Experiment set4IT049 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Aluminum chloride hydrate 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_5926 +2.3 17.4 hypothetical protein compare
Pf1N1B4_5924 +2.3 16.0 hypothetical protein compare
Pf1N1B4_1462 +2.2 18.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5925 +2.2 13.5 hypothetical protein compare
Pf1N1B4_2380 +2.0 15.9 Cytochrome B561 compare
Pf1N1B4_2381 +2.0 14.9 Protein yceI precursor compare
Pf1N1B4_2486 +1.9 3.4 hypothetical protein compare
Pf1N1B4_5927 +1.9 16.8 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1370 +1.8 3.1 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_291 +1.6 10.4 Major outer membrane lipoprotein I compare
Pf1N1B4_2490 +1.6 8.5 Biotin synthesis protein BioC compare
Pf1N1B4_1469 +1.5 13.4 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_2491 +1.5 5.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_761 +1.4 3.2 FIG00954879: hypothetical protein compare
Pf1N1B4_932 +1.4 2.3 FIG00963370: hypothetical protein compare
Pf1N1B4_4035 +1.4 2.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2854 +1.4 4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_2791 +1.4 3.0 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2668 +1.3 9.7 DedA protein compare
Pf1N1B4_3153 +1.3 2.9 hypothetical protein compare
Pf1N1B4_292 +1.3 12.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_5817 +1.3 2.7 Decarboxylase family protein compare
Pf1N1B4_5708 +1.3 3.6 Transcriptional regulator, TetR family compare
Pf1N1B4_5447 +1.3 2.4 hypothetical protein compare
Pf1N1B4_2377 +1.3 6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2488 +1.2 6.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2247 +1.2 2.3 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_1749 +1.2 2.2 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_290 +1.2 10.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2526 +1.2 10.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_407 +1.2 1.8 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_2489 +1.2 3.5 Biotin synthesis protein BioH compare
Pf1N1B4_3764 +1.2 2.6 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_2487 +1.2 6.7 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3184 +1.2 2.7 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4590 +1.1 2.3 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2917 +1.1 7.4 FIG140336: TPR domain protein compare
Pf1N1B4_731 +1.1 2.9 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_2724 +1.1 6.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_4029 +1.1 2.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1619 +1.1 7.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3147 +1.1 5.6 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_4349 +1.1 2.9 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_5109 +1.1 2.0 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_3830 +1.0 3.3 CrfX protein compare
Pf1N1B4_3169 +1.0 3.5 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf1N1B4_3134 +1.0 2.0 probable tail fiber assembly-like protein compare
Pf1N1B4_4731 +1.0 2.2 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_974 +1.0 3.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3831 +1.0 4.7 CmpX compare
Pf1N1B4_751 +1.0 1.5 hypothetical protein compare
Pf1N1B4_1892 +1.0 3.4 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_4957 +1.0 1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_1781 +1.0 2.1 hypothetical protein compare
Pf1N1B4_5820 +1.0 2.4 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_3170 +1.0 6.3 Peptide chain release factor RF-3 compare
Pf1N1B4_5435 +1.0 1.9 hypothetical protein compare
Pf1N1B4_3499 +1.0 1.3 hypothetical protein compare
Pf1N1B4_3549 +1.0 2.0 YciL protein compare
Pf1N1B4_1334 +1.0 1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_2947 +1.0 4.4 Restriction endonuclease compare
Pf1N1B4_2958 +0.9 1.9 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_124 +0.9 1.9 Mechanosensitive ion channel compare
Pf1N1B4_4343 +0.9 1.8 hypothetical protein compare
Pf1N1B4_1695 +0.9 1.7 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_3229 +0.9 5.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5801 +0.9 2.0 hypothetical protein compare
Pf1N1B4_4429 +0.9 1.5 No significant database matches compare
Pf1N1B4_1458 +0.9 5.4 Probable transcription regulator Mig-14 compare
Pf1N1B4_2244 +0.9 1.6 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_5920 +0.9 2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_5512 +0.9 1.7 hypothetical protein compare
Pf1N1B4_5831 +0.9 2.5 SAM-dependent methyltransferases compare
Pf1N1B4_1439 +0.9 3.8 FIG00953138: hypothetical protein compare
Pf1N1B4_5112 +0.9 2.1 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2314 +0.9 2.0 FIG028932: hypothetical protein compare
Pf1N1B4_4612 +0.9 1.5 FIG00954117: hypothetical protein compare
Pf1N1B4_1475 +0.9 4.3 FIG00962376: hypothetical protein compare
Pf1N1B4_678 +0.9 5.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_4333 +0.9 1.6 hypothetical protein compare
Pf1N1B4_1441 +0.9 6.3 Putative esterase, FIGfam005057 compare
Pf1N1B4_2823 +0.9 1.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_2096 +0.9 1.8 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_3191 +0.9 1.5 FIG00953505: hypothetical protein compare
Pf1N1B4_2939 +0.9 4.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3722 +0.9 1.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4818 +0.9 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1464 +0.9 4.9 Glycosyl transferase compare
Pf1N1B4_547 +0.9 3.1 3-phosphoglycerate kinase compare
Pf1N1B4_5668 +0.9 1.9 Peptidase, U7 family compare
Pf1N1B4_5870 +0.9 1.8 VgrG protein compare
Pf1N1B4_1535 +0.9 2.5 hypothetical protein compare
Pf1N1B4_1154 +0.9 2.6 FIG00957702: hypothetical protein compare
Pf1N1B4_1279 +0.9 2.1 Flp pilus assembly protein TadB compare
Pf1N1B4_4366 +0.9 1.6 hypothetical protein compare
Pf1N1B4_2008 +0.9 5.8 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_4027 +0.9 0.8 hypothetical protein compare
Pf1N1B4_3435 +0.9 1.8 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_998 +0.9 3.4 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_384 +0.9 1.7 proteinase inhibitor compare
Pf1N1B4_5886 +0.9 1.8 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) compare
Pf1N1B4_3483 +0.8 3.5 Transcriptional regulatory protein PhoP compare
Pf1N1B4_5763 +0.8 1.9 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_441 +0.8 1.8 hypothetical protein compare
Pf1N1B4_2969 +0.8 6.7 ATPase, AFG1 family compare
Pf1N1B4_675 +0.8 2.1 hypothetical protein compare
Pf1N1B4_2545 +0.8 6.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_5261 +0.8 2.3 hypothetical protein compare
Pf1N1B4_1488 +0.8 2.2 hypothetical protein compare
Pf1N1B4_5576 +0.8 1.9 hypothetical protein compare
Pf1N1B4_1457 +0.8 5.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_4603 +0.8 1.5 hypothetical protein compare
Pf1N1B4_567 +0.8 1.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5859 +0.8 1.9 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_919 +0.8 1.4 hypothetical protein compare
Pf1N1B4_5972 +0.8 1.5 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_2127 +0.8 6.1 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf1N1B4_2432 +0.8 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3613 +0.8 1.6 hypothetical protein compare
Pf1N1B4_855 +0.8 2.3 FIG021952: putative membrane protein compare
Pf1N1B4_1122 +0.8 6.1 Outer membrane porin, OprD family compare
Pf1N1B4_4768 +0.8 3.1 hypothetical protein compare
Pf1N1B4_5858 +0.8 2.2 carboxyphosphonoenolpyruvate phosphonomutase, putative compare
Pf1N1B4_3814 +0.8 2.4 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) compare
Pf1N1B4_959 +0.8 6.4 Stringent starvation protein A compare
Pf1N1B4_5105 +0.8 1.6 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_3783 +0.8 1.8 FIG00958237: hypothetical protein compare
Pf1N1B4_3825 +0.8 1.9 FIG00959101: hypothetical protein compare
Pf1N1B4_2464 +0.8 2.1 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_2303 +0.8 5.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5282 +0.8 2.1 Phage protein compare
Pf1N1B4_4040 +0.8 1.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4873 +0.8 2.5 clavaldehyde dehydrogenase compare
Pf1N1B4_5242 +0.8 0.9 hypothetical protein compare
Pf1N1B4_4552 +0.8 2.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_4823 +0.8 1.7 Paraquat-inducible protein A compare
Pf1N1B4_3446 +0.8 1.3 Putative GTPases (G3E family) compare
Pf1N1B4_5650 +0.8 2.0 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_609 +0.8 1.9 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_5370 +0.8 1.3 hypothetical protein compare
Pf1N1B4_1293 +0.8 2.2 hypothetical protein compare
Pf1N1B4_5853 +0.7 1.9 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_4866 +0.7 1.4 hypothetical protein compare
Pf1N1B4_1115 +0.7 5.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_825 +0.7 1.2 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_5892 +0.7 1.9 FIG00961753: hypothetical protein compare
Pf1N1B4_328 +0.7 2.6 Glucosyltransferase (side chain biosynthesis) (EC 2.4.1.-) compare
Pf1N1B4_2527 +0.7 5.0 ApaG protein compare
Pf1N1B4_3824 +0.7 5.1 FIG137360: hypothetical protein compare
Pf1N1B4_5293 +0.7 1.9 hypothetical protein compare
Pf1N1B4_1889 +0.7 6.0 Fused spore maturation proteins A and B compare
Pf1N1B4_46 +0.7 2.3 Copper resistance protein C precursor compare
Pf1N1B4_4489 +0.7 2.0 Transcriptional regulator, LuxR family compare
Pf1N1B4_5224 +0.7 1.7 tRNA-Arg-CCT compare
Pf1N1B4_2884 +0.7 3.1 Paraquat-inducible protein A compare
Pf1N1B4_3625 +0.7 1.9 Flagellar synthesis regulator FleN compare
Pf1N1B4_5588 +0.7 1.6 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_3093 +0.7 1.6 Outer membrane protein H precursor compare
Pf1N1B4_2885 +0.7 3.3 Paraquat-inducible protein A compare
Pf1N1B4_4539 +0.7 1.5 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_13 +0.7 1.7 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_1545 +0.7 5.0 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_5804 +0.7 1.2 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_2858 +0.7 5.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2987 +0.7 2.3 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_4521 +0.7 2.0 Probable transmembrane protein compare
Pf1N1B4_4518 +0.7 1.6 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_1845 +0.7 1.6 FIG00954395: hypothetical protein compare
Pf1N1B4_31 +0.7 2.0 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_2749 +0.7 2.9 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf1N1B4_293 +0.7 2.9 hypothetical protein compare
Pf1N1B4_234 +0.7 2.2 hypothetical protein compare
Pf1N1B4_1612 +0.7 1.1 FIG00955429: hypothetical protein compare
Pf1N1B4_5660 +0.7 4.6 cis/trans isomerase compare
Pf1N1B4_973 +0.7 6.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_1335 +0.7 3.7 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_304 +0.7 0.8 Deoxyribonuclease TatD compare
Pf1N1B4_419 +0.7 1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_2144 +0.7 4.2 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_972 +0.7 6.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_2182 +0.7 2.9 Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18) compare
Pf1N1B4_4341 +0.7 1.6 hypothetical protein compare
Pf1N1B4_2356 +0.7 1.9 hypothetical protein compare
Pf1N1B4_5769 +0.7 1.0 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_54 +0.7 2.0 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_5862 +0.7 1.7 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD compare
Pf1N1B4_1887 +0.7 1.9 probable exported protein YPO0432 compare
Pf1N1B4_2102 +0.7 1.0 hypothetical protein compare
Pf1N1B4_3121 +0.7 2.4 FIG111678: IS, phage, Tn; Transposon-related functions compare
Pf1N1B4_5584 +0.7 1.9 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_211 +0.7 4.9 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf1N1B4_3275 +0.7 2.2 L-lysine permease compare
Pf1N1B4_5979 +0.7 1.5 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_2549 +0.7 4.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_739 +0.7 1.8 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_4023 +0.7 2.1 hypothetical protein compare
Pf1N1B4_4839 +0.7 1.4 lipoprotein compare
Pf1N1B4_5353 +0.7 2.2 hypothetical protein compare
Pf1N1B4_4104 +0.7 1.6 Probable transmembrane protein compare
Pf1N1B4_3111 +0.6 1.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare


Specific Phenotypes

For 5 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N1B4

For stress Aluminum chloride hydrate across organisms