Experiment set4IT050 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Fusidic acid sodium salt 0.0625 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2048 -3.3 -2.2 hypothetical protein compare
Pf1N1B4_2885 -3.3 -2.2 Paraquat-inducible protein A compare
Pf1N1B4_3667 -3.0 -8.0 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1641 -3.0 -8.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_3093 -3.0 -1.9 Outer membrane protein H precursor compare
Pf1N1B4_3246 -2.9 -2.8 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_1234 -2.8 -4.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3775 -2.8 -3.1 FIG00956876: hypothetical protein compare
Pf1N1B4_2209 -2.6 -8.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1441 -2.6 -11.6 Putative esterase, FIGfam005057 compare
Pf1N1B4_3833 -2.5 -8.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3668 -2.5 -7.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_3906 -2.4 -5.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3817 -2.4 -5.0 FIG008443: hypothetical protein compare
Pf1N1B4_327 -2.3 -1.5 hypothetical protein compare
Pf1N1B4_1872 -2.2 -5.3 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_1869 -2.2 -5.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_5425 -2.2 -3.0 DNA-binding protein HU-beta compare
Pf1N1B4_1504 -2.2 -2.7 Acyl carrier protein compare
Pf1N1B4_2886 -2.1 -9.1 Paraquat-inducible protein B compare
Pf1N1B4_1340 -2.1 -2.7 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_1462 -2.1 -11.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1916 -2.1 -2.3 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_974 -2.0 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1317 -2.0 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_188 -2.0 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2884 -2.0 -4.5 Paraquat-inducible protein A compare
Pf1N1B4_3388 -2.0 -8.9 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf1N1B4_2917 -2.0 -7.2 FIG140336: TPR domain protein compare
Pf1N1B4_388 -1.9 -5.7 OmpA family protein compare
Pf1N1B4_1619 -1.8 -7.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2223 -1.8 -7.7 FIG006231: RNA-binding protein compare
Pf1N1B4_3582 -1.8 -2.8 C-methyltransferase compare
Pf1N1B4_2106 -1.8 -1.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1581 -1.8 -3.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_866 -1.7 -1.4 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_4517 -1.7 -3.2 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_3166 -1.7 -9.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3143 -1.7 -2.2 RecA protein compare
Pf1N1B4_623 -1.7 -2.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3816 -1.7 -5.9 FIG139976: hypothetical protein compare
Pf1N1B4_4397 -1.7 -2.9 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4437 -1.7 -3.7 hypothetical protein compare
Pf1N1B4_1870 -1.7 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2568 -1.6 -2.8 Translation elongation factor Tu compare
Pf1N1B4_419 -1.6 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_2105 -1.6 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1180 -1.6 -1.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_5829 -1.6 -2.4 FIG005107: hypothetical protein compare
Pf1N1B4_2874 -1.6 -2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5813 -1.5 -2.1 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_175 -1.5 -2.2 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5824 -1.5 -3.5 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_3815 -1.5 -4.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_5331 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_3936 -1.5 -2.5 Transcriptional regulator, LysR family compare
Pf1N1B4_1153 -1.5 -3.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2718 -1.5 -4.8 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_2479 -1.5 -1.9 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5724 -1.4 -2.7 High-affinity iron permease compare
Pf1N1B4_2436 -1.4 -4.1 FIG00953563: hypothetical protein compare
Pf1N1B4_3368 -1.4 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4392 -1.4 -3.6 MocE compare
Pf1N1B4_2037 -1.4 -2.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_799 -1.4 -2.1 hypothetical protein compare
Pf1N1B4_389 -1.4 -4.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3002 -1.4 -3.2 hypothetical protein compare
Pf1N1B4_1782 -1.3 -2.1 hypothetical protein compare
Pf1N1B4_3751 -1.3 -1.9 FIG00953060: hypothetical protein compare
Pf1N1B4_4882 -1.3 -4.0 Transcriptional regulator MexT compare
Pf1N1B4_4740 -1.3 -2.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3325 -1.3 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_5822 -1.3 -4.7 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B compare
Pf1N1B4_3538 -1.3 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_1544 -1.3 -4.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2407 -1.2 -4.1 FIG00953367: hypothetical protein compare
Pf1N1B4_5827 -1.2 -2.5 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_3590 -1.2 -5.2 hypothetical protein compare
Pf1N1B4_4212 -1.2 -2.1 Gfa-like protein compare
Pf1N1B4_5695 -1.2 -2.8 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_4523 -1.2 -2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4422 -1.2 -1.5 ABC transporter amino acid-binding protein compare
Pf1N1B4_4979 -1.2 -2.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_2453 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_5330 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_5284 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_2709 -1.1 -2.4 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_823 -1.1 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1540 -1.1 -2.3 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_2721 -1.1 -6.2 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_2645 -1.1 -3.2 FIG000875: Thioredoxin domain-containing protein EC-YbbN compare
Pf1N1B4_5760 -1.1 -2.6 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4952 -1.1 -1.8 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_1837 -1.1 -1.3 Osmotically inducible protein C compare
Pf1N1B4_1620 -1.1 -3.8 Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase compare
Pf1N1B4_1013 -1.1 -5.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
Pf1N1B4_3750 -1.1 -1.6 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_72 -1.1 -1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_3895 -1.1 -2.9 hypothetical protein compare
Pf1N1B4_5446 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_5359 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_5645 -1.0 -2.2 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_3591 -1.0 -5.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_564 -1.0 -2.2 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_855 -1.0 -2.3 FIG021952: putative membrane protein compare
Pf1N1B4_4666 -1.0 -2.9 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_2283 -1.0 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_967 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_204 -1.0 -2.3 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_550 -1.0 -2.7 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Pf1N1B4_1052 -1.0 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2005 -1.0 -1.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4509 -1.0 -1.7 Aldose 1-epimerase compare
Pf1N1B4_4494 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2776 -1.0 -2.1 Transcriptional regulator, GntR family compare
Pf1N1B4_4368 -1.0 -2.4 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_441 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2867 -1.0 -2.6 Hemin ABC transporter, permease protein compare
Pf1N1B4_3147 -1.0 -4.7 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_3170 -1.0 -5.3 Peptide chain release factor RF-3 conserved
Pf1N1B4_4516 -1.0 -2.1 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_5133 -1.0 -2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_2640 -1.0 -2.8 FIG003461: hypothetical protein compare
Pf1N1B4_2228 -1.0 -2.5 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_1311 -1.0 -2.9 Probable transmembrane protein compare
Pf1N1B4_890 -1.0 -1.8 DNA recombination and repair protein RecO compare
Pf1N1B4_5023 -0.9 -2.2 Alkylated DNA repair protein AlkB compare
Pf1N1B4_5508 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4166 -0.9 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_1263 -0.9 -1.9 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_74 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_198 -0.9 -2.0 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_5278 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_3993 -0.9 -1.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_1617 -0.9 -4.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5028 -0.9 -3.7 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf1N1B4_3273 -0.9 -1.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_544 -0.9 -2.0 Small-conductance mechanosensitive channel compare
Pf1N1B4_3809 -0.9 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_5451 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1749 -0.9 -1.1 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4667 -0.9 -2.3 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_883 -0.9 -1.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5838 -0.9 -1.8 FIG00956589: hypothetical protein compare
Pf1N1B4_5340 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5063 -0.9 -2.1 Phosphoribosyl transferase domain protein compare
Pf1N1B4_3782 -0.9 -1.7 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_5684 -0.9 -2.3 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_4436 -0.9 -2.2 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_2856 -0.9 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5152 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_1194 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_1579 -0.8 -1.7 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_2339 -0.8 -1.7 COG1872 compare
Pf1N1B4_5923 -0.8 -1.8 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_934 -0.8 -3.2 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_3445 -0.8 -1.2 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3407 -0.8 -2.8 Sterol desaturase, putative compare
Pf1N1B4_5464 -0.8 -1.9 Cointegrate resolution protein T compare
Pf1N1B4_3036 -0.8 -1.7 Chemotaxis signal transduction protein compare
Pf1N1B4_662 -0.8 -1.7 FIG00955875: hypothetical protein compare
Pf1N1B4_2744 -0.8 -3.8 Transcriptional regulator, IclR family compare
Pf1N1B4_4250 -0.8 -1.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1703 -0.8 -2.0 Methionine ABC transporter permease protein compare
Pf1N1B4_1276 -0.8 -1.6 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_2858 -0.8 -5.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_813 -0.8 -3.9 hypothetical protein compare
Pf1N1B4_3518 -0.8 -1.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1906 -0.8 -2.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3907 -0.8 -1.2 FIG00953287: hypothetical protein compare
Pf1N1B4_4644 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4403 -0.8 -1.3 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_4481 -0.8 -1.4 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_4921 -0.8 -1.7 Haloacid dehalogenase, type II compare
Pf1N1B4_1329 -0.8 -3.4 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_78 -0.8 -1.8 FIG00956937: hypothetical protein compare
Pf1N1B4_1284 -0.8 -2.5 Flp pilus assembly protein TadG compare
Pf1N1B4_2400 -0.8 -1.2 FIG00955006: hypothetical protein compare
Pf1N1B4_4669 -0.8 -1.4 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_5357 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_267 -0.8 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_4260 -0.8 -2.2 FIG00965772: hypothetical protein compare
Pf1N1B4_539 -0.8 -1.0 Transcriptional regulators compare
Pf1N1B4_5777 -0.8 -1.4 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_5306 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5255 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5851 -0.8 -1.7 Transcriptional regulator, RpiR family compare
Pf1N1B4_5108 -0.8 -3.1 Capsule biosynthesis protein capA compare
Pf1N1B4_2859 -0.8 -5.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1675 -0.8 -1.6 Transcriptional regulator compare
Pf1N1B4_1871 -0.8 -2.8 Zinc uptake regulation protein ZUR compare
Pf1N1B4_320 -0.8 -2.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_3279 -0.8 -0.9 putative membrane protein compare
Pf1N1B4_10 -0.8 -2.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf1N1B4_1236 -0.8 -3.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2360 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_1248 -0.8 -2.2 Probable short-chain dehydrogenase compare
Pf1N1B4_2507 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_2695 -0.8 -1.1 Rare lipoprotein A precursor compare
Pf1N1B4_5624 -0.8 -1.4 Lipase precursor (EC 3.1.1.3) compare


Specific Phenotypes

For 8 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens FW300-N1B4

For stress Fusidic acid sodium salt across organisms