Experiment set4IT049 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Aluminum chloride hydrate 2.5 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1180 -3.2 -2.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3696 -2.8 -13.8 FIG00955360: hypothetical protein compare
Pf1N1B4_723 -2.7 -12.2 two-component system sensor protein conserved
Pf1N1B4_448 -2.7 -2.2 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_3997 -2.7 -4.1 Uncharacterized protein YtfM precursor compare
Pf1N1B4_724 -2.4 -3.7 DNA-binding response regulator ColR compare
Pf1N1B4_2178 -2.4 -2.2 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_3998 -2.3 -4.7 putative exported protein compare
Pf1N1B4_1782 -2.2 -2.8 hypothetical protein compare
Pf1N1B4_3143 -2.1 -2.0 RecA protein compare
Pf1N1B4_3074 -2.1 -3.1 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_1846 -2.1 -7.9 Protein tyrosine/serine phosphatase conserved
Pf1N1B4_2339 -2.0 -2.6 COG1872 compare
Pf1N1B4_3168 -2.0 -3.0 AmpG permease compare
Pf1N1B4_339 -1.9 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2105 -1.9 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3775 -1.9 -2.8 FIG00956876: hypothetical protein compare
Pf1N1B4_1540 -1.8 -4.1 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_2284 -1.7 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4723 -1.7 -2.9 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_4335 -1.6 -2.4 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_2208 -1.6 -6.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_4355 -1.5 -2.2 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_337 -1.5 -4.2 O-antigen export system permease protein RfbD compare
Pf1N1B4_1234 -1.5 -4.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5724 -1.5 -2.8 High-affinity iron permease compare
Pf1N1B4_4132 -1.5 -2.4 Mobile element protein compare
Pf1N1B4_5383 -1.5 -7.5 hypothetical protein compare
Pf1N1B4_336 -1.4 -9.9 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_5829 -1.4 -2.3 FIG005107: hypothetical protein compare
Pf1N1B4_648 -1.4 -12.3 Outer membrane porin, OprD family compare
Pf1N1B4_4523 -1.4 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_909 -1.4 -1.9 Ketosteroid isomerase-related protein compare
Pf1N1B4_5906 -1.3 -3.3 Esterase/lipase compare
Pf1N1B4_3343 -1.3 -4.4 membrane protein, putative compare
Pf1N1B4_3935 -1.3 -2.9 Major facilitator family transporter compare
Pf1N1B4_4522 -1.3 -2.4 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_4851 -1.3 -2.5 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_758 -1.3 -3.4 Bacterioferritin compare
Pf1N1B4_3703 -1.3 -2.3 NLP/P60 family protein compare
Pf1N1B4_366 -1.3 -6.3 FIG00954136: hypothetical protein compare
Pf1N1B4_3127 -1.3 -3.4 Phage tail/DNA circulation protein compare
Pf1N1B4_5624 -1.3 -2.9 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_56 -1.2 -2.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_866 -1.2 -1.5 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_5239 -1.2 -2.8 hypothetical protein compare
Pf1N1B4_1247 -1.2 -2.7 transcriptional regulator, MerR family compare
Pf1N1B4_2082 -1.2 -3.2 Uncharacterized protein ImpA compare
Pf1N1B4_3025 -1.2 -3.5 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_2335 -1.2 -3.7 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_4381 -1.2 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_4717 -1.2 -1.5 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_5302 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_647 -1.2 -5.7 hypothetical protein compare
Pf1N1B4_5255 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_3273 -1.2 -1.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_5018 -1.2 -2.0 FIG00962345: hypothetical protein compare
Pf1N1B4_875 -1.2 -1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_382 -1.2 -5.2 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily conserved
Pf1N1B4_4275 -1.2 -2.5 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_5059 -1.1 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_3305 -1.1 -2.4 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4517 -1.1 -2.4 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_2270 -1.1 -3.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_2874 -1.1 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_722 -1.1 -1.8 SAM-dependent methyltransferases compare
Pf1N1B4_1837 -1.1 -1.8 Osmotically inducible protein C compare
Pf1N1B4_507 -1.1 -1.5 FIG00956448: hypothetical protein compare
Pf1N1B4_967 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_5722 -1.1 -2.0 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3408 -1.1 -1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_3833 -1.1 -5.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1614 -1.1 -1.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_3906 -1.1 -2.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3559 -1.1 -7.5 Aromatic amino acid transport protein AroP compare
Pf1N1B4_725 -1.1 -3.0 PAP2 superfamily protein compare
Pf1N1B4_165 -1.1 -2.2 FIG00638667: hypothetical protein compare
Pf1N1B4_3142 -1.1 -3.0 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_3750 -1.1 -2.3 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_242 -1.1 -3.5 Glutathione-regulated potassium-efflux system protein KefB compare
Pf1N1B4_2873 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_255 -1.0 -3.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_5560 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5219 -1.0 -2.0 tRNA-Gly-CCC compare
Pf1N1B4_6036 -1.0 -1.9 FIG00953132: hypothetical protein compare
Pf1N1B4_5649 -1.0 -2.1 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3939 -1.0 -2.7 FIG00953489: hypothetical protein compare
Pf1N1B4_2763 -1.0 -2.6 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) compare
Pf1N1B4_4926 -1.0 -2.9 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
Pf1N1B4_4422 -1.0 -1.8 ABC transporter amino acid-binding protein compare
Pf1N1B4_2776 -1.0 -1.8 Transcriptional regulator, GntR family compare
Pf1N1B4_4980 -1.0 -1.6 putative lipoprotein compare
Pf1N1B4_4313 -1.0 -3.2 putative membrane protein compare
Pf1N1B4_1034 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_3200 -1.0 -1.5 Outer membrane lipoprotein compare
Pf1N1B4_76 -1.0 -2.2 ATP binding protein compare
Pf1N1B4_1708 -1.0 -2.3 Efflux transporter, RND family, MFP subunit compare
Pf1N1B4_4999 -1.0 -2.7 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_476 -1.0 -1.9 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_2507 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_4314 -1.0 -4.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD compare
Pf1N1B4_2764 -1.0 -3.1 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) compare
Pf1N1B4_340 -1.0 -4.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_1125 -1.0 -3.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf1N1B4_373 -1.0 -2.2 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_1402 -0.9 -2.6 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_2163 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_5899 -0.9 -1.6 FIG00954746: hypothetical protein compare
Pf1N1B4_3697 -0.9 -3.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_828 -0.9 -3.5 Multicopper oxidase compare
Pf1N1B4_335 -0.9 -6.2 Glycosyltransferase compare
Pf1N1B4_5577 -0.9 -1.5 twitching motility protein PilG compare
Pf1N1B4_1317 -0.9 -2.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_3504 -0.9 -2.1 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_53 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_3753 -0.9 -3.4 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3818 -0.9 -1.3 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_4437 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_1713 -0.9 -3.1 Glutamate transport membrane-spanning protein compare
Pf1N1B4_4107 -0.9 -1.5 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_602 -0.9 -2.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_3887 -0.9 -2.3 CAAX amino terminal protease family protein compare
Pf1N1B4_578 -0.9 -2.3 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3809 -0.9 -2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4952 -0.9 -1.7 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_525 -0.9 -2.2 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_3386 -0.9 -2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_4017 -0.9 -1.6 DNA-binding heavy metal response regulator compare
Pf1N1B4_5843 -0.9 -2.0 phospholipase/carboxylesterase family protein compare
Pf1N1B4_3889 -0.9 -0.8 hypothetical protein compare
Pf1N1B4_5095 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_4624 -0.9 -2.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf1N1B4_4491 -0.9 -2.5 ABC transporter permease protein compare
Pf1N1B4_5348 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_2609 -0.9 -6.3 Catalase (EC 1.11.1.6) compare
Pf1N1B4_4436 -0.9 -1.6 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4533 -0.9 -1.8 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_239 -0.9 -2.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_1893 -0.9 -2.8 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf1N1B4_5311 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_3195 -0.9 -3.8 hydrolase, putative compare
Pf1N1B4_718 -0.9 -3.8 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_231 -0.9 -2.4 Sensor histidine kinase compare
Pf1N1B4_5278 -0.9 -0.7 hypothetical protein compare
Pf1N1B4_1386 -0.9 -2.0 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_5266 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_5554 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_3723 -0.8 -1.3 FIG00957314: hypothetical protein compare
Pf1N1B4_5864 -0.8 -1.4 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_2195 -0.8 -2.3 Small-conductance mechanosensitive channel compare
Pf1N1B4_6024 -0.8 -2.1 FIG00953292: hypothetical protein compare
Pf1N1B4_4176 -0.8 -1.7 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_3547 -0.8 -0.8 DNA-binding response regulator compare
Pf1N1B4_1328 -0.8 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2694 -0.8 -5.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf1N1B4_5387 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_4509 -0.8 -1.5 Aldose 1-epimerase compare
Pf1N1B4_1329 -0.8 -3.6 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1307 -0.8 -1.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3259 -0.8 -2.5 FIG00956006: hypothetical protein compare
Pf1N1B4_16 -0.8 -1.9 Cys regulon transcriptional activator CysB compare
Pf1N1B4_1827 -0.8 -2.5 FIG00953482: hypothetical protein compare
Pf1N1B4_4992 -0.8 -2.4 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_3468 -0.8 -1.2 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_6028 -0.8 -2.6 FIG00954052: hypothetical protein compare
Pf1N1B4_2783 -0.8 -1.4 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2366 -0.8 -1.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_5425 -0.8 -1.2 DNA-binding protein HU-beta compare
Pf1N1B4_2712 -0.8 -2.7 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_1660 -0.8 -2.0 FIG00953324: hypothetical protein compare
Pf1N1B4_359 -0.8 -1.8 GGDEF domain protein compare
Pf1N1B4_5507 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_3711 -0.8 -3.7 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_541 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_5498 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_224 -0.8 -1.3 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_4485 -0.8 -1.1 membrane protein, putative compare
Pf1N1B4_4846 -0.8 -3.1 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_2492 -0.8 -2.3 FIG00954771: hypothetical protein compare
Pf1N1B4_4159 -0.8 -2.2 FIG00955149: hypothetical protein compare
Pf1N1B4_617 -0.8 -1.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3108 -0.8 -3.1 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf1N1B4_5446 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_1300 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_521 -0.8 -3.3 ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing compare
Pf1N1B4_5464 -0.8 -1.7 Cointegrate resolution protein T compare
Pf1N1B4_430 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_399 -0.8 -1.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_5830 -0.8 -2.2 FIG023677: hypothetical protein compare
Pf1N1B4_5777 -0.8 -2.3 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1126 -0.8 -1.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_4699 -0.8 -1.6 Multidrug translocase MdfA compare
Pf1N1B4_2296 -0.8 -2.0 FIG00350678: hypothetical protein compare
Pf1N1B4_4776 -0.8 -1.3 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_3217 -0.8 -2.2 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf1N1B4_2458 -0.8 -1.7 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_795 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_4990 -0.8 -1.5 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_1059 -0.8 -1.8 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_717 -0.7 -3.3 Iron-regulated protein A precursor compare


Specific Phenotypes

For 5 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N1B4

For stress Aluminum chloride hydrate across organisms