Experiment set4IT051 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Fusidic acid sodium salt 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1153 -4.2 -2.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_4882 -3.1 -7.0 Transcriptional regulator MexT compare
Pf1N1B4_3667 -3.0 -8.0 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1441 -3.0 -10.4 Putative esterase, FIGfam005057 compare
Pf1N1B4_2209 -2.9 -10.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1641 -2.9 -6.7 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_1180 -2.9 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1870 -2.9 -2.0 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3093 -2.8 -1.7 Outer membrane protein H precursor compare
Pf1N1B4_3817 -2.8 -4.7 FIG008443: hypothetical protein compare
Pf1N1B4_4393 -2.7 -1.8 Ferredoxin reductase compare
Pf1N1B4_3750 -2.7 -3.1 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_3668 -2.7 -5.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_72 -2.7 -2.5 Transcriptional regulator, LysR family compare
Pf1N1B4_3815 -2.6 -3.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_5095 -2.5 -3.3 hypothetical protein compare
Pf1N1B4_1837 -2.4 -2.3 Osmotically inducible protein C compare
Pf1N1B4_3388 -2.4 -9.9 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf1N1B4_1872 -2.4 -4.0 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_1749 -2.4 -1.6 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2048 -2.3 -2.2 hypothetical protein compare
Pf1N1B4_2885 -2.2 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_5799 -2.1 -3.4 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_3547 -2.1 -2.3 DNA-binding response regulator compare
Pf1N1B4_2886 -2.1 -7.5 Paraquat-inducible protein B compare
Pf1N1B4_3833 -2.1 -7.4 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3591 -2.0 -5.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_1462 -2.0 -11.0 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_4247 -2.0 -3.5 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_327 -2.0 -1.3 hypothetical protein compare
Pf1N1B4_1135 -2.0 -3.0 FIG00960055: hypothetical protein compare
Pf1N1B4_2105 -1.9 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1579 -1.9 -4.0 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_722 -1.9 -2.3 SAM-dependent methyltransferases compare
Pf1N1B4_1234 -1.9 -4.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2721 -1.9 -8.4 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_3141 -1.9 -2.3 FIG00959768: hypothetical protein compare
Pf1N1B4_3246 -1.8 -3.8 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_1869 -1.8 -5.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_5446 -1.8 -3.9 hypothetical protein compare
Pf1N1B4_2244 -1.7 -1.9 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_5685 -1.7 -3.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_3590 -1.7 -5.9 hypothetical protein compare
Pf1N1B4_3816 -1.7 -5.7 FIG139976: hypothetical protein compare
Pf1N1B4_1683 -1.7 -1.4 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4893 -1.7 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf1N1B4_3818 -1.7 -2.4 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_3826 -1.7 -7.4 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_2856 -1.7 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3906 -1.7 -4.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5289 -1.6 -2.3 hypothetical protein compare
Pf1N1B4_770 -1.6 -3.0 hypothetical protein compare
Pf1N1B4_3997 -1.6 -3.2 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1619 -1.6 -6.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_165 -1.6 -2.9 FIG00638667: hypothetical protein compare
Pf1N1B4_2884 -1.6 -4.0 Paraquat-inducible protein A compare
Pf1N1B4_3143 -1.6 -1.5 RecA protein compare
Pf1N1B4_5684 -1.6 -3.2 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_388 -1.6 -4.8 OmpA family protein compare
Pf1N1B4_2682 -1.6 -1.7 Antiholin-like protein LrgA compare
Pf1N1B4_2228 -1.6 -3.3 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_2874 -1.6 -2.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2421 -1.6 -2.9 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_5386 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_3363 -1.5 -4.6 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_974 -1.5 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_967 -1.5 -1.8 hypothetical protein compare
Pf1N1B4_2223 -1.5 -4.7 FIG006231: RNA-binding protein compare
Pf1N1B4_4285 -1.5 -3.4 Inositol transport system sugar-binding protein compare
Pf1N1B4_4644 -1.5 -1.8 hypothetical protein compare
Pf1N1B4_381 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_4851 -1.5 -2.4 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_1013 -1.5 -6.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
Pf1N1B4_626 -1.5 -4.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_4952 -1.4 -1.9 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_5666 -1.4 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2859 -1.4 -9.4 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_813 -1.4 -5.6 hypothetical protein compare
Pf1N1B4_3166 -1.4 -7.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5976 -1.4 -2.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_2917 -1.4 -5.9 FIG140336: TPR domain protein compare
Pf1N1B4_888 -1.4 -3.0 Transglycosylase, Slt family compare
Pf1N1B4_5224 -1.4 -2.7 tRNA-Arg-CCT compare
Pf1N1B4_5957 -1.4 -2.3 Arsenical resistance operon repressor compare
Pf1N1B4_4111 -1.4 -2.7 Panthothenate synthetase compare
Pf1N1B4_291 -1.4 -5.2 Major outer membrane lipoprotein I compare
Pf1N1B4_2568 -1.3 -2.2 Translation elongation factor Tu compare
Pf1N1B4_5039 -1.3 -3.1 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_2949 -1.3 -1.8 FIG00956396: hypothetical protein compare
Pf1N1B4_373 -1.3 -2.7 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_6030 -1.3 -3.8 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_2067 -1.3 -2.3 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_3656 -1.3 -1.6 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3331 -1.3 -2.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4381 -1.3 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_345 -1.3 -1.3 Integration host factor beta subunit compare
Pf1N1B4_2783 -1.3 -1.9 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2453 -1.3 -1.2 hypothetical protein compare
Pf1N1B4_3375 -1.3 -8.5 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf1N1B4_3142 -1.3 -2.8 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_359 -1.3 -2.3 GGDEF domain protein compare
Pf1N1B4_2436 -1.2 -3.6 FIG00953563: hypothetical protein compare
Pf1N1B4_4740 -1.2 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_4485 -1.2 -0.9 membrane protein, putative compare
Pf1N1B4_2021 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_4446 -1.2 -2.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_591 -1.2 -2.3 Aldose 1-epimerase compare
Pf1N1B4_3170 -1.2 -5.8 Peptide chain release factor RF-3 compare
Pf1N1B4_1468 -1.2 -7.8 InaA protein compare
Pf1N1B4_5768 -1.2 -2.5 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_4750 -1.2 -5.2 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf1N1B4_5135 -1.2 -2.8 Transcriptional regulator, TetR family compare
Pf1N1B4_3981 -1.2 -1.9 Predicted carboxypeptidase compare
Pf1N1B4_843 -1.2 -3.5 Transcriptional regulator, LysR family compare
Pf1N1B4_4119 -1.2 -1.9 dioxygenase compare
Pf1N1B4_1059 -1.2 -2.3 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4177 -1.2 -1.6 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_1581 -1.2 -2.2 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_3325 -1.2 -1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2642 -1.2 -1.8 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_2224 -1.2 -1.1 FIG00953390: hypothetical protein compare
Pf1N1B4_1146 -1.2 -5.4 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Pf1N1B4_4640 -1.2 -3.3 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5737 -1.2 -1.3 Nitrate/nitrite transporter compare
Pf1N1B4_5797 -1.1 -2.2 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_3703 -1.1 -2.3 NLP/P60 family protein compare
Pf1N1B4_780 -1.1 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4511 -1.1 -2.8 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) compare
Pf1N1B4_5242 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_1588 -1.1 -4.0 hypothetical protein compare
Pf1N1B4_3636 -1.1 -1.7 FIG00953562: hypothetical protein compare
Pf1N1B4_4549 -1.1 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_163 -1.1 -2.7 ADP-ribosylglycohydrolase compare
Pf1N1B4_2858 -1.1 -6.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4516 -1.1 -2.0 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_1311 -1.1 -2.9 Probable transmembrane protein compare
Pf1N1B4_1211 -1.1 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_34 -1.1 -1.9 Xanthine permease compare
Pf1N1B4_2975 -1.1 -1.0 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_919 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_5255 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_1034 -1.1 -2.9 hypothetical protein compare
Pf1N1B4_1386 -1.1 -2.4 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_629 -1.1 -1.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_204 -1.1 -2.6 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_1317 -1.1 -2.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_1329 -1.1 -4.0 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_4582 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_3729 -1.0 -1.6 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2734 -1.0 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_202 -1.0 -2.3 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_3775 -1.0 -1.2 FIG00956876: hypothetical protein compare
Pf1N1B4_4187 -1.0 -2.8 Probable signal peptide protein compare
Pf1N1B4_5877 -1.0 -2.4 FIG00967533: hypothetical protein compare
Pf1N1B4_1750 -1.0 -1.9 Death on curing protein, Doc toxin compare
Pf1N1B4_767 -1.0 -2.9 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_3546 -1.0 -1.6 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_322 -1.0 -2.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_817 -1.0 -2.2 FIG00955104: hypothetical protein compare
Pf1N1B4_387 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5047 -1.0 -3.7 Integral membrane protein TerC compare
Pf1N1B4_4951 -1.0 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5061 -1.0 -2.3 Valyl-tRNA synthetase compare
Pf1N1B4_2792 -1.0 -2.6 FIG00953454: hypothetical protein compare
Pf1N1B4_602 -1.0 -1.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_1864 -1.0 -4.4 Methionine ABC transporter substrate-binding protein compare
Pf1N1B4_5577 -1.0 -2.3 twitching motility protein PilG compare
Pf1N1B4_799 -1.0 -0.9 hypothetical protein compare
Pf1N1B4_4127 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_649 -1.0 -2.0 Small-conductance mechanosensitive channel compare
Pf1N1B4_5365 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_1011 -1.0 -3.1 ribosomal subunit interface protein, putative compare
Pf1N1B4_5787 -1.0 -3.0 Gifsy-2 prophage protein compare
Pf1N1B4_5249 -1.0 -2.4 Outer membrane protein A precursor compare
Pf1N1B4_4106 -1.0 -2.0 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_4659 -1.0 -1.0 Putative outer membrane lipoprotein compare
Pf1N1B4_2768 -1.0 -2.7 DNA repair protein RadA compare
Pf1N1B4_3855 -1.0 -2.4 Chromosome partition protein smc compare
Pf1N1B4_5834 -1.0 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_2035 -1.0 -2.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_3814 -1.0 -2.6 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) compare
Pf1N1B4_4156 -1.0 -1.4 putative secreted protein compare
Pf1N1B4_550 -1.0 -2.9 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Pf1N1B4_511 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_4671 -1.0 -1.8 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1366 -0.9 -2.1 FMN-dependent NADH-azoreductase compare
Pf1N1B4_623 -0.9 -1.3 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_4561 -0.9 -2.6 Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) compare
Pf1N1B4_4506 -0.9 -1.8 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_618 -0.9 -3.0 Acetyl-CoA carboxylase alpha subunit compare
Pf1N1B4_2484 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_344 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4533 -0.9 -1.9 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5906 -0.9 -1.8 Esterase/lipase compare
Pf1N1B4_2106 -0.9 -1.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4372 -0.9 -1.5 Galactitol utilization operon repressor compare
Pf1N1B4_3895 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1544 -0.9 -3.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1444 -0.9 -2.7 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf1N1B4_2102 -0.9 -0.9 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens FW300-N1B4

For stress Fusidic acid sodium salt across organisms