Experiment set4IT049 for Methanococcus maripaludis S2

Compare to:

Formate McCas deepwell complete

200 most important genes:

  gene name fitness t score description  
MMP_RS06680 -8.2 -15.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -7.7 -19.2 hypothetical protein compare
MMP_RS05515 -7.1 -10.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06685 -6.9 -16.5 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01175 -6.8 -7.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06350 -6.4 -10.8 HesA/MoeB/ThiF family protein compare
MMP_RS01020 -6.3 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06400 -6.0 -3.6 4Fe-4S binding protein compare
MMP_RS03315 -6.0 -3.1 ferrous iron transport protein A compare
MMP_RS01500 -6.0 -4.3 CBS domain-containing protein compare
MMP_RS06345 -5.9 -12.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07845 -5.9 -6.2 LL-diaminopimelate aminotransferase compare
MMP_RS00305 -5.8 -3.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS03015 -5.6 -13.2 GTP 3' 8-cyclase MoaA compare
MMP_RS06715 -5.4 -21.3 cache domain-containing protein compare
MMP_RS06625 -5.4 -4.8 DNA primase compare
MMP_RS06285 -5.3 -4.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06295 -5.3 -11.3 methanogenesis marker 14 protein compare
MMP_RS06370 -5.3 -7.6 biotin synthase BioB compare
MMP_RS04685 -5.1 -6.0 DUF126 domain-containing protein compare
MMP_RS08820 -5.1 -10.9 hypothetical protein compare
MMP_RS01755 -5.1 -2.2 DUF2097 domain-containing protein compare
MMP_RS07005 -5.0 -1.5 4Fe-4S binding protein compare
MMP_RS06355 -5.0 -4.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08715 -5.0 -4.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01225 -4.9 -8.0 DUF5379 domain-containing protein compare
MMP_RS08300 -4.9 -2.5 metal-sulfur cluster assembly factor compare
MMP_RS03035 -4.8 -7.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04500 -4.8 -20.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS00685 -4.8 -8.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06630 -4.7 -2.0 UPF0058 family protein compare
MMP_RS08650 -4.7 -6.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06230 -4.7 -5.9 helix-turn-helix domain-containing protein compare
MMP_RS06705 -4.6 -8.1 formate/nitrite transporter family protein compare
MMP_RS04605 -4.6 -8.9 cobalt ECF transporter T component CbiQ compare
MMP_RS07635 -4.5 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01800 -4.4 -7.1 TIGR00303 family protein compare
MMP_RS01005 -4.4 -3.2 riboflavin synthase compare
MMP_RS08095 -4.4 -9.1 dethiobiotin synthase compare
MMP_RS08635 -4.3 -4.7 UbiA family prenyltransferase compare
MMP_RS08100 -4.3 -13.5 8-amino-7-oxononanoate synthase compare
MMP_RS06720 -4.3 -13.4 response regulator transcription factor compare
MMP_RS04775 -4.3 -7.2 adenosylhomocysteinase compare
MMP_RS00695 -4.2 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01325 -4.2 -4.1 dihydroneopterin aldolase family protein compare
MMP_RS07445 -4.2 -7.5 helix-turn-helix domain-containing protein compare
MMP_RS08460 -4.2 -4.4 proteasome-activating nucleotidase compare
MMP_RS07195 -4.1 -15.2 M20 family metallo-hydrolase compare
MMP_RS04585 -4.1 -11.8 AIR synthase related protein compare
MMP_RS08105 -4.1 -9.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS03600 -4.1 -5.0 triose-phosphate isomerase compare
MMP_RS07545 -4.1 -2.4 HTH domain-containing protein compare
MMP_RS04780 -4.1 -6.6 ribonuclease P compare
MMP_RS04890 -4.0 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07735 -4.0 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06340 -4.0 -11.1 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00895 -4.0 -9.3 hypothetical protein compare
MMP_RS06120 -4.0 -5.2 UPF0147 family protein compare
MMP_RS06270 -3.9 -10.2 TIGR00300 family protein compare
MMP_RS02900 -3.9 -1.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06895 -3.9 -2.7 selenocysteine-specific translation elongation factor compare
MMP_RS03400 -3.9 -4.2 archease compare
MMP_RS07645 -3.8 -14.0 aldehyde dehydrogenase family protein compare
MMP_RS03025 -3.8 -7.4 molybdenum cofactor guanylyltransferase compare
MMP_RS06475 -3.8 -6.7 FAD-dependent oxidoreductase compare
MMP_RS02240 -3.8 -5.4 methanogenesis marker 7 protein compare
MMP_RS02195 -3.8 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03640 -3.7 -7.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08645 -3.7 -14.2 UPF0179 family protein compare
MMP_RS03580 -3.7 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01795 -3.6 -3.3 methanogenesis marker 6 protein compare
MMP_RS04615 -3.6 -6.9 PDGLE domain-containing protein compare
MMP_RS06020 -3.6 -8.1 archaeoflavoprotein AfpA compare
MMP_RS02280 -3.6 -2.1 DUF211 domain-containing protein compare
MMP_RS00110 -3.5 -6.5 hypothetical protein compare
MMP_RS02875 -3.5 -17.6 chorismate pyruvate-lyase family protein compare
MMP_RS02355 -3.4 -5.7 30S ribosomal protein S27ae compare
MMP_RS08720 -3.4 -4.0 4Fe-4S binding protein compare
MMP_RS08790 -3.4 -4.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS04620 -3.4 -13.1 cobalt transporter CbiM compare
MMP_RS06885 -3.4 -5.6 50S ribosome-binding GTPase compare
MMP_RS02135 -3.3 -7.3 DUF5612 domain-containing protein compare
MMP_RS01985 -3.3 -12.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01380 -3.3 -6.9 PHP domain-containing protein compare
MMP_RS08745 -3.3 -10.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07380 -3.3 -3.9 transcription elongation factor Spt5 compare
MMP_RS09020 -3.3 -3.1 hypothetical protein compare
MMP_RS08435 -3.3 -5.1 Era-like GTP-binding protein compare
MMP_RS00300 -3.2 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07605 -3.2 -5.2 diadenylate cyclase compare
MMP_RS01220 -3.1 -10.1 hypothetical protein compare
MMP_RS00515 -3.1 -2.2 DUF655 domain-containing protein compare
MMP_RS06975 -3.1 -5.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06925 -3.1 -4.5 ribonuclease VapC4 compare
MMP_RS01265 -3.0 -2.7 hypothetical protein compare
MMP_RS02145 -3.0 -7.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS03155 -2.9 -13.0 precorrin-6A reductase compare
MMP_RS07580 -2.9 -4.0 DUF356 domain-containing protein compare
MMP_RS00295 -2.9 -5.7 gamma carbonic anhydrase family protein compare
MMP_RS03960 -2.8 -2.0 hypothetical protein compare
MMP_RS07630 -2.8 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS03445 -2.8 -2.3 methanogenesis marker 17 protein compare
MMP_RS07525 -2.8 -9.4 4Fe-4S binding protein compare
MMP_RS03435 -2.7 -4.2 ketol-acid reductoisomerase compare
MMP_RS01700 -2.7 -2.5 dihydroxy-acid dehydratase compare
MMP_RS01610 -2.7 -5.6 hypothetical protein compare
MMP_RS02345 -2.7 -5.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07730 -2.7 -3.5 pyruvate synthase subunit beta compare
MMP_RS05345 -2.7 -8.2 hypothetical protein compare
MMP_RS00115 -2.7 -16.2 radical SAM protein compare
MMP_RS01385 -2.7 -1.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07600 -2.6 -3.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07575 -2.6 -4.8 RNA ligase partner protein compare
MMP_RS05845 -2.6 -3.2 tRNA-intron lyase compare
MMP_RS08445 -2.5 -7.5 DUF2099 family protein compare
MMP_RS08210 -2.5 -4.5 phosphatidylglycerophosphatase A compare
MMP_RS05550 -2.5 -1.5 cation:proton antiporter compare
MMP_RS05920 -2.5 -1.4 50S ribosomal protein L37e compare
MMP_RS07200 -2.4 -8.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02165 -2.4 -13.9 tRNA-dihydrouridine synthase compare
MMP_RS08440 -2.4 -4.2 cell division protein SepF compare
MMP_RS06315 -2.3 -2.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01725 -2.3 -5.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS06215 -2.2 -6.5 30S ribosomal protein S6e compare
MMP_RS05430 -2.2 -4.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS07390 -2.2 -2.4 cell division protein FtsZ compare
MMP_RS07755 -2.2 -2.3 DUF555 domain-containing protein compare
MMP_RS06105 -2.1 -11.0 hydrogenase maturation peptidase HycI compare
MMP_RS02010 -2.1 -12.5 PHP domain-containing protein compare
MMP_RS06930 -2.1 -12.6 MBL fold metallo-hydrolase compare
MMP_RS07685 -2.1 -11.3 TIGR01212 family radical SAM protein compare
MMP_RS06730 -2.0 -1.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS01365 -2.0 -2.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05540 -2.0 -3.0 hypothetical protein compare
MMP_RS02235 -2.0 -10.0 CBS domain-containing protein compare
MMP_RS01980 -2.0 -14.6 trimeric intracellular cation channel family protein compare
MMP_RS05440 -2.0 -10.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS05875 -2.0 -4.0 hydroxyethylthiazole kinase compare
MMP_RS07750 -2.0 -7.1 DUF357 domain-containing protein compare
MMP_RS05265 -2.0 -3.3 2-isopropylmalate synthase compare
MMP_RS04710 -2.0 -2.7 hypothetical protein compare
MMP_RS01830 -2.0 -3.2 tRNA-Val compare
MMP_RS00050 -1.9 -8.7 AarF/UbiB family protein compare
MMP_RS00320 -1.9 -3.3 class I SAM-dependent methyltransferase compare
MMP_RS02175 -1.9 -1.8 DUF1611 domain-containing protein compare
MMP_RS07385 -1.9 -2.3 protein translocase SEC61 complex subunit gamma compare
MMP_RS02190 -1.8 -3.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03095 -1.8 -6.5 diphthine synthase compare
MMP_RS01250 -1.8 -8.3 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS05930 -1.8 -4.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS01665 -1.8 -2.8 DUF2111 domain-containing protein compare
MMP_RS03205 -1.7 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02800 -1.7 -6.6 nucleotidyltransferase domain-containing protein compare
MMP_RS00290 -1.7 -7.2 hypothetical protein compare
MMP_RS00040 -1.7 -6.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01840 -1.7 -10.7 TIGR00289 family protein compare
MMP_RS06865 -1.7 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00985 -1.7 -6.8 CDC48 family AAA ATPase compare
MMP_RS03475 -1.6 -1.2 hypothetical protein compare
MMP_RS05815 -1.6 -2.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00450 -1.6 -2.5 4Fe-4S binding protein compare
MMP_RS00900 -1.6 -3.9 50S ribosomal protein L39e compare
MMP_RS03700 -1.6 -7.2 sodium:proton antiporter compare
MMP_RS07425 -1.6 -5.3 GTP-binding protein compare
MMP_RS03140 -1.6 -10.8 hypothetical protein compare
MMP_RS05765 -1.5 -8.5 M42 family metallopeptidase compare
MMP_RS06940 -1.5 -2.7 polyprenyl diphosphate synthase compare
MMP_RS06110 -1.5 -5.2 ATP-dependent protease LonB compare
MMP_RS04870 -1.5 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS03145 -1.5 -8.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07420 -1.5 -3.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00750 -1.5 -3.5 fumarate hydratase compare
MMP_RS03250 -1.5 -3.0 MJ1244 family protein compare
MMP_RS05250 -1.4 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05425 -1.4 -6.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05245 -1.4 -9.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01475 -1.4 -8.6 phosphosulfolactate synthase compare
MMP_RS07790 -1.4 -8.9 segregation/condensation protein A compare
MMP_RS07365 -1.4 -9.6 2-phosphoglycerate kinase compare
MMP_RS05925 -1.4 -3.2 small nuclear ribonucleoprotein compare
MMP_RS08840 -1.4 -8.7 class I SAM-dependent methyltransferase compare
MMP_RS07700 -1.3 -8.1 DUF1188 domain-containing protein compare
MMP_RS01335 -1.3 -4.2 prefoldin subunit beta compare
MMP_RS00720 -1.3 -6.2 metal-dependent hydrolase compare
MMP_RS08330 -1.3 -5.7 NADH-quinone oxidoreductase subunit H compare
MMP_RS05545 -1.3 -6.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04850 -1.3 -10.6 UPF0254 family protein compare
MMP_RS08690 -1.3 -10.5 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS05555 -1.3 -2.1 DUF4040 domain-containing protein compare
MMP_RS00725 -1.2 -6.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00620 -1.2 -7.3 4Fe-4S binding protein compare
MMP_RS06395 -1.2 -4.4 ThiF family adenylyltransferase compare
MMP_RS07955 -1.2 -4.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05090 -1.2 -6.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06980 -1.2 -7.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS02110 -1.2 -1.6 hypothetical protein compare
MMP_RS03110 -1.2 -5.9 glycosyltransferase family 2 protein compare
MMP_RS06200 -1.2 -8.5 M24 family metallopeptidase compare
MMP_RS00730 -1.2 -5.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06130 -1.1 -3.7 peptidylprolyl isomerase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in rich t2 experiments