Experiment set4IT048 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Bacitracin 0.12 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_4149 -4.9 -6.7 psp operon transcriptional activator PspF conserved
Ga0059261_1877 -4.5 -23.9 Cation/multidrug efflux pump conserved
Ga0059261_0638 -4.5 -21.5 type I secretion outer membrane protein, TolC family compare
Ga0059261_4145 -3.9 -10.8 phage shock protein C (PspC) family protein conserved
Ga0059261_1370 -3.8 -11.5 Signal transduction histidine kinase compare
Ga0059261_1878 -3.7 -8.6 RND family efflux transporter, MFP subunit compare
Ga0059261_2543 -3.7 -18.4 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
Ga0059261_4146 -3.6 -13.0 phage shock protein B compare
Ga0059261_2490 -3.4 -8.1 Small protein A (tmRNA-binding) compare
Ga0059261_1369 -3.2 -13.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1795 -3.1 -6.9 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_3159 -3.1 -6.4 TolR protein compare
Ga0059261_4186 -2.9 -3.8 Phosphopantetheine attachment site compare
Ga0059261_0321 -2.7 -3.7 hypothetical protein compare
Ga0059261_4139 -2.6 -4.2 hypothetical protein compare
Ga0059261_0613 -2.5 -5.9 FecR family protein compare
Ga0059261_4187 -2.3 -11.4 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_0349 -2.2 -6.0 MarR family compare
Ga0059261_3156 -2.2 -7.4 peptidoglycan-associated lipoprotein compare
Ga0059261_3506 -2.1 -2.3 Predicted permeases compare
Ga0059261_3615 -2.1 -2.4 hypothetical protein compare
Ga0059261_4188 -2.1 -8.5 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_1001 -2.1 -9.5 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
Ga0059261_2181 -2.0 -13.2 penicillin-binding protein, 1A family compare
Ga0059261_1287 -1.9 -10.0 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_2314 -1.9 -5.3 Protein-disulfide isomerase compare
Ga0059261_3191 -1.9 -8.1 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2295 -1.8 -5.3 DUF218 domain compare
Ga0059261_1301 -1.8 -4.9 Methyltransferase domain compare
Ga0059261_2700 -1.8 -12.1 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_3637 -1.7 -3.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_0950 -1.6 -3.3 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_0131 -1.6 -6.3 hypothetical protein compare
Ga0059261_1451 -1.6 -5.1 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_2021 -1.6 -10.8 Protein of unknown function (DUF2029) compare
Ga0059261_3157 -1.6 -11.3 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_3160 -1.6 -4.2 TolQ protein compare
Ga0059261_0163 -1.6 -3.2 Major Facilitator Superfamily compare
Ga0059261_2050 -1.5 -4.9 hypothetical protein compare
Ga0059261_1929 -1.5 -5.3 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_2213 -1.5 -6.3 Domain of unknown function (DUF3576) compare
Ga0059261_1382 -1.5 -7.6 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_2188 -1.5 -1.9 Uncharacterized conserved protein compare
Ga0059261_0814 -1.4 -6.7 hypothetical protein compare
Ga0059261_1911 -1.4 -1.8 Thioredoxin-like proteins and domains compare
Ga0059261_1360 -1.4 -8.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_2189 -1.4 -7.1 uncharacterized domain 1 compare
Ga0059261_1545 -1.4 -4.4 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_1928 -1.4 -4.3 Predicted permeases compare
Ga0059261_2013 -1.4 -10.1 signal peptidase I, bacterial type compare
Ga0059261_2514 -1.4 -9.9 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_1560 -1.3 -2.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1909 -1.3 -6.7 MAF protein compare
Ga0059261_3190 -1.3 -10.1 3-isopropylmalate dehydrogenase compare
Ga0059261_3695 -1.3 -8.6 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_2417 -1.3 -2.8 phytoene desaturase compare
Ga0059261_0170 -1.3 -4.0 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_2294 -1.2 -2.3 Cell division protein compare
Ga0059261_2707 -1.2 -7.3 fructose-1,6-bisphosphatase, class II compare
Ga0059261_0815 -1.2 -9.6 Uncharacterized protein involved in tellurite resistance compare
Ga0059261_3255 -1.2 -6.3 hypothetical protein compare
Ga0059261_2540 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2179 -1.2 -7.1 Phospholipid N-methyltransferase compare
Ga0059261_2418 -1.2 -4.2 lycopene cyclase compare
Ga0059261_3101 -1.2 -3.7 nucleotide sugar dehydrogenase compare
Ga0059261_2190 -1.1 -3.0 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_3403 -1.1 -7.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_1293 -1.1 -7.5 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_0175 -1.1 -5.9 heme exporter protein CcmC compare
Ga0059261_2498 -1.0 -3.8 hypothetical protein compare
Ga0059261_1411 -1.0 -8.9 Opacity protein and related surface antigens compare
Ga0059261_2034 -1.0 -7.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0204 -1.0 -4.0 protein RecA compare
Ga0059261_2444 -1.0 -4.0 5-aminolevulinic acid synthase compare
Ga0059261_0790 -1.0 -2.1 putative membrane protein insertion efficiency factor compare
Ga0059261_0136 -1.0 -3.0 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_0172 -1.0 -5.7 Cytochrome c biogenesis factor compare
Ga0059261_3671 -1.0 -1.7 Citrate lyase beta subunit compare
Ga0059261_1605 -0.9 -5.1 transcriptional regulator, TetR family compare
Ga0059261_0354 -0.9 -2.8 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_3211 -0.9 -5.6 hypothetical protein compare
Ga0059261_0039 -0.9 -4.9 His Kinase A (phospho-acceptor) domain compare
Ga0059261_3437 -0.9 -1.8 hypothetical protein compare
Ga0059261_0038 -0.9 -3.3 Transcriptional regulators compare
Ga0059261_0857 -0.8 -5.0 Phospholipid N-methyltransferase compare
Ga0059261_3748 -0.8 -2.3 ribosomal protein L15, bacterial/organelle compare
Ga0059261_3512 -0.8 -1.1 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_3210 -0.8 -2.4 Organic radical activating enzymes compare
Ga0059261_4012 -0.8 -1.9 AMP nucleosidase compare
Ga0059261_1601 -0.8 -1.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_2980 -0.8 -7.0 Outer membrane protein compare
Ga0059261_1696 -0.8 -3.1 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1868 -0.8 -2.2 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_2120 -0.8 -2.5 hypothetical protein compare
Ga0059261_2244 -0.8 -5.8 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_0918 -0.8 -3.0 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_0174 -0.8 -1.5 hypothetical protein compare
Ga0059261_1368 -0.8 -2.6 hypothetical protein compare
Ga0059261_0171 -0.8 -1.4 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3186 -0.7 -5.3 Excinuclease ABC subunit C compare
Ga0059261_1564 -0.7 -2.8 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_0089 -0.7 -3.5 trigger factor compare
Ga0059261_0951 -0.7 -3.5 hypothetical protein compare
Ga0059261_4140 -0.7 -1.9 hypothetical protein compare
Ga0059261_1071 -0.7 -2.2 hypothetical protein compare
Ga0059261_0650 -0.7 -1.6 Negative regulator of beta-lactamase expression compare
Ga0059261_0685 -0.7 -1.8 pyruvate kinase compare
Ga0059261_1676 -0.7 -4.7 transcriptional regulator, IclR family compare
Ga0059261_1869 -0.7 -3.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_0037 -0.7 -5.1 hypothetical protein compare
Ga0059261_2978 -0.7 -2.5 Transcriptional regulators compare
Ga0059261_3481 -0.7 -3.7 Beta-glucosidase-related glycosidases compare
Ga0059261_2534 -0.7 -3.4 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_2315 -0.7 -3.9 Protein-disulfide isomerase compare
Ga0059261_1417 -0.7 -2.1 transcriptional regulator, XRE family compare
Ga0059261_3103 -0.7 -2.4 Glycosyltransferase compare
Ga0059261_2458 -0.7 -4.2 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_3617 -0.7 -4.9 hypothetical protein compare
Ga0059261_0647 -0.7 -3.4 tRNA pseudouridine(38-40) synthase compare
Ga0059261_0242 -0.7 -2.0 hypothetical protein compare
Ga0059261_1080 -0.6 -2.4 Chemotaxis signal transduction protein compare
Ga0059261_3595 -0.6 -3.2 Site-specific recombinase XerD compare
Ga0059261_1126 -0.6 -2.7 Response regulator compare
Ga0059261_1768 -0.6 -1.4 Sigma-70 region 2 compare
Ga0059261_4143 -0.6 -1.3 hypothetical protein compare
Ga0059261_2481 -0.6 -3.0 Ppx/GppA phosphatase family compare
Ga0059261_3483 -0.6 -3.4 segregation and condensation protein B compare
Ga0059261_1381 -0.6 -2.4 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0393 -0.6 -1.9 hypothetical protein compare
Ga0059261_3153 -0.6 -1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1114 -0.6 -1.9 hypothetical protein compare
Ga0059261_1253 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1017 -0.6 -3.4 tRNA-guanine transglycosylase compare
Ga0059261_3207 -0.6 -2.5 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_1010 -0.6 -4.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_3285 -0.6 -2.3 Acyl dehydratase compare
Ga0059261_3038 -0.6 -3.1 hypothetical protein compare
Ga0059261_1546 -0.6 -3.8 MerC mercury resistance protein compare
Ga0059261_2222 -0.6 -3.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_2981 -0.6 -4.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1908 -0.5 -2.0 Ribonuclease E/G family compare
Ga0059261_0379 -0.5 -2.0 DNA binding domain, excisionase family compare
Ga0059261_0745 -0.5 -1.8 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_3493 -0.5 -3.1 hypothetical protein compare
Ga0059261_0719 -0.5 -2.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3200 -0.5 -4.2 Opacity protein and related surface antigens compare
Ga0059261_2191 -0.5 -2.6 ribosomal subunit interface protein compare
Ga0059261_3488 -0.5 -1.1 Histidine kinase/HAMP domain compare
Ga0059261_0227 -0.5 -1.3 hypothetical protein compare
Ga0059261_2739 -0.5 -2.6 heat-inducible transcription repressor HrcA compare
Ga0059261_3786 -0.5 -2.8 Malic enzyme compare
Ga0059261_3624 -0.5 -2.7 hypothetical protein compare
Ga0059261_1871 -0.5 -3.5 ABC transport permease subunit compare
Ga0059261_1837 -0.5 -1.2 Staphylococcal nuclease homologue compare
Ga0059261_3866 -0.5 -3.8 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
Ga0059261_3209 -0.5 -3.9 queuosine biosynthesis protein QueC compare
Ga0059261_3965 -0.5 -3.0 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_0361 -0.5 -3.7 conserved hypothetical protein, YceG family compare
Ga0059261_1292 -0.5 -1.6 hypothetical protein compare
Ga0059261_2764 -0.5 -2.2 Site-specific recombinase XerD compare
Ga0059261_1659 -0.5 -4.1 transcriptional regulator, XRE family with cupin sensor compare
Ga0059261_3865 -0.5 -2.9 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
Ga0059261_1285 -0.5 -3.1 Uncharacterized conserved protein compare
Ga0059261_4025 -0.5 -1.0 Nucleotidyl transferase compare
Ga0059261_0012 -0.5 -2.9 Protein of unknown function (DUF1469) compare
Ga0059261_1496 -0.5 -1.9 uroporphyrin-III C-methyltransferase compare
Ga0059261_0802 -0.4 -2.1 protein-export chaperone SecB compare
Ga0059261_2049 -0.4 -2.7 argininosuccinate lyase compare
Ga0059261_2678 -0.4 -2.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Ga0059261_1064 -0.4 -1.1 Uncharacterized conserved protein compare
Ga0059261_3036 -0.4 -3.0 RND family efflux transporter, MFP subunit compare
Ga0059261_4056 -0.4 -3.4 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_0931 -0.4 -1.3 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_1507 -0.4 -1.4 deoxycytidine triphosphate deaminase compare
Ga0059261_3431 -0.4 -2.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2185 -0.4 -3.6 FOG: Ankyrin repeat compare
Ga0059261_2395 -0.4 -1.9 hypothetical protein compare
Ga0059261_0891 -0.4 -1.5 hypothetical protein compare
Ga0059261_1984 -0.4 -2.6 rRNA methylase compare
Ga0059261_2400 -0.4 -2.2 Uncharacterized conserved protein compare
Ga0059261_1805 -0.4 -3.6 penicillin-binding protein, 1A family compare
Ga0059261_2885 -0.4 -2.3 Electron transfer flavoprotein, alpha subunit compare
Ga0059261_2501 -0.4 -2.3 C-terminal peptidase (prc) compare
Ga0059261_3347 -0.4 -1.6 Domain of unknown function DUF87 compare
Ga0059261_3094 -0.4 -2.6 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase/FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_2528 -0.4 -1.9 Uncharacterized conserved protein compare
Ga0059261_0255 -0.4 -1.3 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_3374 -0.4 -1.8 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_1260 -0.4 -3.1 cobaltochelatase CobT subunit (EC 6.6.1.2) compare
Ga0059261_2324 -0.4 -1.8 integration host factor, alpha subunit compare
Ga0059261_2701 -0.4 -3.2 Protein-disulfide isomerase compare
Ga0059261_3035 -0.4 -3.5 heavy metal efflux pump, CzcA family compare
Ga0059261_3520 -0.4 -3.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3938 -0.4 -2.6 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0556 -0.4 -1.0 Signal transduction histidine kinase compare
Ga0059261_2929 -0.4 -0.8 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_3144 -0.4 -1.1 Transcriptional regulator compare
Ga0059261_1830 -0.4 -0.8 hypothetical protein compare
Ga0059261_0161 -0.4 -1.2 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_2985 -0.4 -2.2 FecR family protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Bacitracin in Sphingomonas koreensis DSMZ 15582

For stress Bacitracin across organisms