Experiment set4IT054 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Cephalothin sodium salt 2.5 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2939 -2.1 -5.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3833 -1.9 -7.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1462 -1.9 -11.8 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3246 -1.9 -4.4 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_3168 -1.9 -3.1 AmpG permease compare
Pf1N1B4_769 -1.8 -6.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3906 -1.8 -4.8 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4030 -1.8 -3.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_3093 -1.8 -2.2 Outer membrane protein H precursor compare
Pf1N1B4_2021 -1.8 -2.2 hypothetical protein compare
Pf1N1B4_2695 -1.7 -2.2 Rare lipoprotein A precursor compare
Pf1N1B4_683 -1.7 -4.1 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1568 -1.7 -3.9 Twin-arginine translocation protein TatB compare
Pf1N1B4_430 -1.6 -2.7 hypothetical protein compare
Pf1N1B4_2106 -1.6 -2.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_5224 -1.6 -3.1 tRNA-Arg-CCT compare
Pf1N1B4_4038 -1.6 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_629 -1.6 -3.2 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_1335 -1.6 -5.6 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_1307 -1.6 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2209 -1.6 -7.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4931 -1.5 -2.3 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_2621 -1.5 -1.4 PspA/IM30 family protein compare
Pf1N1B4_2005 -1.5 -2.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_58 -1.5 -5.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4039 -1.5 -5.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2874 -1.5 -2.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4028 -1.5 -3.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_823 -1.4 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1234 -1.4 -3.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4317 -1.4 -1.9 DNA/RNA non-specific endonuclease compare
Pf1N1B4_3985 -1.4 -2.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_2435 -1.4 -3.3 hypothetical protein compare
Pf1N1B4_4004 -1.4 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3143 -1.4 -2.6 RecA protein compare
Pf1N1B4_1891 -1.4 -1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_1336 -1.4 -2.0 Putative multicopper oxidases compare
Pf1N1B4_4051 -1.3 -3.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_5720 -1.3 -2.4 hypothetical protein compare
Pf1N1B4_4612 -1.3 -2.3 FIG00954117: hypothetical protein compare
Pf1N1B4_652 -1.3 -7.3 Sensory box histidine kinase compare
Pf1N1B4_5659 -1.3 -8.2 NfuA Fe-S protein maturation compare
Pf1N1B4_175 -1.3 -1.4 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1570 -1.3 -3.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_1105 -1.2 -2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4897 -1.2 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_2917 -1.2 -5.6 FIG140336: TPR domain protein compare
Pf1N1B4_886 -1.2 -2.0 FIG137478: Hypothetical protein compare
Pf1N1B4_339 -1.2 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2352 -1.2 -4.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_4506 -1.2 -2.5 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_350 -1.2 -5.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_875 -1.2 -2.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1619 -1.1 -6.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_240 -1.1 -1.6 Transcriptional regulators compare
Pf1N1B4_5991 -1.1 -1.9 Transcriptional regulator, AraC family compare
Pf1N1B4_1052 -1.1 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3656 -1.1 -1.3 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_1837 -1.1 -1.9 Osmotically inducible protein C compare
Pf1N1B4_2885 -1.1 -4.1 Paraquat-inducible protein A compare
Pf1N1B4_3768 -1.1 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2114 -1.0 -4.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_255 -1.0 -3.4 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_381 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_3685 -1.0 -3.1 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_962 -1.0 -6.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_1545 -1.0 -5.6 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_34 -1.0 -1.8 Xanthine permease compare
Pf1N1B4_1116 -1.0 -6.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_2856 -1.0 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1328 -1.0 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3647 -1.0 -6.1 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_1115 -1.0 -5.8 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1830 -1.0 -5.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3869 -1.0 -6.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_2085 -1.0 -1.8 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_5133 -1.0 -2.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1511 -1.0 -1.5 FIG027190: Putative transmembrane protein compare
Pf1N1B4_3468 -1.0 -1.4 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2912 -0.9 -1.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1906 -0.9 -2.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_5047 -0.9 -3.2 Integral membrane protein TerC compare
Pf1N1B4_4436 -0.9 -2.1 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4481 -0.9 -2.0 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_1544 -0.9 -4.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5219 -0.9 -1.8 tRNA-Gly-CCC compare
Pf1N1B4_3350 -0.9 -1.7 FIG00954807: hypothetical protein compare
Pf1N1B4_1180 -0.9 -1.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2884 -0.9 -3.2 Paraquat-inducible protein A compare
Pf1N1B4_327 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_2823 -0.9 -1.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5957 -0.9 -1.8 Arsenical resistance operon repressor compare
Pf1N1B4_3870 -0.9 -7.1 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_2335 -0.9 -2.8 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_5649 -0.9 -1.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_236 -0.9 -1.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_2886 -0.9 -5.9 Paraquat-inducible protein B compare
Pf1N1B4_4627 -0.9 -1.9 FIG00957600: hypothetical protein compare
Pf1N1B4_3025 -0.9 -2.6 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_4035 -0.9 -1.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3372 -0.9 -2.1 FIG00962464: hypothetical protein compare
Pf1N1B4_3443 -0.9 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3935 -0.9 -1.5 Major facilitator family transporter compare
Pf1N1B4_5737 -0.9 -2.2 Nitrate/nitrite transporter compare
Pf1N1B4_4979 -0.9 -1.9 Transcriptional regulator, AsnC family compare
Pf1N1B4_2075 -0.9 -2.0 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_4921 -0.9 -1.9 Haloacid dehalogenase, type II compare
Pf1N1B4_961 -0.9 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_4613 -0.9 -2.3 FIG00953934: hypothetical protein compare
Pf1N1B4_2105 -0.9 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5799 -0.9 -2.2 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_3027 -0.9 -3.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_2507 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_2035 -0.9 -3.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4544 -0.9 -1.3 Uncharacterized protein ImpA compare
Pf1N1B4_4549 -0.9 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_1504 -0.8 -1.5 Acyl carrier protein compare
Pf1N1B4_4205 -0.8 -2.3 Probable signal peptide protein compare
Pf1N1B4_2721 -0.8 -5.1 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_2493 -0.8 -1.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_1781 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_1566 -0.8 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3883 -0.8 -3.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_3020 -0.8 -3.0 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_4554 -0.8 -2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_960 -0.8 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4765 -0.8 -1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_835 -0.8 -1.7 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_3729 -0.8 -1.5 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_4517 -0.8 -1.9 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_4040 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_756 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_1236 -0.8 -3.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4849 -0.8 -1.6 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2227 -0.8 -1.4 FIG019278: hypothetical protein compare
Pf1N1B4_6030 -0.8 -2.3 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_114 -0.8 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_617 -0.8 -1.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_2037 -0.8 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4320 -0.8 -2.0 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_3802 -0.8 -1.4 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_2709 -0.8 -2.4 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_2384 -0.8 -5.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1661 -0.8 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_5838 -0.8 -1.6 FIG00956589: hypothetical protein compare
Pf1N1B4_1569 -0.8 -5.7 Twin-arginine translocation protein TatC compare
Pf1N1B4_4540 -0.8 -1.7 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_3871 -0.8 -5.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5923 -0.8 -1.5 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_5860 -0.8 -1.5 Two-component response regulator compare
Pf1N1B4_437 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_1150 -0.8 -2.2 AmpE protein compare
Pf1N1B4_799 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_2526 -0.8 -5.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3595 -0.8 -1.3 Flagellin protein FlaG compare
Pf1N1B4_2360 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_4140 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_2219 -0.7 -3.2 ChaC-related protein compare
Pf1N1B4_4362 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_3386 -0.7 -2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_4156 -0.7 -1.6 putative secreted protein compare
Pf1N1B4_2924 -0.7 -1.8 FIG00955589: hypothetical protein compare
Pf1N1B4_4477 -0.7 -1.4 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_3445 -0.7 -1.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5257 -0.7 -3.3 hypothetical protein compare
Pf1N1B4_2176 -0.7 -1.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_909 -0.7 -1.7 Ketosteroid isomerase-related protein compare
Pf1N1B4_4455 -0.7 -1.4 FIG00953528: hypothetical protein compare
Pf1N1B4_1540 -0.7 -1.9 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_219 -0.7 -1.8 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_4029 -0.7 -1.3 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_970 -0.7 -5.2 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_5059 -0.7 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_904 -0.7 -1.3 DNA-binding protein HU-beta compare
Pf1N1B4_1593 -0.7 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2171 -0.7 -1.7 Tyrosine recombinase XerC compare
Pf1N1B4_4972 -0.7 -1.4 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_855 -0.7 -1.3 FIG021952: putative membrane protein compare
Pf1N1B4_3865 -0.7 -1.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_5652 -0.7 -1.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4828 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_3667 -0.7 -3.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_4116 -0.7 -1.8 FIG011065: hypothetical protein compare
Pf1N1B4_2295 -0.7 -2.8 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_4107 -0.7 -1.5 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_2047 -0.7 -2.1 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1626 -0.7 -3.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3668 -0.7 -3.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_4235 -0.7 -1.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf1N1B4_5591 -0.7 -1.3 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_3044 -0.7 -1.7 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_5051 -0.7 -1.3 Sensor protein DegS compare
Pf1N1B4_644 -0.7 -0.8 Cold shock protein CspC compare
Pf1N1B4_4523 -0.7 -1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2228 -0.7 -1.9 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5830 -0.7 -1.9 FIG023677: hypothetical protein compare
Pf1N1B4_2144 -0.7 -3.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_614 -0.7 -1.8 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_4835 -0.7 -1.2 Carbon starvation protein A compare
Pf1N1B4_3531 -0.7 -1.2 FIG039061: hypothetical protein related to heme utilization compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress Cephalothin sodium salt across organisms