Experiment set4IT048 for Methanococcus maripaludis JJ

Compare to:

Iron excess (2.5x) , formate media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.0 -20.4 hypothetical protein compare
MMJJ_RS06860 -5.6 -5.5 hypothetical protein compare
MMJJ_RS04200 -5.3 -7.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS04485 -5.3 -11.3 riboflavin synthase compare
MMJJ_RS06695 -4.7 -4.6 amidohydrolase compare
MMJJ_RS06490 -4.6 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS06225 -4.5 -3.1 adenosylmethionine decarboxylase compare
MMJJ_RS00275 -4.5 -4.1 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05930 -4.4 -3.0 cell division protein SepF compare
MMJJ_RS02090 -4.4 -7.3 tyramine--L-glutamate ligase compare
MMJJ_RS05450 -4.3 -18.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS05650 -4.2 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS03615 -4.2 -4.9 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07655 -4.1 -15.8 hypothetical protein compare
MMJJ_RS03580 -4.0 -4.8 TIGR00303 family protein compare
MMJJ_RS06840 -3.9 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00125 -3.9 -2.6 KEOPS complex subunit Cgi121 compare
MMJJ_RS05610 -3.8 -5.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08250 -3.8 -9.1 hydrogenase maturation peptidase HycI compare
MMJJ_RS01750 -3.8 -4.4 ferrous iron transport protein A compare
MMJJ_RS03670 -3.8 -6.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08020 -3.7 -9.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06855 -3.7 -3.0 DUF2104 domain-containing protein compare
MMJJ_RS05535 -3.7 -14.4 hypothetical protein compare
MMJJ_RS06510 -3.6 -4.8 LL-diaminopimelate aminotransferase compare
MMJJ_RS06910 -3.6 -4.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05445 -3.6 -2.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03840 -3.6 -4.8 DHH family phosphoesterase compare
MMJJ_RS03065 -3.5 -15.0 CBS domain-containing protein compare
MMJJ_RS01935 -3.5 -4.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS00355 -3.5 -4.7 ribonuclease P protein component 4 compare
MMJJ_RS08330 -3.5 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00270 -3.5 -5.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07665 -3.5 -23.2 formate dehydrogenase subunit alpha compare
MMJJ_RS03820 -3.5 -5.3 hydrogenase formation protein HypD compare
MMJJ_RS00570 -3.4 -3.1 ribonuclease P compare
MMJJ_RS04155 -3.4 -8.6 hypothetical protein compare
MMJJ_RS07380 -3.4 -11.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06485 -3.4 -4.6 phosphoglycerate kinase compare
MMJJ_RS05575 -3.4 -6.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03110 -3.4 -5.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01755 -3.4 -3.2 ferrous iron transport protein B compare
MMJJ_RS07670 -3.4 -18.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS02045 -3.4 -4.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06155 -3.3 -7.6 phosphatidylglycerophosphatase A compare
MMJJ_RS04800 -3.3 -8.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS02920 -3.3 -3.2 30S ribosomal protein S27ae compare
MMJJ_RS00215 -3.3 -3.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07705 -3.3 -4.9 GTP-binding protein EngB compare
MMJJ_RS06255 -3.3 -8.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06725 -3.3 -14.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS01870 -3.3 -3.1 methanogenesis marker 15 protein compare
MMJJ_RS03005 -3.2 -4.9 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06915 -3.2 -15.0 helix-turn-helix domain-containing protein compare
MMJJ_RS06240 -3.2 -4.2 dihydropteroate synthase-like protein compare
MMJJ_RS06040 -3.0 -4.3 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01360 -3.0 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03295 -3.0 -15.5 PHP domain-containing protein compare
MMJJ_RS04475 -3.0 -3.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS02200 -3.0 -12.8 chorismate pyruvate-lyase family protein compare
MMJJ_RS08625 -3.0 -8.7 magnesium/cobalt transporter CorA compare
MMJJ_RS09130 -3.0 -2.6 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS07660 -3.0 -10.5 carbonic anhydrase compare
MMJJ_RS03895 -3.0 -5.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS03150 -2.9 -7.9 2-phospho-L-lactate transferase compare
MMJJ_RS05330 -2.9 -3.4 DNA polymerase II large subunit compare
MMJJ_RS06390 -2.9 -3.3 NADPH-dependent F420 reductase compare
MMJJ_RS04050 -2.9 -2.3 dihydroneopterin aldolase family protein compare
MMJJ_RS04685 -2.9 -10.3 carbamoyltransferase HypF compare
MMJJ_RS06625 -2.9 -2.3 pyruvate synthase subunit PorB compare
MMJJ_RS08340 -2.9 -7.2 archaeoflavoprotein AfpA compare
MMJJ_RS08005 -2.9 -15.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS01690 -2.8 -4.9 methanogenesis marker 12 protein compare
MMJJ_RS05415 -2.8 -2.5 hypothetical protein compare
MMJJ_RS01565 -2.8 -6.4 TIGR00267 family protein compare
MMJJ_RS02040 -2.8 -2.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS09375 -2.8 -2.0 hypothetical protein compare
MMJJ_RS08000 -2.8 -11.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS05260 -2.8 -7.0 ATP-grasp domain-containing protein compare
MMJJ_RS03055 -2.8 -5.1 hypothetical protein compare
MMJJ_RS05620 -2.7 -5.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05655 -2.7 -8.7 HisA/HisF family protein compare
MMJJ_RS04520 -2.7 -7.4 coenzyme F430 synthase compare
MMJJ_RS07360 -2.7 -1.9 TIGR00269 family protein compare
MMJJ_RS00210 -2.7 -3.4 DUF530 family protein compare
MMJJ_RS03760 -2.7 -4.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS07950 -2.7 -4.0 4Fe-4S binding protein compare
MMJJ_RS03620 -2.7 -6.1 DUF2097 domain-containing protein compare
MMJJ_RS08660 -2.6 -3.7 acetylornithine transaminase compare
MMJJ_RS05950 -2.6 -3.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03830 -2.6 -10.4 CBS domain-containing protein compare
MMJJ_RS06835 -2.6 -12.8 4Fe-4S binding protein compare
MMJJ_RS08840 -2.6 -5.9 calcium/sodium antiporter compare
MMJJ_RS08855 -2.6 -7.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04970 -2.6 -2.9 DUF655 domain-containing protein compare
MMJJ_RS06785 -2.6 -8.5 RNA ligase partner protein compare
MMJJ_RS06700 -2.6 -6.3 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06805 -2.6 -3.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00645 -2.5 -12.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08320 -2.5 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03875 -2.5 -5.3 CBS domain-containing protein compare
MMJJ_RS04995 -2.5 -6.5 Tfx family DNA-binding protein compare
MMJJ_RS03200 -2.5 -2.7 uroporphyrinogen-III synthase compare
MMJJ_RS07000 -2.4 -2.5 TrkH family potassium uptake protein compare
MMJJ_RS03270 -2.4 -4.0 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01475 -2.4 -3.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS08155 -2.4 -4.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04730 -2.4 -3.7 tyrosine decarboxylase MfnA compare
MMJJ_RS03190 -2.4 -3.2 phosphopyruvate hydratase compare
MMJJ_RS08055 -2.4 -6.8 methanogenesis marker 14 protein compare
MMJJ_RS07995 -2.4 -6.7 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07350 -2.4 -3.9 4Fe-4S binding protein compare
MMJJ_RS03630 -2.3 -11.0 AMP phosphorylase compare
MMJJ_RS04595 -2.3 -6.1 hypothetical protein compare
MMJJ_RS05295 -2.3 -9.9 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06185 -2.3 -6.6 cobalamin biosynthesis protein compare
MMJJ_RS08080 -2.3 -9.7 TIGR00300 family protein compare
MMJJ_RS06750 -2.3 -3.1 homoaconitase large subunit compare
MMJJ_RS07720 -2.2 -2.3 UPF0058 family protein compare
MMJJ_RS05190 -2.2 -8.3 gamma carbonic anhydrase family protein compare
MMJJ_RS07345 -2.2 -6.7 homocysteine biosynthesis protein compare
MMJJ_RS04790 -2.2 -4.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08535 -2.2 -4.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01600 -2.2 -3.3 radical SAM protein compare
MMJJ_RS00205 -2.2 -6.1 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05070 -2.2 -2.6 DNA primase catalytic subunit PriS compare
MMJJ_RS03815 -2.2 -2.1 nascent polypeptide-associated complex protein compare
MMJJ_RS09175 -2.2 -2.2 anthranilate synthase component I compare
MMJJ_RS06220 -2.2 -6.0 polyamine aminopropyltransferase compare
MMJJ_RS04655 -2.2 -6.6 FAD-dependent oxidoreductase compare
MMJJ_RS03660 -2.2 -3.8 DUF447 family protein compare
MMJJ_RS06705 -2.2 -6.2 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05590 -2.2 -3.1 homoserine dehydrogenase compare
MMJJ_RS07155 -2.2 -8.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS08095 -2.2 -4.3 cobyric acid synthase CobQ compare
MMJJ_RS02055 -2.2 -11.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS04675 -2.2 -6.5 thiamine pyrophosphate-binding protein compare
MMJJ_RS06175 -2.2 -3.9 DUF1743 domain-containing protein compare
MMJJ_RS07785 -2.1 -3.3 fumarate reductase subunit A compare
MMJJ_RS02275 -2.1 -4.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00050 -2.1 -11.5 AAA family ATPase compare
MMJJ_RS06270 -2.1 -8.4 dethiobiotin synthase compare
MMJJ_RS06875 -2.1 -2.9 hypothetical protein compare
MMJJ_RS07980 -2.1 -10.1 biotin synthase BioB compare
MMJJ_RS00040 -2.1 -10.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00560 -2.1 -3.3 homoisocitrate dehydrogenase compare
MMJJ_RS06865 -2.1 -2.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03115 -2.1 -7.1 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00075 -2.1 -9.8 AAA family ATPase compare
MMJJ_RS06050 -2.1 -10.2 molybdopterin molybdotransferase MoeA compare
MMJJ_RS04150 -2.1 -3.2 DUF5379 domain-containing protein compare
MMJJ_RS05995 -2.0 -3.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS05810 -2.0 -5.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07725 -2.0 -6.8 DNA primase DnaG compare
MMJJ_RS03800 -2.0 -10.3 aldolase compare
MMJJ_RS02935 -2.0 -3.3 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05375 -2.0 -12.7 radical SAM protein compare
MMJJ_RS06375 -2.0 -5.0 UbiX family flavin prenyltransferase compare
MMJJ_RS04110 -2.0 -5.3 hypothetical protein compare
MMJJ_RS06180 -2.0 -2.6 tryptophan--tRNA ligase compare
MMJJ_RS05935 -2.0 -2.9 Era-like GTP-binding protein compare
MMJJ_RS00600 -1.9 -3.1 hydroxymethylbilane synthase compare
MMJJ_RS06930 -1.9 -3.0 type II methionyl aminopeptidase compare
MMJJ_RS01345 -1.9 -3.1 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00035 -1.9 -13.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00265 -1.9 -6.0 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03230 -1.9 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04615 -1.9 -3.7 methanogenesis marker 3 protein compare
MMJJ_RS00070 -1.9 -5.1 CooT family nickel-binding protein compare
MMJJ_RS08620 -1.9 -2.5 DUF373 family protein compare
MMJJ_RS01865 -1.9 -5.2 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS00045 -1.9 -10.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03095 -1.9 -3.3 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS07410 -1.8 -3.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04010 -1.8 -7.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS07245 -1.8 -4.1 amidohydrolase family protein compare
MMJJ_RS06760 -1.8 -5.2 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07275 -1.8 -3.0 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS01415 -1.8 -2.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS05490 -1.8 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00055 -1.8 -8.6 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00060 -1.8 -12.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS07370 -1.8 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS00520 -1.8 -3.6 PDGLE domain-containing protein compare
MMJJ_RS03965 -1.8 -1.9 DNA-directed RNA polymerase subunit L compare
MMJJ_RS00065 -1.7 -9.8 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07635 -1.7 -11.4 response regulator transcription factor compare
MMJJ_RS03125 -1.7 -4.6 GMC oxidoreductase compare
MMJJ_RS04565 -1.7 -2.1 sirohydrochlorin nickelochelatase compare
MMJJ_RS00360 -1.7 -2.9 adenosylhomocysteinase compare
MMJJ_RS01765 -1.7 -8.5 winged helix-turn-helix domain-containing protein compare
MMJJ_RS04670 -1.7 -5.1 DUF2117 domain-containing protein compare
MMJJ_RS07190 -1.7 -3.4 RtcB family protein compare
MMJJ_RS00580 -1.7 -2.4 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08795 -1.7 -2.8 phosphoglucosamine mutase compare
MMJJ_RS05225 -1.7 -1.6 Gar1/Naf1 family protein compare
MMJJ_RS00080 -1.7 -10.6 DUF166 domain-containing protein compare
MMJJ_RS00515 -1.7 -8.6 cobalt transporter CbiM compare
MMJJ_RS08405 -1.7 -9.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS02190 -1.7 -11.9 molybdopterin biosynthesis protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms