Experiment set4IT053 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Dimethyl Sulfoxide 6.5 vol%

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -3.6 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_769 -2.9 -7.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2526 -2.5 -14.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_652 -2.2 -9.8 Sensory box histidine kinase compare
Pf1N1B4_2209 -2.1 -8.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1317 -2.0 -3.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_2491 -2.0 -3.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2114 -1.8 -6.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2487 -1.8 -7.9 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_4833 -1.8 -3.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1234 -1.8 -4.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2489 -1.7 -5.3 Biotin synthesis protein BioH compare
Pf1N1B4_1906 -1.7 -3.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2488 -1.7 -6.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_4320 -1.7 -3.7 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_3143 -1.6 -2.7 RecA protein compare
Pf1N1B4_3011 -1.5 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_2939 -1.5 -5.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_35 -1.5 -2.4 hypothetical protein compare
Pf1N1B4_4980 -1.4 -2.2 putative lipoprotein compare
Pf1N1B4_2005 -1.4 -1.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3331 -1.4 -3.0 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_3833 -1.4 -6.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2856 -1.3 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2874 -1.3 -2.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4992 -1.3 -3.4 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_2490 -1.3 -4.5 Biotin synthesis protein BioC compare
Pf1N1B4_765 -1.3 -2.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_3775 -1.3 -2.3 FIG00956876: hypothetical protein compare
Pf1N1B4_2105 -1.3 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3906 -1.3 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2106 -1.3 -2.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4627 -1.3 -2.5 FIG00957600: hypothetical protein compare
Pf1N1B4_2360 -1.3 -1.9 hypothetical protein compare
Pf1N1B4_619 -1.3 -2.2 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_564 -1.3 -2.6 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_175 -1.3 -2.1 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_578 -1.3 -2.8 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3582 -1.2 -2.3 C-methyltransferase compare
Pf1N1B4_2384 -1.2 -7.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1126 -1.2 -2.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_5498 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_4132 -1.1 -1.9 Mobile element protein compare
Pf1N1B4_1403 -1.1 -5.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2377 -1.1 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4531 -1.1 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_4107 -1.1 -1.9 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3006 -1.1 -4.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_2947 -1.1 -3.7 Restriction endonuclease compare
Pf1N1B4_1472 -1.1 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4437 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_4330 -1.1 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_3290 -1.1 -1.9 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4208 -1.0 -1.8 organophosphate pesticide hydrolase compare
Pf1N1B4_617 -1.0 -1.8 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_5219 -1.0 -2.1 tRNA-Gly-CCC compare
Pf1N1B4_5724 -1.0 -2.1 High-affinity iron permease compare
Pf1N1B4_255 -1.0 -3.5 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_3020 -1.0 -3.6 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_2527 -1.0 -6.1 ApaG protein compare
Pf1N1B4_412 -1.0 -1.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_430 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_2117 -1.0 -7.1 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_4897 -1.0 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_4195 -1.0 -2.9 Transcriptional regulator, TetR family compare
Pf1N1B4_81 -1.0 -2.0 Putative sulfate permease compare
Pf1N1B4_5430 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_5591 -1.0 -1.6 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_629 -1.0 -2.2 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_1 -1.0 -1.7 Colicin V production protein compare
Pf1N1B4_1683 -1.0 -1.3 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1619 -0.9 -5.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_740 -0.9 -2.1 Leucyl-tRNA synthetase compare
Pf1N1B4_525 -0.9 -2.4 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_3396 -0.9 -1.7 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2060 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_5330 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_4017 -0.9 -1.6 DNA-binding heavy metal response regulator compare
Pf1N1B4_4001 -0.9 -1.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4733 -0.9 -2.0 Fap system putative outer membrane protein compare
Pf1N1B4_74 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1181 -0.9 -2.8 UPF0125 protein yfjF compare
Pf1N1B4_4257 -0.9 -1.7 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3416 -0.9 -3.4 Outer membrane protein romA compare
Pf1N1B4_2071 -0.9 -1.2 Protein phosphatase ImpM compare
Pf1N1B4_1475 -0.9 -4.0 FIG00962376: hypothetical protein compare
Pf1N1B4_4166 -0.9 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_414 -0.9 -2.7 transcriptional regulator compare
Pf1N1B4_1402 -0.9 -2.4 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_337 -0.9 -2.8 O-antigen export system permease protein RfbD compare
Pf1N1B4_339 -0.9 -1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1115 -0.9 -5.2 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1358 -0.9 -2.3 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_4969 -0.9 -1.4 FIG00956189: hypothetical protein compare
Pf1N1B4_1581 -0.9 -2.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_2283 -0.8 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2885 -0.8 -3.3 Paraquat-inducible protein A compare
Pf1N1B4_336 -0.8 -6.2 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1670 -0.8 -2.7 FIG001957: putative hydrolase compare
Pf1N1B4_5777 -0.8 -2.2 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_2352 -0.8 -3.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_2695 -0.8 -1.3 Rare lipoprotein A precursor compare
Pf1N1B4_2768 -0.8 -2.5 DNA repair protein RadA compare
Pf1N1B4_2940 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_373 -0.8 -2.1 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_2682 -0.8 -1.3 Antiholin-like protein LrgA compare
Pf1N1B4_3507 -0.8 -5.6 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf1N1B4_3499 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_2486 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3723 -0.8 -1.4 FIG00957314: hypothetical protein compare
Pf1N1B4_1568 -0.8 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_3454 -0.8 -3.2 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_5899 -0.8 -1.3 FIG00954746: hypothetical protein compare
Pf1N1B4_614 -0.8 -2.1 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_2891 -0.8 -2.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4478 -0.8 -1.9 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_2833 -0.8 -2.1 Benzoate transport protein compare
Pf1N1B4_1300 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1544 -0.8 -4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4931 -0.8 -1.6 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1366 -0.8 -2.0 FMN-dependent NADH-azoreductase compare
Pf1N1B4_2296 -0.8 -2.2 FIG00350678: hypothetical protein compare
Pf1N1B4_4939 -0.8 -1.9 sodium/hydrogen exchanger family protein compare
Pf1N1B4_3246 -0.8 -2.0 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_4979 -0.8 -1.9 Transcriptional regulator, AsnC family compare
Pf1N1B4_1561 -0.8 -2.1 FIG00954300: hypothetical protein compare
Pf1N1B4_1105 -0.8 -1.3 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4481 -0.8 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_1620 -0.8 -3.0 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase compare
Pf1N1B4_3296 -0.8 -1.9 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_2783 -0.8 -1.5 Transcription elongation factor GreB-related protein compare
Pf1N1B4_5745 -0.8 -1.0 FIG139928: Putative protease compare
Pf1N1B4_2067 -0.8 -1.9 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_5904 -0.8 -1.4 FIG00955320: hypothetical protein compare
Pf1N1B4_3466 -0.8 -1.2 FIG00955605: hypothetical protein compare
Pf1N1B4_2807 -0.7 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_4558 -0.7 -1.5 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_1914 -0.7 -2.9 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_3855 -0.7 -2.0 Chromosome partition protein smc compare
Pf1N1B4_4972 -0.7 -1.5 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1593 -0.7 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_263 -0.7 -1.8 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf1N1B4_566 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_4436 -0.7 -2.0 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4523 -0.7 -1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_29 -0.7 -1.6 FIG00967200: hypothetical protein compare
Pf1N1B4_967 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5294 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_683 -0.7 -2.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_615 -0.7 -1.5 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_341 -0.7 -2.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_2845 -0.7 -2.5 FIG00953066: hypothetical protein compare
Pf1N1B4_3281 -0.7 -2.2 AidA compare
Pf1N1B4_4112 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_4181 -0.7 -1.7 FIG00957123: hypothetical protein compare
Pf1N1B4_2339 -0.7 -0.9 COG1872 compare
Pf1N1B4_2935 -0.7 -1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_3125 -0.7 -2.2 FIG00954242: hypothetical protein compare
Pf1N1B4_4857 -0.7 -2.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1236 -0.7 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_76 -0.7 -1.6 ATP binding protein compare
Pf1N1B4_1118 -0.7 -1.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4549 -0.7 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_1057 -0.7 -1.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5261 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_1540 -0.7 -1.9 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_4846 -0.7 -2.1 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_202 -0.7 -1.9 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_4834 -0.7 -2.5 Sensor histidine kinase compare
Pf1N1B4_1891 -0.7 -1.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_2888 -0.7 -2.3 FIG00961017: hypothetical protein compare
Pf1N1B4_4083 -0.7 -1.6 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4959 -0.7 -2.5 Protein containing domains DUF403 compare
Pf1N1B4_2744 -0.7 -3.3 Transcriptional regulator, IclR family compare
Pf1N1B4_1059 -0.7 -1.6 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_2421 -0.7 -1.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_56 -0.7 -1.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4357 -0.7 -1.2 Putrescine utilization regulator compare
Pf1N1B4_4621 -0.7 -1.7 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_1462 -0.7 -5.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2163 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_1837 -0.7 -1.2 Osmotically inducible protein C compare
Pf1N1B4_1830 -0.7 -3.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5720 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_623 -0.7 -1.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_1048 -0.7 -2.1 Sulfate transporter, CysZ-type compare
Pf1N1B4_673 -0.7 -1.6 MoxR-like ATPases compare
Pf1N1B4_4692 -0.6 -2.6 hypothetical protein compare
Pf1N1B4_3885 -0.6 -2.3 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_1443 -0.6 -2.3 FIG074102: hypothetical protein compare
Pf1N1B4_2441 -0.6 -2.0 Electron transfer flavoprotein, alpha subunit compare
Pf1N1B4_5045 -0.6 -1.8 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_3242 -0.6 -1.7 GCN5-related N-acetyltransferase compare
Pf1N1B4_4585 -0.6 -1.1 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_208 -0.6 -1.1 Two-component system response regulator QseB compare
Pf1N1B4_753 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_4517 -0.6 -1.3 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_2407 -0.6 -2.4 FIG00953367: hypothetical protein compare
Pf1N1B4_2853 -0.6 -1.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4596 -0.6 -1.4 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress Dimethyl Sulfoxide across organisms