Experiment set4IT055 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Nisin from Lactococcus lactis 0.001 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +2.0 17.1 acetyltransferase compare
BBR_RS16605 +1.7 12.8 hypothetical protein compare
BBR_RS10770 +1.5 9.8 CrcB family protein compare
BBR_RS11500 +1.5 11.9 glycosyltransferase family 2 protein compare
BBR_RS14220 +1.4 9.5 phosphomannomutase compare
BBR_RS10765 +1.4 11.9 hypothetical protein compare
BBR_RS19760 +1.1 1.4 polysaccharide ABC transporter ATPase compare
BBR_RS13910 +1.1 1.4 arginine repressor compare
BBR_RS17905 +1.0 10.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS10720 +1.0 9.0 PDZ domain-containing protein compare
BBR_RS15555 +0.9 2.6 HAD family hydrolase compare
BBR_RS15730 +0.9 2.6 hypothetical protein compare
BBR_RS20930 +0.9 1.7 hypothetical protein compare
BBR_RS12910 +0.9 7.8 galactokinase compare
BBR_RS16670 +0.8 4.8 hypothetical protein compare
BBR_RS12720 +0.8 1.7 hypothetical protein compare
BBR_RS12030 +0.8 2.8 F0F1 ATP synthase subunit epsilon compare
BBR_RS10570 +0.8 4.3 hypothetical protein compare
BBR_RS11515 +0.8 6.7 ammonium transporter compare
BBR_RS18555 +0.8 5.2 NlpC/P60 family protein compare
BBR_RS18130 +0.8 5.9 glucokinase compare
BBR_RS18525 +0.8 3.3 hypothetical protein compare
BBR_RS19055 +0.7 1.2 ferredoxin family protein compare
BBR_RS13300 +0.7 0.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS17460 +0.7 3.9 TPM domain-containing protein compare
BBR_RS11485 +0.7 5.6 serine hydrolase compare
BBR_RS11975 +0.7 2.4 hypothetical protein compare
BBR_RS16810 +0.7 4.8 aldose 1-epimerase compare
BBR_RS16555 +0.6 0.5 DNA translocase FtsK compare
BBR_RS16535 +0.6 1.8 DUF3046 domain-containing protein compare
BBR_RS17480 +0.6 2.7 hypothetical protein compare
BBR_RS16105 +0.6 2.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
BBR_RS19800 +0.6 4.4 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS19165 +0.5 1.2 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS17880 +0.5 1.9 nucleotidyltransferase compare
BBR_RS20835 +0.5 2.5 hypothetical protein compare
BBR_RS15805 +0.5 2.2 prolipoprotein diacylglyceryl transferase compare
BBR_RS14585 +0.5 1.6 hypothetical protein compare
BBR_RS19265 +0.5 3.7 pyrrolidone-carboxylate peptidase compare
BBR_RS16685 +0.5 1.2 alcohol dehydrogenase compare
BBR_RS12770 +0.5 1.6 hypothetical protein compare
BBR_RS19350 +0.5 1.7 tRNA-Val compare
BBR_RS15650 +0.5 0.9 Holliday junction resolvase compare
BBR_RS20170 +0.5 4.1 LacI family transcriptional regulator compare
BBR_RS17005 +0.5 2.9 methyltransferase domain-containing protein compare
BBR_RS17190 +0.5 1.2 transcriptional regulator compare
BBR_RS18560 +0.5 3.4 hypothetical protein compare
BBR_RS11520 +0.5 3.3 P-II family nitrogen regulator compare
BBR_RS15570 +0.5 2.6 branched-chain amino acid transport system II carrier protein compare
BBR_RS14680 +0.5 2.4 Fic family protein compare
BBR_RS20695 +0.5 1.3 hypothetical protein compare
BBR_RS15030 +0.5 2.0 mRNA interferase PemK compare
BBR_RS16620 +0.5 1.7 DUF3159 domain-containing protein compare
BBR_RS16195 +0.4 1.7 hypothetical protein compare
BBR_RS16650 +0.4 2.4 ABC transporter substrate-binding protein compare
BBR_RS14380 +0.4 3.3 phosphate acetyltransferase compare
BBR_RS14015 +0.4 1.3 hypothetical protein compare
BBR_RS20430 +0.4 1.0 hypothetical protein compare
BBR_RS20175 +0.4 3.7 LacI family transcriptional regulator compare
BBR_RS20810 +0.4 1.4 pirin compare
BBR_RS18485 +0.4 1.4 IS30 family transposase compare
BBR_RS15495 +0.4 2.0 ABC transporter ATP-binding protein compare
BBR_RS15360 +0.4 1.3 hypothetical protein compare
BBR_RS10555 +0.4 0.5 DUF3073 domain-containing protein compare
BBR_RS16275 +0.4 0.7 leucine--tRNA ligase compare
BBR_RS12295 +0.4 0.6 RNA-binding protein compare
BBR_RS17065 +0.4 1.9 aldo/keto reductase compare
BBR_RS16405 +0.4 2.0 peptidylprolyl isomerase compare
BBR_RS13380 +0.4 2.7 amidophosphoribosyltransferase compare
BBR_RS20240 +0.4 3.5 hypothetical protein compare
BBR_RS15325 +0.4 1.4 hypothetical protein compare
BBR_RS10655 +0.4 2.5 hypothetical protein compare
BBR_RS12515 +0.4 2.8 LacI family transcriptional regulator compare
BBR_RS20090 +0.4 2.7 DUF4235 domain-containing protein compare
BBR_RS13005 +0.4 3.1 aminopeptidase N compare
BBR_RS15150 +0.4 2.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS13235 +0.4 1.8 hypothetical protein compare
BBR_RS13800 +0.4 1.1 hypothetical protein compare
BBR_RS14010 +0.4 1.8 TlyA family rRNA (cytidine-2'-O)-methyltransferase compare
BBR_RS15865 +0.3 1.3 GNAT family N-acetyltransferase compare
BBR_RS15595 +0.3 2.0 fructosamine kinase compare
BBR_RS16295 +0.3 1.3 DNA methyltransferase compare
BBR_RS13740 +0.3 1.3 DUF3052 domain-containing protein compare
BBR_RS18640 +0.3 1.4 PspC domain-containing protein compare
BBR_RS12855 +0.3 1.9 glycine cleavage system protein H compare
BBR_RS20545 +0.3 1.7 hypothetical protein compare
BBR_RS17115 +0.3 1.7 aldo/keto reductase compare
BBR_RS15420 +0.3 2.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
BBR_RS20855 +0.3 0.8 hypothetical protein compare
BBR_RS13855 +0.3 1.8 ABC transporter ATP-binding protein compare
BBR_RS17415 +0.3 1.0 hypothetical protein compare
BBR_RS17030 +0.3 1.4 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS12830 +0.3 1.9 G5 domain-containing protein compare
BBR_RS19750 +0.3 2.9 LTA synthase family protein compare
BBR_RS14635 +0.3 2.0 amino acid ABC transporter ATP-binding protein compare
BBR_RS15550 +0.3 1.0 L-lactate dehydrogenase compare
BBR_RS14670 +0.3 2.1 excinuclease ABC subunit UvrA compare
BBR_RS20850 +0.3 0.3 resolvase compare
BBR_RS19290 +0.3 1.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS18185 +0.3 1.0 hypoxanthine phosphoribosyltransferase compare
BBR_RS14715 +0.3 0.5 XRE family transcriptional regulator compare
BBR_RS18160 +0.3 2.1 DUF3180 domain-containing protein compare
BBR_RS18110 +0.3 1.7 peptide deformylase compare
BBR_RS13305 +0.3 1.3 transcriptional repressor compare
BBR_RS19745 +0.3 2.6 LTA synthase family protein compare
BBR_RS12805 +0.3 0.5 hypothetical protein compare
BBR_RS20230 +0.3 2.6 hypothetical protein compare
BBR_RS14955 +0.3 1.8 hypothetical protein compare
BBR_RS14035 +0.3 1.5 HAD family phosphatase compare
BBR_RS20525 +0.3 1.1 DUF3800 domain-containing protein compare
BBR_RS14170 +0.3 1.7 hemolysin III compare
BBR_RS16175 +0.3 0.8 DNA integration/recombination/inversion protein compare
BBR_RS16660 +0.3 2.1 ABC transporter ATP-binding protein compare
BBR_RS17070 +0.3 2.0 hypothetical protein compare
BBR_RS11175 +0.3 2.1 penicillin-binding protein compare
BBR_RS18135 +0.3 1.2 hypothetical protein compare
BBR_RS18985 +0.3 2.7 4-alpha-glucanotransferase compare
BBR_RS16015 +0.3 1.3 DUF2089 domain-containing protein compare
BBR_RS14615 +0.3 1.4 histidine kinase compare
BBR_RS13110 +0.3 1.8 type III pantothenate kinase compare
BBR_RS13280 +0.3 1.8 ABC transporter permease compare
BBR_RS21145 +0.3 1.4 ISL3 family transposase compare
BBR_RS18490 +0.3 2.3 sugar ABC transporter substrate-binding protein compare
BBR_RS16885 +0.3 2.1 carbohydrate kinase compare
BBR_RS14990 +0.3 1.0 DUF4418 domain-containing protein compare
BBR_RS17660 +0.3 1.0 hypothetical protein compare
BBR_RS17845 +0.3 1.3 ECF transporter S component compare
BBR_RS12480 +0.3 1.2 arabinose-proton symporter compare
BBR_RS20325 +0.3 1.9 PTS lactose transporter subunit IIB compare
BBR_RS12580 +0.3 1.2 transposase compare
BBR_RS17120 +0.3 1.6 DUF4186 domain-containing protein compare
BBR_RS16060 +0.3 0.8 hypothetical protein compare
BBR_RS15255 +0.3 2.4 glutamate synthase large subunit compare
BBR_RS21095 +0.3 0.9 chemotaxis protein compare
BBR_RS11910 +0.3 1.2 hypothetical protein compare
BBR_RS15385 +0.3 1.0 hypothetical protein compare
BBR_RS18635 +0.3 1.0 PspC domain-containing protein compare
BBR_RS19690 +0.3 2.2 glycerophosphodiester phosphodiesterase compare
BBR_RS20655 +0.3 1.2 hypothetical protein compare
BBR_RS20130 +0.3 2.3 threonine ammonia-lyase compare
BBR_RS17990 +0.3 1.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS15850 +0.3 0.8 ASCH domain-containing protein compare
BBR_RS15130 +0.3 0.4 metal-sulfur cluster assembly factor compare
BBR_RS17370 +0.3 1.3 ABC transporter substrate-binding protein compare
BBR_RS12985 +0.3 1.4 MFS transporter compare
BBR_RS20145 +0.3 2.3 alpha-1,4-glucosidase compare
BBR_RS11300 +0.3 1.6 hypothetical protein compare
BBR_RS12750 +0.3 1.3 hypothetical protein compare
BBR_RS10295 +0.3 1.9 hypothetical protein compare
BBR_RS15715 +0.3 1.3 Cof-type HAD-IIB family hydrolase compare
BBR_RS14060 +0.2 1.4 ABC transporter compare
BBR_RS16380 +0.2 1.1 hypothetical protein compare
BBR_RS20075 +0.2 2.0 LacI family transcriptional regulator compare
BBR_RS14300 +0.2 1.1 NUDIX hydrolase compare
BBR_RS17000 +0.2 1.7 GTPase HflX compare
BBR_RS18550 +0.2 1.7 universal stress protein compare
BBR_RS20125 +0.2 1.9 SIR2 family protein compare
BBR_RS14590 +0.2 1.4 pyridoxine kinase compare
BBR_RS14660 +0.2 0.5 transcriptional regulator compare
BBR_RS17840 +0.2 1.3 energy-coupling factor transporter transmembrane protein EcfT compare
BBR_RS14970 +0.2 1.1 transcriptional regulator compare
BBR_RS19650 +0.2 2.0 NUDIX hydrolase compare
BBR_RS15340 +0.2 0.6 hypothetical protein compare
BBR_RS16145 +0.2 1.0 hypothetical protein compare
BBR_RS17900 +0.2 1.7 glutamate--cysteine ligase compare
BBR_RS15470 +0.2 1.2 LysR family transcriptional regulator compare
BBR_RS17260 +0.2 1.4 Sucrose permease compare
BBR_RS13355 +0.2 1.3 ABC transporter substrate-binding protein compare
BBR_RS12470 +0.2 1.8 long-chain fatty acid--CoA ligase compare
BBR_RS14365 +0.2 1.2 hypothetical protein compare
BBR_RS15220 +0.2 1.3 trimeric intracellular cation channel family protein compare
BBR_RS17110 +0.2 1.5 oleate hydratase compare
BBR_RS21070 +0.2 1.0 DNA-binding protein compare
BBR_RS14565 +0.2 1.5 DNA-processing protein DprA compare
BBR_RS13455 +0.2 0.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS16030 +0.2 1.1 hypothetical protein compare
BBR_RS17365 +0.2 0.9 ABC transporter permease compare
BBR_RS12340 +0.2 0.7 Arc family DNA-binding protein compare
BBR_RS20680 +0.2 1.1 hypothetical protein compare
BBR_RS20320 +0.2 1.9 PTS ascorbate transporter subunit IIC compare
BBR_RS12040 +0.2 1.4 peptidyl-prolyl cis-trans isomerase compare
BBR_RS13685 +0.2 1.2 DUF4143 domain-containing protein compare
BBR_RS18025 +0.2 1.4 AmmeMemoRadiSam system radical SAM enzyme compare
BBR_RS17875 +0.2 1.3 glucan 1,3-beta-glucosidase compare
BBR_RS15000 +0.2 1.1 ABC transporter ATP-binding protein compare
BBR_RS17670 +0.2 1.1 transposase compare
BBR_RS20200 +0.2 2.0 alpha-galactosidase compare
BBR_RS15515 +0.2 1.5 excinuclease ABC subunit UvrC compare
BBR_RS21010 +0.2 0.9 hypothetical protein compare
BBR_RS13195 +0.2 1.3 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS13100 +0.2 1.5 sugar ABC transporter substrate-binding protein compare
BBR_RS19515 +0.2 1.7 ABC transporter ATP-binding protein compare
BBR_RS12180 +0.2 1.8 DUF2974 domain-containing protein compare
BBR_RS12675 +0.2 1.4 transposase compare
BBR_RS11640 +0.2 0.2 hypothetical protein compare
BBR_RS14505 +0.2 0.7 hypothetical protein compare
BBR_RS16505 +0.2 0.9 hypothetical protein compare
BBR_RS17035 +0.2 1.1 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS13425 +0.2 0.9 hypothetical protein compare
BBR_RS13215 +0.2 0.4 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nisin from Lactococcus lactis in Bifidobacterium breve UCC2003

For stress Nisin from Lactococcus lactis across organisms