Culturing: acidovorax_3H11_ML3a, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| L-glutamine degradation I | 1 | 1 | 1 |
| 4-aminobenzoate biosynthesis I | 2 | 2 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| β-alanine degradation II | 2 | 2 | 1 |
| putrescine degradation V | 2 | 1 | 1 |
| ethylene glycol degradation | 2 | 1 | 1 |
| β-alanine degradation I | 2 | 1 | 1 |
| putrescine degradation I | 2 | 1 | 1 |
| NAD salvage pathway II (PNC IV cycle) | 5 | 4 | 2 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| gentisate degradation I | 3 | 3 | 1 |
| ethanol degradation II | 3 | 3 | 1 |
| ketolysis | 3 | 3 | 1 |
| NAD de novo biosynthesis I | 6 | 5 | 2 |
| NAD de novo biosynthesis IV (anaerobic) | 6 | 4 | 2 |
| NAD de novo biosynthesis III | 6 | 4 | 2 |
| ethanol degradation III | 3 | 2 | 1 |
| hypotaurine degradation | 3 | 2 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| L-methionine salvage from L-homocysteine | 3 | 1 | 1 |
| resorcinol degradation | 3 | 1 | 1 |
| 4-toluenecarboxylate degradation | 3 | 1 | 1 |
| histamine degradation | 3 | 1 | 1 |
| glutathione-peroxide redox reactions | 3 | 1 | 1 |
| pentachlorophenol degradation | 10 | 4 | 3 |
| NAD salvage pathway I (PNC VI cycle) | 7 | 5 | 2 |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 12 | 12 | 3 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| L-methionine biosynthesis III | 4 | 4 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| gondoate biosynthesis (anaerobic) | 4 | 4 | 1 |
| phytol degradation | 4 | 3 | 1 |
| NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde | 4 | 3 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 3 | 1 |
| 4-sulfocatechol degradation | 4 | 2 | 1 |
| fatty acid α-oxidation I (plants) | 4 | 2 | 1 |
| γ-resorcylate degradation I | 4 | 1 | 1 |
| D-arabinose degradation II | 4 | 1 | 1 |
| 4-aminophenol degradation | 4 | 1 | 1 |
| 4-toluenesulfonate degradation I | 4 | 1 | 1 |
| 4-hydroxy-2-nonenal detoxification | 4 | 1 | 1 |
| putrescine degradation III | 4 | 1 | 1 |
| γ-resorcylate degradation II | 4 | 1 | 1 |
| L-tryptophan degradation X (mammalian, via tryptamine) | 4 | 1 | 1 |
| palmitate biosynthesis III | 29 | 28 | 7 |
| tetradecanoate biosynthesis (mitochondria) | 25 | 23 | 6 |
| palmitate biosynthesis II (type II fatty acid synthase) | 31 | 29 | 7 |
| palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) | 9 | 8 | 2 |
| oleate biosynthesis IV (anaerobic) | 14 | 13 | 3 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 49 | 11 |
| fatty acid elongation -- saturated | 5 | 5 | 1 |
| superpathway of unsaturated fatty acids biosynthesis (E. coli) | 20 | 18 | 4 |
| 8-amino-7-oxononanoate biosynthesis IV | 5 | 4 | 1 |
| cis-vaccenate biosynthesis | 5 | 4 | 1 |
| ketogenesis | 5 | 3 | 1 |
| NAD salvage pathway V (PNC V cycle) | 5 | 3 | 1 |
| acrylate degradation I | 5 | 3 | 1 |
| propanoyl-CoA degradation II | 5 | 3 | 1 |
| L-tyrosine degradation I | 5 | 3 | 1 |
| L-methionine biosynthesis I | 5 | 3 | 1 |
| 4-chlorocatechol degradation | 5 | 3 | 1 |
| octane oxidation | 5 | 3 | 1 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| 3-chlorocatechol degradation II (ortho) | 5 | 2 | 1 |
| mitochondrial NADPH production (yeast) | 5 | 2 | 1 |
| 3-chlorocatechol degradation I (ortho) | 5 | 2 | 1 |
| dopamine degradation | 5 | 1 | 1 |
| 4-nitrophenol degradation I | 5 | 1 | 1 |
| 4-nitrophenol degradation II | 5 | 1 | 1 |
| 4-hydroxyacetophenone degradation | 5 | 1 | 1 |
| superpathway of fatty acid biosynthesis II (plant) | 43 | 38 | 8 |
| 8-amino-7-oxononanoate biosynthesis I | 11 | 9 | 2 |
| even iso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| anteiso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| odd iso-branched-chain fatty acid biosynthesis | 34 | 30 | 6 |
| (5Z)-dodecenoate biosynthesis I | 6 | 6 | 1 |
| stearate biosynthesis II (bacteria and plants) | 6 | 5 | 1 |
| (5Z)-dodecenoate biosynthesis II | 6 | 5 | 1 |
| stearate biosynthesis IV | 6 | 4 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 1 |
| 5-nitroanthranilate degradation | 6 | 3 | 1 |
| petroselinate biosynthesis | 6 | 2 | 1 |
| alkane oxidation | 6 | 1 | 1 |
| noradrenaline and adrenaline degradation | 13 | 4 | 2 |
| streptorubin B biosynthesis | 34 | 20 | 5 |
| L-glutamate and L-glutamine biosynthesis | 7 | 7 | 1 |
| superpathway of glycol metabolism and degradation | 7 | 5 | 1 |
| 4,5-dichlorocatechol degradation | 7 | 4 | 1 |
| 2,4,6-trichlorophenol degradation | 7 | 3 | 1 |
| chlorosalicylate degradation | 7 | 3 | 1 |
| serotonin degradation | 7 | 3 | 1 |
| 2,4-dinitrotoluene degradation | 7 | 2 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| myo-inositol degradation I | 7 | 1 | 1 |
| limonene degradation IV (anaerobic) | 7 | 1 | 1 |
| biotin biosynthesis I | 15 | 13 | 2 |
| superpathway of fatty acid biosynthesis I (E. coli) | 16 | 15 | 2 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| L-valine degradation I | 8 | 6 | 1 |
| superpathway of L-homoserine and L-methionine biosynthesis | 8 | 6 | 1 |
| superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) | 8 | 4 | 1 |
| 3,5-dichlorocatechol degradation | 8 | 4 | 1 |
| superpathway of ornithine degradation | 8 | 3 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-allylmalonyl-CoA biosynthesis | 8 | 2 | 1 |
| aromatic biogenic amine degradation (bacteria) | 8 | 1 | 1 |
| aspartate superpathway | 25 | 22 | 3 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 7 | 1 |
| superpathway of S-adenosyl-L-methionine biosynthesis | 9 | 7 | 1 |
| folate transformations III (E. coli) | 9 | 7 | 1 |
| NAD de novo biosynthesis II (from tryptophan) | 9 | 6 | 1 |
| 3,4,6-trichlorocatechol degradation | 9 | 5 | 1 |
| 1,4-dichlorobenzene degradation | 9 | 4 | 1 |
| photorespiration I | 9 | 4 | 1 |
| photorespiration III | 9 | 4 | 1 |
| Entner-Doudoroff pathway II (non-phosphorylative) | 9 | 4 | 1 |
| 2,4,5-trichlorophenoxyacetate degradation | 9 | 3 | 1 |
| gliotoxin biosynthesis | 9 | 1 | 1 |
| chloramphenicol biosynthesis | 9 | 1 | 1 |
| glutathione-mediated detoxification II | 9 | 1 | 1 |
| superpathway of tetrahydrofolate biosynthesis | 10 | 9 | 1 |
| 3-phenylpropanoate degradation | 10 | 6 | 1 |
| peptidoglycan recycling II | 10 | 5 | 1 |
| photorespiration II | 10 | 4 | 1 |
| pinoresinol degradation | 10 | 2 | 1 |
| myo-, chiro- and scyllo-inositol degradation | 10 | 1 | 1 |
| folate transformations II (plants) | 11 | 8 | 1 |
| γ-hexachlorocyclohexane degradation | 11 | 6 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 4 | 1 |
| superpathway of candicidin biosynthesis | 11 | 3 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |
| superpathway of tetrahydrofolate biosynthesis and salvage | 12 | 11 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |
| indole glucosinolate activation (intact plant cell) | 12 | 3 | 1 |
| camalexin biosynthesis | 12 | 2 | 1 |
| folate transformations I | 13 | 7 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 6 | 1 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 9 | 1 |
| superpathway of L-methionine salvage and degradation | 16 | 7 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| mycolate biosynthesis | 205 | 21 | 5 |
| superpathway of pentose and pentitol degradation | 42 | 14 | 1 |
| superpathway of mycolate biosynthesis | 239 | 22 | 5 |
| superpathway of chorismate metabolism | 59 | 44 | 1 |