Experiment set4IT053 for Pseudomonas fluorescens SBW25-INTG
Temperature shift 10_to_30
Group: temperature shiftMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Ammonium chloride (10 mM)
Culturing: PseudoSBW25_INTG_ML3, tube, Aerobic, at 10_to_30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 12 genes in this experiment
For temperature shift D-Glucose in Pseudomonas fluorescens SBW25-INTG
For temperature shift D-Glucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| High affinity phosphate transporter and control of PHO regulon | 2 |
| Phosphate metabolism | 2 |
| Folate Biosynthesis | 1 |
| Fructose utilization | 1 |
| Pentose phosphate pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pentose phosphate pathway (non-oxidative branch) I | 5 | 5 | 1 |
| pentose phosphate pathway | 8 | 8 | 1 |
| formaldehyde assimilation II (assimilatory RuMP Cycle) | 9 | 6 | 1 |
| Rubisco shunt | 10 | 8 | 1 |
| formaldehyde assimilation III (dihydroxyacetone cycle) | 12 | 10 | 1 |
| Bifidobacterium shunt | 15 | 12 | 1 |
| superpathway of glucose and xylose degradation | 17 | 16 | 1 |