Experiment set4IT054 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x - replicate 2

200 most important genes:

  gene name fitness t score description  
Xcc-8004.884.1 -3.7 -5.7 Rod shape-determining protein MreD compare
Xcc-8004.1336.1 -3.5 -8.7 two-component system sensor protein compare
Xcc-8004.5192.1 -3.2 -12.0 hypothetical protein compare
Xcc-8004.4286.1 -3.1 -8.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.271.1 -3.0 -4.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.907.1 -2.9 -17.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.5193.1 -2.9 -17.5 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4457.1 -2.8 -6.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1763.1 -2.7 -4.0 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.495.1 -2.7 -8.3 EpiH/GdmH-related protein compare
Xcc-8004.623.1 -2.6 -3.8 Phosphoserine phosphatase compare
Xcc-8004.1236.1 -2.6 -6.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1727.1 -2.5 -4.2 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2217.1 -2.5 -3.8 FIG01209779: hypothetical protein compare
Xcc-8004.1241.1 -2.4 -5.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3346.1 -2.3 -3.1 hypothetical protein compare
Xcc-8004.1282.1 -2.3 -4.9 sulfur deprivation response regulator compare
Xcc-8004.1871.1 -2.2 -3.9 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4102.1 -2.2 -3.3 FIG01211949: hypothetical protein compare
Xcc-8004.429.1 -2.0 -2.6 hypothetical protein compare
Xcc-8004.2335.1 -2.0 -6.6 Transport ATP-binding protein CydC compare
Xcc-8004.4039.1 -1.9 -3.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.3433.1 -1.8 -6.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2343.1 -1.7 -1.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1841.1 -1.6 -3.6 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4616.1 -1.6 -6.7 Sensor histidine kinase compare
Xcc-8004.4112.1 -1.6 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.914.1 -1.6 -6.3 tail-specific protease compare
Xcc-8004.1615.1 -1.6 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2761.1 -1.5 -2.7 FIG01212073: hypothetical protein compare
Xcc-8004.4620.1 -1.5 -6.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1027.1 -1.5 -1.8 Two-component system sensor protein compare
Xcc-8004.4776.1 -1.5 -2.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.2346.1 -1.4 -2.2 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3923.1 -1.4 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.234.1 -1.4 -8.0 cardiolipin synthase compare
Xcc-8004.4877.1 -1.4 -11.7 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2334.1 -1.4 -5.5 Transport ATP-binding protein CydD compare
Xcc-8004.270.1 -1.3 -5.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4477.1 -1.3 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.171.1 -1.3 -1.9 hypothetical protein compare
Xcc-8004.589.1 -1.3 -2.3 hypothetical protein compare
Xcc-8004.432.1 -1.3 -2.3 hypothetical protein compare
Xcc-8004.4292.1 -1.3 -2.7 Taurine transport ATP-binding protein TauB compare
Xcc-8004.4200.1 -1.3 -1.9 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.29.1 -1.2 -5.5 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.5268.1 -1.2 -2.6 Mobile element protein compare
Xcc-8004.3670.1 -1.2 -2.1 Response regulator compare
Xcc-8004.2169.1 -1.2 -2.5 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.4699.1 -1.1 -1.3 Flagellar motor protein compare
Xcc-8004.3201.1 -1.1 -2.4 hypothetical protein compare
Xcc-8004.1790.1 -1.1 -3.1 Zinc uptake regulation protein ZUR compare
Xcc-8004.930.1 -1.1 -6.2 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.5205.1 -1.1 -2.6 FIG01210461: hypothetical protein compare
Xcc-8004.2333.1 -1.1 -6.0 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.2372.1 -1.1 -4.6 Pheromone shutdown protein compare
Xcc-8004.3676.1 -1.1 -2.5 Translation elongation factor LepA compare
Xcc-8004.574.1 -1.0 -4.8 Di-/tripeptide transporter compare
Xcc-8004.3049.1 -1.0 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4948.1 -1.0 -1.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4181.1 -1.0 -1.4 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.3395.1 -1.0 -2.4 Transcriptional regulator, GntR family compare
Xcc-8004.4923.1 -1.0 -2.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.1486.1 -1.0 -2.4 Coenzyme PQQ synthesis protein D compare
Xcc-8004.5326.1 -1.0 -1.6 Mobile element protein compare
Xcc-8004.5367.1 -1.0 -3.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4853.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.4210.1 -1.0 -3.5 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.659.1 -1.0 -2.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1085.1 -1.0 -1.6 FIG01212308: hypothetical protein compare
Xcc-8004.3431.1 -1.0 -1.3 DNA repair protein RecN compare
Xcc-8004.4092.1 -0.9 -5.6 FIG01209901: hypothetical protein compare
Xcc-8004.3326.1 -0.9 -3.0 FIG01212390: hypothetical protein compare
Xcc-8004.299.1 -0.9 -2.0 Acyltransferase compare
Xcc-8004.543.1 -0.9 -2.5 FIG01210004: hypothetical protein compare
Xcc-8004.2659.1 -0.9 -2.3 FIG01212223: hypothetical protein compare
Xcc-8004.4373.1 -0.9 -2.1 LppC putative lipoprotein compare
Xcc-8004.4423.1 -0.9 -1.6 General secretion pathway protein N compare
Xcc-8004.4824.1 -0.9 -6.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1657.1 -0.9 -1.9 PTS system, mannose-specific IIA component compare
Xcc-8004.3296.1 -0.9 -3.4 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.4529.1 -0.9 -1.0 FIG01210979: hypothetical protein compare
Xcc-8004.2387.1 -0.9 -1.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.5366.1 -0.9 -6.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.1906.1 -0.8 -2.5 lipoprotein compare
Xcc-8004.5368.1 -0.8 -2.1 FIG01210868: hypothetical protein compare
Xcc-8004.2168.1 -0.8 -2.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3536.1 -0.8 -2.7 FIG01210913: hypothetical protein compare
Xcc-8004.1118.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.4775.1 -0.8 -4.6 Cell division protein FtsX compare
Xcc-8004.1380.1 -0.8 -1.3 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.726.1 -0.8 -0.9 Putative preQ0 transporter compare
Xcc-8004.2561.1 -0.8 -4.5 FIG01213638: hypothetical protein compare
Xcc-8004.2215.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.2081.1 -0.8 -2.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2922.1 -0.8 -1.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1755.1 -0.8 -2.8 COG2879, Hypothetical small protein yjiX compare
Xcc-8004.4732.1 -0.8 -1.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2011.1 -0.8 -1.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.998.1 -0.8 -0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.93.1 -0.8 -1.5 FIG01211857: hypothetical protein compare
Xcc-8004.3655.1 -0.8 -1.4 FIG01210025: hypothetical protein compare
Xcc-8004.2358.1 -0.8 -4.2 Segregation and condensation protein A compare
Xcc-8004.4168.1 -0.8 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.3703.1 -0.8 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4738.1 -0.8 -4.6 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.4521.1 -0.8 -3.3 outer membrane protein compare
Xcc-8004.5365.1 -0.7 -3.6 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.705.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.3483.1 -0.7 -3.5 Outer membrane protein A precursor compare
Xcc-8004.1147.1 -0.7 -3.0 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Xcc-8004.4522.1 -0.7 -4.2 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.3863.1 -0.7 -2.6 Septum site-determining protein MinD compare
Xcc-8004.4251.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.1124.1 -0.7 -1.6 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4466.1 -0.7 -3.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.279.1 -0.7 -2.0 FIG01210420: hypothetical protein compare
Xcc-8004.3722.1 -0.7 -1.0 HrpB7 protein compare
Xcc-8004.2386.1 -0.7 -4.8 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1334.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.4339.1 -0.7 -1.6 FIG01211792: hypothetical protein compare
Xcc-8004.1007.1 -0.7 -1.3 acetylxylan esterase compare
Xcc-8004.1920.1 -0.7 -4.9 Metallopeptidase compare
Xcc-8004.5343.1 -0.7 -3.2 hypothetical protein compare
Xcc-8004.3861.1 -0.7 -3.3 FIG01210504: hypothetical protein compare
Xcc-8004.2839.1 -0.7 -0.7 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.4737.1 -0.7 -2.2 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4945.1 -0.7 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.3788.1 -0.7 -1.8 Protein of unknown function DUF1428 compare
Xcc-8004.1566.1 -0.7 -1.5 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.4665.1 -0.7 -1.5 FIG01211765: hypothetical protein compare
Xcc-8004.1264.1 -0.7 -2.6 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4465.1 -0.7 -2.6 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.5407.1 -0.7 -0.9 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.1511.1 -0.7 -1.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4467.1 -0.7 -2.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.898.1 -0.7 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3188.1 -0.6 -2.1 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.2552.1 -0.6 -1.7 Mobile element protein compare
Xcc-8004.2385.1 -0.6 -3.3 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.4227.1 -0.6 -2.1 ThiJ/PfpI family protein compare
Xcc-8004.1943.1 -0.6 -1.5 FIG01211831: hypothetical protein compare
Xcc-8004.3329.1 -0.6 -1.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.4000.1 -0.6 -1.5 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.5114.1 -0.6 -3.0 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3054.1 -0.6 -0.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1108.1 -0.6 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.2945.1 -0.6 -1.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.3374.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.1696.1 -0.6 -0.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1879.1 -0.6 -2.9 Septum formation protein Maf compare
Xcc-8004.3802.1 -0.6 -2.9 NADH:flavin oxidoreductase/NADH oxidase compare
Xcc-8004.932.1 -0.6 -2.7 histidine kinase/response regulator hybrid protein compare
Xcc-8004.3322.1 -0.6 -0.7 FIG01211446: hypothetical protein compare
Xcc-8004.2357.1 -0.6 -1.3 Segregation and condensation protein B compare
Xcc-8004.564.1 -0.6 -0.8 Mobile element protein compare
Xcc-8004.1434.1 -0.6 -0.9 FIG000859: hypothetical protein YebC compare
Xcc-8004.3058.1 -0.6 -1.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.4979.1 -0.6 -3.1 Beta-lactamase related protein compare
Xcc-8004.5328.1 -0.6 -1.8 Mobile element protein compare
Xcc-8004.5352.1 -0.6 -1.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.5369.1 -0.6 -2.5 Lipoprotein compare
Xcc-8004.3333.1 -0.6 -2.1 5'-nucleotidase (EC 3.1.3.5) compare
Xcc-8004.312.1 -0.6 -2.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.4078.1 -0.6 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3248.1 -0.6 -3.6 hypothetical protein compare
Xcc-8004.4912.1 -0.6 -1.6 FIG01210621: hypothetical protein compare
Xcc-8004.2632.1 -0.6 -1.6 Minor coat protein compare
Xcc-8004.3479.1 -0.6 -0.9 aklaviketone reductase compare
Xcc-8004.1950.1 -0.6 -2.0 FIG01210891: hypothetical protein compare
Xcc-8004.3787.1 -0.6 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4759.1 -0.6 -4.5 protease IV compare
Xcc-8004.4557.1 -0.6 -2.0 ABC transporter ATP-binding protein compare
Xcc-8004.1610.1 -0.6 -1.2 MFS transporter compare
Xcc-8004.1808.1 -0.6 -1.6 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.2450.1 -0.6 -4.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.4879.1 -0.6 -2.0 FIG01209773: hypothetical protein compare
Xcc-8004.740.1 -0.6 -1.3 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.5213.1 -0.6 -2.2 Xylose isomerase (EC 5.3.1.5) compare
Xcc-8004.4789.1 -0.6 -2.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Xcc-8004.1399.1 -0.6 -2.2 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Xcc-8004.4486.1 -0.6 -4.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.2646.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.3310.1 -0.5 -2.0 Chromosome partition protein smc compare
Xcc-8004.3324.1 -0.5 -1.7 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3385.1 -0.5 -1.6 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.1045.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.4464.1 -0.5 -3.4 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.1912.1 -0.5 -2.9 Cell wall-associated hydrolases (invasion-associated proteins) compare
Xcc-8004.5376.1 -0.5 -2.8 DNA recombination protein RmuC compare
Xcc-8004.165.1 -0.5 -0.5 hypothetical protein compare
Xcc-8004.3158.1 -0.5 -2.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.3786.1 -0.5 -0.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4377.1 -0.5 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1676.1 -0.5 -3.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.127.1 -0.5 -1.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4026.1 -0.5 -2.4 FIG01209666: hypothetical protein compare
Xcc-8004.2952.1 -0.5 -2.6 transcriptional regulator, Crp/Fnr family compare
Xcc-8004.5232.1 -0.5 -2.1 hypothetical protein compare
Xcc-8004.665.1 -0.5 -1.8 FIG01211711: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB across organisms