protein compare
MMP_RS01925 -1.5 -6.4 DUF1616 domain-containing protein compare
MMP_RS05505 -1.5 -11.1 class IV adenylate cyclase compare
MMP_RS03095 -1.5 -9.3 diphthine synthase compare
MMP_RS00050 -1.5 -8.0 AarF/UbiB family protein compare
MMP_RS03140 -1.4 -12.4 hypothetical protein compare
MMP_RS07720 -1.4 -11.0 4Fe-4S binding protein compare
MMP_RS01840 -1.4 -9.5 TIGR00289 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms