Experiment set4IT054 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Vanillin 1.25 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.7 -2.5 peroxidase compare
AO353_24535 -2.9 -3.8 hypothetical protein compare
AO353_14940 -2.3 -5.1 malate:quinone oxidoreductase compare
AO353_12500 -2.3 -2.6 shikimate kinase compare
AO353_00825 -2.2 -5.0 porin compare
AO353_03795 -2.2 -5.2 fumarate hydratase compare
AO353_14220 -2.1 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_07355 -2.0 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_18540 -2.0 -2.8 pseudouridine synthase compare
AO353_10930 -1.9 -7.9 DNA polymerase I compare
AO353_19770 -1.9 -2.9 peptidase compare
AO353_02250 -1.8 -3.3 chorismate synthase compare
AO353_16805 -1.8 -6.5 recombinase RecA compare
AO353_03580 -1.8 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_04355 -1.8 -2.3 homoserine dehydrogenase compare
AO353_09315 -1.8 -9.5 LysR family transcriptional regulator compare
AO353_09000 -1.7 -5.3 argininosuccinate lyase compare
AO353_15900 -1.7 -2.7 GTP-binding protein compare
AO353_00650 -1.7 -2.4 cytochrome biogenesis protein compare
AO353_12105 -1.7 -6.8 peptidase S41 compare
AO353_21625 -1.7 -2.9 Fe/S biogenesis protein NfuA compare
AO353_15185 -1.6 -5.2 ATPase compare
AO353_12650 -1.6 -2.1 hypothetical protein compare
AO353_27500 -1.6 -2.6 hypothetical protein compare
AO353_09135 -1.6 -2.1 cytochrome C compare
AO353_14775 -1.5 -6.0 hypothetical protein compare
AO353_00495 -1.5 -2.3 DNA topoisomerase I compare
AO353_09040 -1.5 -2.4 diaminopimelate epimerase compare
AO353_16530 -1.5 -2.3 ribonuclease HII compare
AO353_11730 -1.5 -8.0 glutamate--cysteine ligase compare
AO353_11165 -1.5 -8.5 hypothetical protein compare
AO353_03615 -1.5 -3.5 cold-shock protein compare
AO353_22645 -1.5 -2.3 hypothetical protein compare
AO353_12115 -1.5 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13100 -1.5 -2.3 GTPase RsgA compare
AO353_12090 -1.4 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05150 -1.4 -4.7 ABC transporter ATP-binding protein compare
AO353_13225 -1.4 -2.8 50S ribosomal protein L9 compare
AO353_13640 -1.3 -3.9 histidine kinase compare
AO353_13160 -1.3 -2.1 membrane protease HflC compare
AO353_05145 -1.3 -5.1 ABC transporter permease compare
AO353_04175 -1.3 -3.9 glycerol uptake facilitator GlpF compare
AO353_05135 -1.3 -7.0 toluene tolerance protein compare
AO353_16940 -1.3 -5.0 deoxycytidine triphosphate deaminase compare
AO353_09890 -1.3 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_27650 -1.2 -3.9 cell division protein FtsK compare
AO353_08880 -1.2 -2.2 exopolyphosphatase compare
AO353_06850 -1.2 -4.1 MFS transporter compare
AO353_15250 -1.2 -3.2 cytochrome B compare
AO353_24740 -1.2 -2.9 hypothetical protein compare
AO353_06045 -1.2 -5.3 exodeoxyribonuclease V subunit beta compare
AO353_20175 -1.2 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_07075 -1.2 -4.2 elongation factor Tu compare
AO353_02940 -1.2 -2.7 DNA-binding protein compare
AO353_14115 -1.1 -5.0 gamma-glutamyl kinase compare
AO353_00330 -1.1 -5.9 hypothetical protein compare
AO353_07155 -1.1 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_05880 -1.1 -2.3 plasmid stabilization protein compare
AO353_21645 -1.1 -2.6 cobalt transporter compare
AO353_06415 -1.1 -3.3 hypothetical protein compare
AO353_09320 -1.1 -6.6 ATP-dependent DNA helicase RecG compare
AO353_14420 -1.1 -3.4 molecular chaperone DnaK compare
AO353_09050 -1.1 -3.2 recombinase XerC compare
AO353_09905 -1.1 -6.0 phosphate-binding protein compare
AO353_07315 -1.1 -2.1 rRNA methyltransferase compare
AO353_03585 -1.1 -1.9 ATP-dependent DNA helicase RuvA compare
AO353_06495 -1.1 -3.3 gamma-glutamyl phosphate reductase compare
AO353_19145 -1.0 -3.6 protease HtpX compare
AO353_10670 -1.0 -4.9 shikimate dehydrogenase compare
AO353_09240 -1.0 -2.2 acetylglutamate kinase compare
AO353_10455 -1.0 -1.4 tRNA modification GTPase MnmE compare
AO353_00620 -1.0 -2.2 cytochrome C oxidase Cbb3 compare
AO353_04220 -1.0 -4.3 chemotaxis protein CheY compare
AO353_06480 -1.0 -2.1 50S rRNA methyltransferase compare
AO353_26045 -1.0 -2.0 hypothetical protein compare
AO353_02600 -1.0 -1.9 alpha-ribazole phosphatase compare
AO353_02190 -1.0 -6.7 hypothetical protein compare
AO353_06050 -1.0 -4.4 exodeoxyribonuclease V subunit gamma compare
AO353_19605 -1.0 -2.2 hypothetical protein compare
AO353_01685 -1.0 -1.7 hypothetical protein compare
AO353_00635 -1.0 -2.2 hypothetical protein compare
AO353_05535 -1.0 -2.2 tRNA-Thr compare
AO353_03360 -1.0 -5.1 glucose-6-phosphate dehydrogenase compare
AO353_03420 -1.0 -3.2 phosphogluconate dehydratase compare
AO353_01410 -1.0 -2.5 ribonuclease E compare
AO353_07875 -1.0 -2.8 hypothetical protein compare
AO353_20170 -1.0 -3.6 trigger factor compare
AO353_23720 -1.0 -3.0 BatB protein compare
AO353_07325 -0.9 -1.3 diadenosine tetraphosphatase compare
AO353_21400 -0.9 -1.8 conjugal transfer protein TraR compare
AO353_26550 -0.9 -1.3 hypothetical protein compare
AO353_11770 -0.9 -1.5 molecular chaperone Hsp33 compare
AO353_27935 -0.9 -2.6 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_08115 -0.9 -4.2 energy transducer TonB compare
AO353_03710 -0.9 -1.8 formyltetrahydrofolate deformylase compare
AO353_22735 -0.9 -2.5 hypothetical protein compare
AO353_26935 -0.9 -2.1 LysR family transcriptional regulator compare
AO353_08165 -0.9 -2.2 pyrroline-5-carboxylate reductase compare
AO353_05550 -0.9 -4.1 pseudouridine synthase compare
AO353_05140 -0.9 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_02070 -0.9 -4.2 prephenate dehydratase compare
AO353_08110 -0.9 -3.9 glutathione synthetase compare
AO353_10055 -0.9 -6.5 DNA helicase II compare
AO353_05690 -0.9 -2.6 SsrA-binding protein compare
AO353_10435 -0.9 -5.7 chromosome partitioning protein compare
AO353_19090 -0.9 -1.7 MarR family transcriptional regulator compare
AO353_21440 -0.9 -2.3 hypothetical protein compare
AO353_24340 -0.9 -1.1 TetR family transcriptional regulator compare
AO353_28165 -0.9 -2.9 ABC transporter substrate-binding protein compare
AO353_13200 -0.9 -5.8 exoribonuclease R compare
AO353_12460 -0.9 -4.6 malate dehydrogenase compare
AO353_20185 -0.9 -3.7 DNA-binding protein compare
AO353_12130 -0.9 -3.7 preprotein translocase subunit SecB compare
AO353_08265 -0.8 -3.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_24190 -0.8 -2.4 hypothetical protein compare
AO353_10945 -0.8 -2.1 cytochrome C compare
AO353_09345 -0.8 -1.5 hypothetical protein compare
AO353_28815 -0.8 -1.5 hypothetical protein compare
AO353_27695 -0.8 -4.2 isocitrate dehydrogenase compare
AO353_12345 -0.8 -1.4 twin-arginine protein translocation system subunit TatC compare
AO353_25700 -0.8 -1.9 hypothetical protein compare
AO353_18745 -0.8 -1.8 flagellar biosynthesis protein flip compare
AO353_14495 -0.8 -5.1 acetolactate synthase 3 catalytic subunit compare
AO353_06585 -0.8 -3.9 hypothetical protein compare
AO353_12915 -0.8 -4.3 carbamoyltransferase compare
AO353_12930 -0.8 -2.2 GlcNAc-PI de-N-acetylase compare
AO353_00515 -0.8 -2.0 hypothetical protein compare
AO353_23875 -0.8 -2.8 ketosteroid isomerase compare
AO353_07940 -0.8 -3.1 hypothetical protein compare
AO353_07515 -0.8 -1.3 transporter compare
AO353_14500 -0.8 -3.5 acetolactate synthase 3 regulatory subunit compare
AO353_12565 -0.8 -2.1 type II secretion system protein GspH compare
AO353_04500 -0.8 -1.6 DNA repair protein RecO compare
AO353_01190 -0.8 -1.5 hypothetical protein compare
AO353_14440 -0.7 -3.0 ABC transporter substrate-binding protein compare
AO353_10725 -0.7 -1.0 dodecin flavoprotein compare
AO353_28930 -0.7 -1.2 hypothetical protein compare
AO353_23620 -0.7 -1.1 hypothetical protein compare
AO353_18890 -0.7 -2.6 cytochrome C compare
AO353_12535 -0.7 -1.7 hypothetical protein compare
AO353_15455 -0.7 -5.7 cytochrome o ubiquinol oxidase subunit I compare
AO353_25450 -0.7 -1.4 cyanate hydratase compare
AO353_26390 -0.7 -1.8 glyoxalase compare
AO353_27000 -0.7 -1.3 hypothetical protein compare
AO353_10430 -0.7 -2.1 chromosome partitioning protein ParB compare
AO353_11750 -0.7 -1.7 ATPase compare
AO353_28320 -0.7 -1.7 aminopeptidase compare
AO353_09900 -0.7 -4.9 phosphate ABC transporter permease compare
AO353_08685 -0.7 -3.8 N-acetylglutamate synthase compare
AO353_13925 -0.7 -1.7 XRE family transcriptional regulator compare
AO353_05625 -0.7 -0.9 transcription elongation factor GreA compare
AO353_15450 -0.7 -5.0 ubiquinol oxidase subunit II compare
AO353_17675 -0.7 -2.9 hypothetical protein compare
AO353_21430 -0.7 -1.7 hypothetical protein compare
AO353_12935 -0.7 -2.1 glycosyltransferase compare
AO353_00185 -0.7 -1.0 phage tail protein compare
AO353_09250 -0.7 -1.8 exodeoxyribonuclease III compare
AO353_27710 -0.7 -1.1 DNA repair protein compare
AO353_18170 -0.7 -3.7 aspartyl beta-hydroxylase compare
AO353_19565 -0.7 -2.1 vanillate O-demethylase oxidoreductase VanB compare
AO353_21640 -0.7 -1.7 cobalt transporter compare
AO353_24275 -0.7 -1.4 transcriptional regulator compare
AO353_03715 -0.7 -1.3 H-NS histone compare
AO353_10950 -0.7 -4.4 thiol:disulfide interchange protein compare
AO353_27680 -0.7 -3.1 ATP-dependent Clp protease adaptor ClpS compare
AO353_22810 -0.7 -0.9 hypothetical protein compare
AO353_15725 -0.7 -2.3 hypothetical protein compare
AO353_03520 -0.7 -1.8 hypothetical protein compare
AO353_22475 -0.7 -2.1 alkaline phosphatase compare
AO353_03815 -0.6 -0.8 heme utilization protein compare
AO353_27135 -0.6 -2.1 hypothetical protein compare
AO353_17540 -0.6 -1.8 helicase compare
AO353_13575 -0.6 -1.5 hypothetical protein compare
AO353_19280 -0.6 -1.2 hypothetical protein compare
AO353_03670 -0.6 -2.4 ornithine acetyltransferase compare
AO353_20565 -0.6 -0.8 tRNA-Ala compare
AO353_17365 -0.6 -1.7 hypothetical protein compare
AO353_13685 -0.6 -2.1 3-dehydroquinate dehydratase compare
AO353_16810 -0.6 -1.8 recombinase RecX compare
AO353_06325 -0.6 -2.2 hypothetical protein compare
AO353_23495 -0.6 -1.3 SAM-dependent methyltransferase compare
AO353_10500 -0.6 -2.1 acetylornithine aminotransferase compare
AO353_28780 -0.6 -2.4 hypothetical protein compare
AO353_12945 -0.6 -3.5 toluene tolerance protein compare
AO353_28200 -0.6 -1.8 ribosomal protein S3AE compare
AO353_03275 -0.6 -1.4 LysR family transcriptional regulator compare
AO353_04565 -0.6 -2.7 nucleoid-associated protein compare
AO353_09460 -0.6 -2.3 hypothetical protein compare
AO353_20800 -0.6 -0.9 hypothetical protein compare
AO353_22520 -0.6 -1.2 hypothetical protein compare
AO353_08015 -0.6 -3.0 5,10-methylenetetrahydrofolate reductase compare
AO353_09720 -0.6 -1.1 hypothetical protein compare
AO353_04520 -0.6 -2.6 elongation factor 4 compare
AO353_09860 -0.6 -4.1 histidine kinase compare
AO353_21540 -0.6 -1.4 type VI secretion protein compare
AO353_10040 -0.6 -3.6 transcriptional regulator compare
AO353_05415 -0.6 -1.0 hypothetical protein compare
AO353_09895 -0.6 -3.4 phosphate ABC transporter permease compare
AO353_25160 -0.6 -1.7 ABC transporter substrate-binding protein compare
AO353_15905 -0.6 -3.0 outer membrane protein assembly factor BamB compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress Vanillin across organisms