Culturing: pseudo1_N1B4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 26 (C), shaken=orbital
| Pathway | #Steps | #Present | #Specific |
|---|
| L-serine degradation | 3 | 3 | 3 |
| adenosine nucleotides degradation III | 1 | 1 | 1 |
| L-cysteine degradation II | 3 | 3 | 2 |
| D-serine degradation | 3 | 3 | 2 |
| L-tryptophan degradation II (via pyruvate) | 3 | 2 | 2 |
| glycine betaine degradation III | 7 | 7 | 3 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 2 |
| glycine betaine degradation I | 8 | 6 | 3 |
| glycine degradation | 3 | 3 | 1 |
| L-methionine biosynthesis II | 6 | 4 | 2 |
| pyruvate fermentation to acetate V | 3 | 2 | 1 |
| pyruvate fermentation to acetate VI | 3 | 1 | 1 |
| L-mimosine degradation | 8 | 4 | 2 |
| dTDP-N-acetylthomosamine biosynthesis | 4 | 2 | 1 |
| dTDP-β-D-fucofuranose biosynthesis | 4 | 2 | 1 |
| dTDP-N-acetylviosamine biosynthesis | 4 | 2 | 1 |
| dTDP-6-deoxy-α-D-allose biosynthesis | 4 | 2 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 2 |
| dTDP-β-L-rhamnose biosynthesis | 5 | 5 | 1 |
| adipate degradation | 5 | 5 | 1 |
| octane oxidation | 5 | 4 | 1 |
| adipate biosynthesis | 5 | 4 | 1 |
| dTDP-4-O-demethyl-β-L-noviose biosynthesis | 5 | 3 | 1 |
| dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis | 5 | 2 | 1 |
| dTDP-3-acetamido-α-D-fucose biosynthesis | 5 | 2 | 1 |
| dTDP-α-D-mycaminose biosynthesis | 5 | 2 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 4 | 1 |
| dTDP-L-daunosamine biosynthesis | 6 | 3 | 1 |
| dTDP-sibirosamine biosynthesis | 6 | 3 | 1 |
| dTDP-D-desosamine biosynthesis | 6 | 2 | 1 |
| dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis | 6 | 2 | 1 |
| dTDP-β-L-olivose biosynthesis | 7 | 3 | 1 |
| dTDP-β-L-digitoxose biosynthesis | 7 | 3 | 1 |
| incomplete reductive TCA cycle | 7 | 3 | 1 |
| dTDP-β-L-mycarose biosynthesis | 7 | 2 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 12 | 2 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 3 |
| dTDP-β-L-4-epi-vancosamine biosynthesis | 8 | 3 | 1 |
| dTDP-β-L-megosamine biosynthesis | 8 | 3 | 1 |
| TCA cycle V (2-oxoglutarate synthase) | 9 | 7 | 1 |
| TCA cycle II (plants and fungi) | 9 | 6 | 1 |
| dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis | 9 | 5 | 1 |
| dTDP-α-D-forosamine biosynthesis | 9 | 3 | 1 |
| tunicamycin biosynthesis | 9 | 2 | 1 |
| TCA cycle I (prokaryotic) | 10 | 8 | 1 |
| glycolysis V (Pyrococcus) | 10 | 7 | 1 |
| TCA cycle III (animals) | 10 | 6 | 1 |
| anaerobic energy metabolism (invertebrates, mitochondrial) | 10 | 4 | 1 |
| superpathway of enterobacterial common antigen biosynthesis | 10 | 3 | 1 |
| O-antigen building blocks biosynthesis (E. coli) | 11 | 10 | 1 |
| glycolysis II (from fructose 6-phosphate) | 11 | 9 | 1 |
| reductive TCA cycle I | 11 | 6 | 1 |
| superpathway of glyoxylate bypass and TCA | 12 | 10 | 1 |
| reductive TCA cycle II | 12 | 5 | 1 |
| gluconeogenesis I | 13 | 11 | 1 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 21 | 2 |
| glycolysis I (from glucose 6-phosphate) | 13 | 10 | 1 |
| superpathway of glycolysis and the Entner-Doudoroff pathway | 17 | 14 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 8 | 1 |
| superpathway of hexitol degradation (bacteria) | 18 | 11 | 1 |
| gluconeogenesis II (Methanobacterium thermoautotrophicum) | 18 | 9 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 15 | 1 |
| hexitol fermentation to lactate, formate, ethanol and acetate | 19 | 14 | 1 |
| methylaspartate cycle | 19 | 9 | 1 |
| superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis | 19 | 5 | 1 |
| superpathway of novobiocin biosynthesis | 19 | 4 | 1 |
| superpathway of erythromycin biosynthesis | 19 | 2 | 1 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 17 | 1 |
| superpathway of N-acetylneuraminate degradation | 22 | 13 | 1 |
| superpathway of megalomicin A biosynthesis | 22 | 3 | 1 |
| superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis | 23 | 5 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 20 | 2 |
| superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis | 33 | 12 | 1 |