Experiment set4IT055 for Cupriavidus basilensis FW507-4G11

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
RR42_RS28290 -7.1 -2.8 DNA-binding protein compare
RR42_RS02705 -6.8 -1.2 Holliday junction DNA helicase RuvA compare
RR42_RS08085 -6.7 -2.3 hypothetical protein compare
RR42_RS27915 -6.5 -2.0 acyl-CoA synthetase compare
RR42_RS25785 -6.3 -1.9 TetR family transcriptional regulator compare
RR42_RS03080 -6.1 -2.1 recombinase RecA compare
RR42_RS01485 -6.1 -1.9 phosphonate transporter compare
RR42_RS10440 -5.9 -1.8 heat-shock protein compare
RR42_RS14985 -5.8 -1.0 30S ribosomal protein S21 compare
RR42_RS01385 -5.8 -2.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS07325 -5.6 -6.7 exodeoxyribonuclease III compare
RR42_RS15050 -5.6 -9.2 DNA polymerase I compare
RR42_RS34535 -5.6 -1.7 membrane protein compare
RR42_RS14365 -5.4 -1.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS04735 -5.4 -1.0 hypothetical protein compare
RR42_RS17375 -5.4 -0.9 hypothetical protein compare
RR42_RS05420 -5.3 -3.2 membrane protein compare
RR42_RS10415 -5.3 -0.9 hypothetical protein compare
RR42_RS07615 -5.3 -1.6 3-ketoacyl-ACP reductase compare
RR42_RS13435 -5.2 -10.0 polyphosphate kinase compare
RR42_RS17565 -5.1 -15.5 LysR family transcriptional regulator compare
RR42_RS04375 -5.1 -4.8 magnesium transporter compare
RR42_RS08330 -5.1 -0.9 hypothetical protein compare
RR42_RS02500 -5.0 -1.5 TetR family transcriptional regulator compare
RR42_RS26540 -5.0 -0.9 3-phosphoglycerate dehydrogenase compare
RR42_RS18850 -5.0 -1.9 preprotein translocase subunit TatC compare
RR42_RS01920 -4.9 -2.2 protoheme IX farnesyltransferase compare
RR42_RS08945 -4.9 -0.8 hypothetical protein compare
RR42_RS03035 -4.9 -0.8 membrane protein compare
RR42_RS17805 -4.8 -0.8 hypothetical protein compare
RR42_RS17610 -4.8 -15.0 malate dehydrogenase compare
RR42_RS32740 -4.8 -0.8 enoyl-CoA hydratase compare
RR42_RS14055 -4.8 -1.8 elongation factor 4 compare
RR42_RS05755 -4.7 -2.1 enoyl-CoA hydratase compare
RR42_RS16740 -4.6 -2.0 hypothetical protein compare
RR42_RS10150 -4.6 -1.1 hypothetical protein compare
RR42_RS08575 -4.5 -0.8 tail protein compare
RR42_RS17380 -4.5 -12.5 catalase compare
RR42_RS27700 -4.5 -1.1 hypothetical protein compare
RR42_RS17970 -4.5 -1.1 hypothetical protein compare
RR42_RS17880 -4.5 -0.8 hypothetical protein compare
RR42_RS02785 -4.4 -2.3 dimethyladenosine transferase compare
RR42_RS03085 -4.3 -0.8 RecX family transcriptional regulator compare
RR42_RS19005 -4.3 -3.7 3-dehydroquinate synthase compare
RR42_RS07610 -4.3 -5.5 acetyl-CoA acetyltransferase compare
RR42_RS17355 -4.3 -0.7 hypothetical protein compare
RR42_RS23690 -4.2 -1.8 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS05425 -4.2 -4.7 membrane protein compare
RR42_RS27320 -4.2 -1.0 ferredoxin compare
RR42_RS22030 -4.2 -2.2 hypothetical protein compare
RR42_RS28525 -4.2 -2.3 PadR family transcriptional regulator compare
RR42_RS35965 -4.1 -2.7 hypothetical protein compare
RR42_RS08025 -4.1 -1.0 phage Gp37Gp68 compare
RR42_RS12185 -4.1 -1.0 LysR family transcriptional regulator compare
RR42_RS30930 -4.1 -7.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS15525 -4.0 -0.7 hypothetical protein compare
RR42_RS19900 -3.9 -1.2 MerR family transcriptional regulator compare
RR42_RS19045 -3.9 -0.7 frataxin compare
RR42_RS18940 -3.9 -3.3 ABC transporter ATP-binding protein compare
RR42_RS01795 -3.9 -9.1 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS37435 -3.9 -3.3 elongation factor G compare
RR42_RS35900 -3.9 -8.3 hypothetical protein compare
RR42_RS25650 -3.9 -0.9 hypothetical protein compare
RR42_RS24510 -3.8 -0.9 hypothetical protein compare
RR42_RS19085 -3.8 -1.1 cytochrome C biogenesis protein ResB compare
RR42_RS04280 -3.8 -1.6 aldehyde dehydrogenase compare
RR42_RS13910 -3.8 -5.0 glutamate racemase compare
RR42_RS04015 -3.7 -0.9 RNA polymerase sigma factor compare
RR42_RS17560 -3.7 -2.7 Fur family transcriptional regulator compare
RR42_RS00715 -3.7 -1.3 ferritin compare
RR42_RS15090 -3.7 -4.6 DNA helicase compare
RR42_RS28315 -3.7 -4.2 GntR family transcriptional regulator compare
RR42_RS34210 -3.7 -2.1 hypothetical protein compare
RR42_RS36110 -3.7 -3.6 membrane protein compare
RR42_RS25455 -3.7 -0.9 acetyl-CoA acetyltransferase compare
RR42_RS34320 -3.7 -5.1 IclR family transcriptional regulator compare
RR42_RS33600 -3.6 -0.9 oxidoreductase compare
RR42_RS09060 -3.6 -1.5 glucose-6-phosphate isomerase compare
RR42_RS00645 -3.6 -2.5 allophanate hydrolase compare
RR42_RS21470 -3.6 -0.9 hypothetical protein compare
RR42_RS04320 -3.6 -5.1 cell division protein FtsK compare
RR42_RS20810 -3.6 -1.6 hypothetical protein compare
RR42_RS15770 -3.6 -4.4 hypothetical protein compare
RR42_RS35295 -3.5 -1.5 diguanylate cyclase compare
RR42_RS29335 -3.5 -1.4 integrase compare
RR42_RS22585 -3.5 -1.2 MarR family transcriptional regulator compare
RR42_RS36120 -3.5 -3.7 LysR family transcriptional regulator compare
RR42_RS10980 -3.5 -3.1 hydroxypyruvate isomerase compare
RR42_RS27055 -3.5 -6.5 membrane protein compare
RR42_RS04700 -3.4 -0.8 ribonuclease G compare
RR42_RS35220 -3.4 -1.4 peptide ABC transporter ATP-binding protein compare
RR42_RS20095 -3.4 -2.6 peroxiredoxin compare
RR42_RS00440 -3.4 -0.8 hypothetical protein compare
RR42_RS05810 -3.3 -1.3 RNA polymerase sigma factor compare
RR42_RS13905 -3.3 -4.2 fumarate hydratase compare
RR42_RS19485 -3.3 -0.8 general secretion pathway protein GspH compare
RR42_RS32590 -3.3 -1.1 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS02440 -3.2 -1.1 membrane protein compare
RR42_RS06875 -3.2 -1.3 hypothetical protein compare
RR42_RS03980 -3.2 -3.5 Fis family transcriptional regulator compare
RR42_RS03095 -3.2 -1.1 succinyl-CoA synthetase subunit beta compare
RR42_RS36450 -3.2 -0.8 acyl dehydratase compare
RR42_RS36350 -3.2 -2.6 D-amino acid oxidase compare
RR42_RS15800 -3.1 -3.5 aldo/keto reductase compare
RR42_RS32595 -3.1 -3.8 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS13515 -3.1 -4.7 membrane protein compare
RR42_RS14490 -3.1 -9.2 aconitate hydratase compare
RR42_RS06250 -3.0 -1.2 dihydrodipicolinate synthase compare
RR42_RS14360 -3.0 -0.7 tryptophan synthase subunit alpha compare
RR42_RS12860 -3.0 -1.2 pseudouridine synthase compare
RR42_RS07480 -3.0 -5.2 ADP-ribose pyrophosphatase compare
RR42_RS02250 -2.9 -2.2 GntR family transcriptional regulator compare
RR42_RS37240 -2.9 -0.7 hypothetical protein compare
RR42_RS25645 -2.9 -1.8 hypothetical protein compare
RR42_RS17390 -2.9 -3.4 ATP-dependent DNA helicase RecG compare
RR42_RS23230 -2.9 -1.8 glycerate kinase compare
RR42_RS19445 -2.9 -4.1 TetR family transcriptional regulator compare
RR42_RS16275 -2.8 -2.6 membrane protein compare
RR42_RS07110 -2.8 -1.5 hypothetical protein compare
RR42_RS19410 -2.8 -5.3 GntR family transcriptional regulator compare
RR42_RS06545 -2.8 -1.2 thioesterase compare
RR42_RS04300 -2.8 -2.1 nitrogen regulatory protein P-II 1 compare
RR42_RS18700 -2.8 -2.3 membrane protein compare
RR42_RS00900 -2.8 -2.3 2-hydroxychromene-2-carboxylate isomerase compare
RR42_RS12240 -2.8 -1.0 hypothetical protein compare
RR42_RS20680 -2.8 -3.2 membrane protein compare
RR42_RS19420 -2.8 -9.3 hypothetical protein compare
RR42_RS04810 -2.7 -1.6 glycine/betaine ABC transporter permease compare
RR42_RS04475 -2.7 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS15890 -2.7 -5.0 heme biosynthesis protein HemY compare
RR42_RS04145 -2.7 -0.9 peptidase A24 compare
RR42_RS26455 -2.7 -0.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS16335 -2.7 -1.1 hypothetical protein compare
RR42_RS07565 -2.6 -7.6 transcription accessory protein compare
RR42_RS11275 -2.6 -4.0 3-methylitaconate isomerase compare
RR42_RS21835 -2.6 -3.0 muconate cycloisomerase compare
RR42_RS15895 -2.6 -5.4 uroporphyrinogen III methyltransferase compare
RR42_RS32585 -2.5 -1.1 cytochrome C oxidase compare
RR42_RS03990 -2.5 -4.0 aspartate:proton symporter Glt (from data) compare
RR42_RS06485 -2.5 -6.2 chorismate synthase compare
RR42_RS18045 -2.5 -4.0 peroxiredoxin compare
RR42_RS21720 -2.5 -1.7 acetoin catabolism protein X compare
RR42_RS22890 -2.4 -4.3 TetR family transcriptional regulator compare
RR42_RS20285 -2.4 -3.5 amino acid ABC transporter ATP-binding protein compare
RR42_RS05890 -2.4 -5.1 glutamine-synthetase adenylyltransferase compare
RR42_RS26435 -2.4 -1.5 ferredoxin compare
RR42_RS11795 -2.4 -1.9 PEP synthetase regulatory protein compare
RR42_RS11985 -2.3 -2.4 glutathione ABC transporter permease compare
RR42_RS14080 -2.3 -5.1 RNA polymerase sigma factor RpoE compare
RR42_RS32000 -2.3 -3.1 3-oxosteroid 1-dehydrogenase compare
RR42_RS02385 -2.3 -1.8 hydrolase compare
RR42_RS18840 -2.3 -2.1 2-alkenal reductase compare
RR42_RS03985 -2.3 -4.8 histidine kinase compare
RR42_RS33255 -2.2 -1.8 protein-tyrosine phosphatase compare
RR42_RS26740 -2.2 -1.0 protein serine/threonine phosphatase compare
RR42_RS07605 -2.2 -4.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04310 -2.2 -2.5 DNA mismatch repair protein MutS compare
RR42_RS31505 -2.2 -1.5 hypothetical protein compare
RR42_RS25840 -2.1 -2.2 ArsR family transcriptional regulator compare
RR42_RS25200 -2.1 -2.5 TetR family transcriptional regulator compare
RR42_RS17235 -2.1 -4.8 poly(A) polymerase compare
RR42_RS05860 -2.1 -1.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS18855 -2.1 -2.4 preprotein translocase compare
RR42_RS17385 -2.1 -7.0 LysR family transcriptional regulator compare
RR42_RS32600 -2.1 -3.0 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS28545 -2.1 -3.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
RR42_RS29170 -2.1 -2.8 hypothetical protein compare
RR42_RS26985 -2.1 -1.7 hypothetical protein compare
RR42_RS04460 -2.1 -5.6 chorismate mutase compare
RR42_RS22710 -2.1 -1.6 short-chain dehydrogenase compare
RR42_RS27595 -2.1 -2.2 hypothetical protein compare
RR42_RS18425 -2.1 -0.7 hypothetical protein compare
RR42_RS17425 -2.0 -3.1 chemotaxis protein CheY compare
RR42_RS25830 -2.0 -2.7 cytochrome BD ubiquinol oxidase subunit II compare
RR42_RS11270 -2.0 -5.7 aconitate hydratase compare
RR42_RS06000 -2.0 -0.8 antibiotic biosynthesis monooxygenase compare
RR42_RS05500 -2.0 -0.7 preprotein translocase subunit SecG compare
RR42_RS12090 -2.0 -2.6 monooxygenase compare
RR42_RS01220 -2.0 -5.2 exodeoxyribonuclease III compare
RR42_RS14610 -2.0 -3.4 lactate permease compare
RR42_RS23080 -2.0 -2.1 LysR family transcriptional regulator compare
RR42_RS23120 -2.0 -1.9 hypothetical protein compare
RR42_RS18380 -2.0 -1.4 hypothetical protein compare
RR42_RS24520 -2.0 -1.6 hypothetical protein compare
RR42_RS01925 -2.0 -3.4 photosynthetic protein synthase I compare
RR42_RS31300 -2.0 -2.0 TetR family transcriptional regulator compare
RR42_RS15035 -2.0 -3.2 ZIP zinc transporter compare
RR42_RS18520 -2.0 -1.6 hypothetical protein compare
RR42_RS13025 -2.0 -2.4 hypothetical protein compare
RR42_RS33145 -1.9 -1.0 hypothetical protein compare
RR42_RS17055 -1.9 -3.4 LuxR family transcriptional regulator compare
RR42_RS00115 -1.9 -1.0 hypothetical protein compare
RR42_RS20210 -1.9 -1.7 16S rRNA methyltransferase compare
RR42_RS05620 -1.9 -1.4 esterase compare
RR42_RS16640 -1.9 -0.8 LysR family transcriptional regulator compare
RR42_RS04825 -1.9 -2.9 glycine/betaine ABC transporter ATP-binding protein compare
RR42_RS04980 -1.9 -0.9 hypothetical protein compare
RR42_RS11120 -1.9 -1.6 DNA-binding protein compare
RR42_RS05125 -1.9 -1.8 malonic semialdehyde reductase compare
RR42_RS06630 -1.9 -1.1 integration host factor subunit alpha compare


Specific Phenotypes

For 19 genes in this experiment