Experiment set4IT051 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with methylglyoxal 0.009 vol%

200 most important genes:

  gene name fitness t score description  
AO353_23490 -4.3 -4.2 hydroxyacylglutathione hydrolase conserved
AO353_09315 -4.1 -6.3 LysR family transcriptional regulator compare
AO353_21455 -3.8 -2.6 cation:proton antiporter compare
AO353_20565 -3.7 -1.8 tRNA-Ala compare
AO353_13100 -3.6 -2.5 GTPase RsgA compare
AO353_06865 -3.5 -14.8 catalase conserved
AO353_14775 -3.4 -3.3 hypothetical protein compare
AO353_14220 -3.3 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_16835 -3.2 -2.9 LuxR family transcriptional regulator compare
AO353_22685 -3.2 -2.2 peroxidase compare
AO353_09345 -3.2 -2.9 hypothetical protein compare
AO353_16805 -3.1 -4.7 recombinase RecA compare
AO353_03360 -3.0 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_11945 -3.0 -1.4 4-oxalocrotonate tautomerase compare
AO353_05625 -2.9 -1.9 transcription elongation factor GreA compare
AO353_13200 -2.9 -8.3 exoribonuclease R compare
AO353_12580 -2.9 -2.7 type II secretory protein PulK compare
AO353_09320 -2.9 -9.5 ATP-dependent DNA helicase RecG compare
AO353_26935 -2.9 -3.8 LysR family transcriptional regulator compare
AO353_03590 -2.9 -2.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_12690 -2.8 -1.3 acyl carrier protein compare
AO353_03585 -2.7 -3.6 ATP-dependent DNA helicase RuvA compare
AO353_00310 -2.7 -8.7 transaldolase compare
AO353_16585 -2.7 -10.9 S-formylglutathione hydrolase conserved
AO353_26955 -2.7 -7.0 lactoylglutathione lyase conserved
AO353_03580 -2.7 -2.6 ATP-dependent DNA helicase RuvB compare
AO353_12105 -2.7 -6.5 peptidase S41 compare
AO353_05150 -2.6 -4.6 ABC transporter ATP-binding protein compare
AO353_16915 -2.6 -11.0 hypothetical protein compare
AO353_00825 -2.6 -3.0 porin compare
AO353_21830 -2.6 -14.3 chemotaxis protein CheY compare
AO353_02735 -2.5 -13.9 chemotaxis protein CheY compare
AO353_16425 -2.5 -2.1 Fe-S metabolism protein SufE compare
AO353_08110 -2.5 -4.9 glutathione synthetase compare
AO353_02710 -2.4 -10.3 (p)ppGpp synthetase compare
AO353_04365 -2.3 -5.7 recombinase XerD compare
AO353_13720 -2.3 -14.2 arginine decarboxylase compare
AO353_14940 -2.3 -4.5 malate:quinone oxidoreductase compare
AO353_04500 -2.3 -3.0 DNA repair protein RecO compare
AO353_27950 -2.3 -2.2 hypothetical protein compare
AO353_16940 -2.3 -5.9 deoxycytidine triphosphate deaminase compare
AO353_11455 -2.3 -2.6 hypothetical protein compare
AO353_10055 -2.3 -11.6 DNA helicase II compare
AO353_08465 -2.3 -12.4 phosphoenolpyruvate-protein phosphotransferase compare
AO353_05550 -2.2 -7.2 pseudouridine synthase compare
AO353_11730 -2.2 -8.1 glutamate--cysteine ligase compare
AO353_16040 -2.2 -2.9 hypothetical protein compare
AO353_07315 -2.1 -2.8 rRNA methyltransferase compare
AO353_11915 -2.1 -7.9 agmatine deiminase compare
AO353_01220 -2.1 -1.9 hypothetical protein compare
AO353_23450 -2.1 -3.0 LysR family transcriptional regulator compare
AO353_20925 -2.1 -2.1 hypothetical protein compare
AO353_16530 -2.1 -2.0 ribonuclease HII compare
AO353_03615 -2.0 -3.7 cold-shock protein compare
AO353_12765 -2.0 -3.7 transcriptional regulator compare
AO353_25845 -2.0 -3.4 GNAT family acetyltransferase compare
AO353_04565 -2.0 -5.6 nucleoid-associated protein compare
AO353_05690 -2.0 -3.5 SsrA-binding protein compare
AO353_09885 -2.0 -2.3 transcriptional regulator PhoU compare
AO353_10930 -1.9 -7.2 DNA polymerase I compare
AO353_01215 -1.9 -9.5 hypothetical protein compare
AO353_16495 -1.9 -5.6 zinc metallopeptidase RseP compare
AO353_05130 -1.9 -1.7 anti-anti-sigma factor compare
AO353_10320 -1.9 -2.0 hypothetical protein compare
AO353_20185 -1.9 -6.3 DNA-binding protein compare
AO353_05140 -1.9 -8.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_17640 -1.9 -2.1 serine peptidase compare
AO353_18555 -1.9 -9.9 aromatic amino acid transporter compare
AO353_02175 -1.9 -2.3 carbon storage regulator compare
AO353_14370 -1.8 -5.5 glucose-6-phosphate isomerase compare
AO353_13925 -1.8 -2.8 XRE family transcriptional regulator compare
AO353_09050 -1.8 -3.8 recombinase XerC compare
AO353_23720 -1.8 -4.5 BatB protein compare
AO353_01795 -1.8 -2.5 hypothetical protein compare
AO353_10730 -1.8 -1.2 hypothetical protein compare
AO353_21450 -1.8 -5.9 cation:proton antiporter compare
AO353_16810 -1.8 -3.8 recombinase RecX compare
AO353_10945 -1.8 -3.0 cytochrome C compare
AO353_22500 -1.8 -1.7 hypothetical protein compare
AO353_02440 -1.8 -9.4 peptidase S41 compare
AO353_08470 -1.7 -3.3 RNA pyrophosphohydrolase compare
AO353_00330 -1.7 -7.8 hypothetical protein compare
AO353_20495 -1.7 -1.9 NUDIX hydrolase compare
AO353_04325 -1.7 -2.4 hypothetical protein compare
AO353_09275 -1.7 -3.4 DNA-directed RNA polymerase subunit omega compare
AO353_03035 -1.7 -4.9 AraC family transcriptional regulator compare
AO353_11165 -1.7 -8.9 hypothetical protein compare
AO353_06045 -1.7 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_21430 -1.6 -2.3 hypothetical protein compare
AO353_25015 -1.6 -3.3 polyketide cyclase compare
AO353_16580 -1.6 -9.0 S-(hydroxymethyl)glutathione dehydrogenase conserved
AO353_28815 -1.6 -2.6 hypothetical protein compare
AO353_26840 -1.6 -2.4 RND transporter compare
AO353_17405 -1.6 -4.5 glutamine amidotransferase conserved
AO353_09835 -1.6 -2.7 rubredoxin compare
AO353_14030 -1.6 -8.9 ABC transporter ATP-binding protein compare
AO353_29000 -1.6 -2.9 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_22580 -1.5 -2.8 3-demethylubiquinone-9 3-methyltransferase compare
AO353_08885 -1.5 -9.6 polyphosphate kinase compare
AO353_18960 -1.5 -1.7 terminase compare
AO353_27010 -1.5 -2.9 alpha-ketoglutarate-dependent dioxygenase compare
AO353_17160 -1.5 -1.9 aspartate-semialdehyde dehydrogenase compare
AO353_05010 -1.5 -1.9 HopJ type III effector protein compare
AO353_02765 -1.5 -3.0 NAD(P)H-quinone oxidoreductase compare
AO353_19250 -1.5 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_10725 -1.5 -1.1 dodecin flavoprotein compare
AO353_15975 -1.5 -3.4 GntR family transcriptional regulator compare
AO353_26520 -1.5 -2.6 TetR family transcriptional regulator compare
AO353_13165 -1.5 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
AO353_24255 -1.5 -3.4 hypothetical protein compare
AO353_11530 -1.5 -7.1 diguanylate cyclase compare
AO353_21465 -1.5 -1.9 cation:proton antiporter compare
AO353_02640 -1.5 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_07250 -1.4 -2.4 polyamine ABC transporter permease compare
AO353_09720 -1.4 -1.5 hypothetical protein compare
AO353_12945 -1.4 -6.1 toluene tolerance protein compare
AO353_12110 -1.4 -6.8 peptidase M23 compare
AO353_20140 -1.4 -3.3 hypothetical protein compare
AO353_11340 -1.4 -1.6 MarR family transcriptional regulator compare
AO353_27155 -1.4 -2.7 hypothetical protein compare
AO353_19030 -1.4 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_16420 -1.4 -5.8 thiamine biosynthesis protein ThiF compare
AO353_16605 -1.4 -8.9 protein-L-isoaspartate O-methyltransferase compare
AO353_06710 -1.4 -1.9 riboflavin synthase subunit alpha compare
AO353_15555 -1.4 -4.2 fumarylacetoacetase compare
AO353_21445 -1.4 -2.2 cation:proton antiporter compare
AO353_19810 -1.4 -2.9 filamentous hemagglutinin compare
AO353_06490 -1.4 -3.4 nicotinate-nucleotide adenylyltransferase compare
AO353_05145 -1.4 -4.8 ABC transporter permease compare
AO353_18715 -1.4 -0.8 histidine kinase compare
AO353_19310 -1.4 -1.5 enoyl-CoA hydratase compare
AO353_21425 -1.4 -3.0 hypothetical protein compare
AO353_04520 -1.4 -4.3 elongation factor 4 compare
AO353_18170 -1.3 -6.0 aspartyl beta-hydroxylase compare
AO353_04175 -1.3 -4.3 glycerol uptake facilitator GlpF compare
AO353_03110 -1.3 -3.2 hydrolase compare
AO353_18120 -1.3 -1.8 hypothetical protein compare
AO353_17850 -1.3 -2.4 SAM-dependent methyltransferase compare
AO353_14115 -1.3 -5.9 gamma-glutamyl kinase compare
AO353_21460 -1.3 -5.8 cation:proton antiporter compare
AO353_06720 -1.3 -1.5 NrdR family transcriptional regulator compare
AO353_21640 -1.3 -1.7 cobalt transporter compare
AO353_25990 -1.3 -4.6 aspartyl beta-hydroxylase compare
AO353_06050 -1.3 -4.6 exodeoxyribonuclease V subunit gamma compare
AO353_26430 -1.3 -4.2 hypothetical protein compare
AO353_06495 -1.3 -3.6 gamma-glutamyl phosphate reductase compare
AO353_06320 -1.3 -3.7 AsnC family transcriptional regulator compare
AO353_21735 -1.3 -3.8 IclR family transcriptional regulator compare
AO353_10430 -1.3 -3.1 chromosome partitioning protein ParB compare
AO353_14420 -1.3 -3.6 molecular chaperone DnaK compare
AO353_17855 -1.3 -2.5 ribonuclease D compare
AO353_21470 -1.2 -8.2 cation:proton antiporter compare
AO353_05135 -1.2 -4.8 toluene tolerance protein compare
AO353_00865 -1.2 -6.8 phosphoenolpyruvate synthase compare
AO353_06745 -1.2 -2.2 zinc-binding protein compare
AO353_12870 -1.2 -7.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_28110 -1.2 -3.2 TetR family transcriptional regulator compare
AO353_20170 -1.2 -3.6 trigger factor compare
AO353_07355 -1.2 -4.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_22785 -1.2 -3.3 peptidase compare
AO353_00495 -1.2 -1.9 DNA topoisomerase I compare
AO353_27650 -1.2 -3.5 cell division protein FtsK compare
AO353_26965 -1.2 -5.0 alkyl hydroperoxide reductase compare
AO353_16795 -1.2 -3.0 lysozyme compare
AO353_22920 -1.2 -3.3 GntR family transcriptional regulator compare
AO353_13225 -1.2 -2.3 50S ribosomal protein L9 compare
AO353_10895 -1.2 -3.0 hypothetical protein compare
AO353_17520 -1.2 -2.0 hypothetical protein compare
AO353_08165 -1.2 -2.2 pyrroline-5-carboxylate reductase compare
AO353_28495 -1.2 -1.9 hypothetical protein compare
AO353_21935 -1.2 -1.7 nitrite reductase compare
AO353_02940 -1.2 -1.9 DNA-binding protein compare
AO353_14485 -1.2 -1.3 pseudouridine synthase compare
AO353_11695 -1.2 -2.1 hypothetical protein compare
AO353_18305 -1.2 -2.8 RNA helicase compare
AO353_06335 -1.1 -8.2 AMP nucleosidase conserved
AO353_17675 -1.1 -4.1 hypothetical protein compare
AO353_20865 -1.1 -2.1 cold-shock protein compare
AO353_26220 -1.1 -2.3 hypothetical protein compare
AO353_26960 -1.1 -4.2 alkyl hydroperoxide reductase subunit F compare
AO353_20545 -1.1 -8.3 excinuclease ABC subunit B conserved
AO353_06040 -1.1 -2.4 exodeoxyribonuclease V subunit alpha compare
AO353_07925 -1.1 -5.5 beta-hydroxylase compare
AO353_01770 -1.1 -3.1 pirin compare
AO353_24340 -1.1 -1.0 TetR family transcriptional regulator compare
AO353_13120 -1.1 -4.1 carbohydrate kinase compare
AO353_11860 -1.1 -3.8 Fis family transcriptional regulator compare
AO353_06390 -1.1 -3.6 magnesium transporter compare
AO353_23710 -1.1 -3.1 protein BatD compare
AO353_23570 -1.1 -2.4 LysR family transcriptional regulator compare
AO353_09560 -1.1 -1.0 type VI secretion protein compare
AO353_19340 -1.1 -6.3 amino acid ABC transporter substrate-binding protein compare
AO353_18530 -1.1 -4.5 chromosome segregation protein ScpA compare
AO353_23735 -1.1 -4.7 AAA family ATPase compare
AO353_22645 -1.1 -1.7 hypothetical protein compare
AO353_09040 -1.1 -1.2 diaminopimelate epimerase compare
AO353_26320 -1.1 -3.4 hypothetical protein compare
AO353_07075 -1.1 -3.1 elongation factor Tu compare
AO353_14590 -1.1 -1.1 serine kinase/phosphatase compare
AO353_11780 -1.1 -1.6 hypothetical protein compare


Specific Phenotypes

For 20 genes in this experiment

For stress methylglyoxal in Pseudomonas fluorescens FW300-N2E3

For stress methylglyoxal across organisms