Experiment set4IT048 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Bacitracin 0.12 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_1351 +0.9 8.4 signal peptide peptidase SppA, 67K type compare
Ga0059261_3100 +0.9 7.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_3121 +0.9 5.6 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3638 +0.7 1.5 Predicted integral membrane protein (DUF2282) compare
Ga0059261_1316 +0.7 1.7 hypothetical protein compare
Ga0059261_0433 +0.7 3.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1939 +0.7 1.4 putative phosphoesterase compare
Ga0059261_2730 +0.6 1.5 Sortase and related acyltransferases compare
Ga0059261_0889 +0.6 2.1 Cold shock proteins compare
Ga0059261_3280 +0.6 1.6 Uncharacterized conserved protein compare
Ga0059261_2774 +0.6 2.1 Transcription elongation factor compare
Ga0059261_4001 +0.6 3.7 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_0832 +0.6 5.0 Predicted permease compare
Ga0059261_0991 +0.5 4.1 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_1860 +0.5 1.1 Transposase compare
Ga0059261_0244 +0.5 2.9 FOG: CheY-like receiver compare
Ga0059261_1015 +0.5 2.6 Predicted phosphatases compare
Ga0059261_0990 +0.5 4.6 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_1876 +0.5 3.8 Predicted membrane protein compare
Ga0059261_4002 +0.5 3.5 Esterase/lipase compare
Ga0059261_0980 +0.5 2.8 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_0084 +0.5 2.1 hypothetical protein compare
Ga0059261_2663 +0.5 1.1 Domain of unknown function (DUF718) compare
Ga0059261_1472 +0.5 1.6 hypothetical protein compare
Ga0059261_1596 +0.4 1.4 CBS domain compare
Ga0059261_3833 +0.4 1.9 hypothetical protein compare
Ga0059261_0344 +0.4 2.0 Molecular chaperone (small heat shock protein) compare
Ga0059261_3605 +0.4 1.5 tRNA compare
Ga0059261_3227 +0.4 0.9 GTP-binding protein YchF compare
Ga0059261_0781 +0.4 1.2 hypothetical protein compare
Ga0059261_3491 +0.4 2.6 hypothetical protein compare
Ga0059261_3569 +0.4 0.9 chaperone protein DnaJ compare
Ga0059261_0725 +0.4 1.5 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_2413 +0.4 1.2 hypothetical protein compare
Ga0059261_0438 +0.4 2.1 hypothetical protein compare
Ga0059261_3124 +0.4 2.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_0237 +0.4 1.5 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_2897 +0.4 1.1 hypothetical protein compare
Ga0059261_2737 +0.4 2.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
Ga0059261_1914 +0.4 1.7 Acetyltransferases compare
Ga0059261_0811 +0.4 1.7 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_1563 +0.4 1.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_2448 +0.4 1.2 DNA protecting protein DprA compare
Ga0059261_0993 +0.4 1.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_3442 +0.4 1.5 HTH domain compare
Ga0059261_4196 +0.4 2.9 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_2951 +0.4 1.0 Heavy-metal resistance compare
Ga0059261_3128 +0.4 3.1 capsular exopolysaccharide family compare
Ga0059261_0448 +0.4 0.9 hypothetical protein compare
Ga0059261_4122 +0.4 1.5 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_2361 +0.4 1.4 Staphylococcal nuclease homologue compare
Ga0059261_2589 +0.3 1.8 Protein of unknown function (DUF2493) compare
Ga0059261_2090 +0.3 1.7 flagellar basal-body rod protein FlgC compare
Ga0059261_0749 +0.3 2.1 Membrane transporters of cations and cationic drugs compare
Ga0059261_1799 +0.3 1.1 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_1335 +0.3 1.7 Predicted ATPase compare
Ga0059261_2271 +0.3 2.6 branched-chain alpha-keto acid dehydrogenase E2 component (EC 2.3.1.168) compare
Ga0059261_3928 +0.3 1.4 Predicted thioesterase compare
Ga0059261_0220 +0.3 2.2 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_1032 +0.3 1.4 protein CrcB compare
Ga0059261_1732 +0.3 1.6 Flagellar hook capping protein - N-terminal region compare
Ga0059261_1912 +0.3 1.5 Nitroreductase compare
Ga0059261_3356 +0.3 0.7 hypothetical protein compare
Ga0059261_3058 +0.3 1.9 hypothetical protein compare
Ga0059261_0594 +0.3 2.3 RND family efflux transporter, MFP subunit compare
Ga0059261_0059 +0.3 0.8 Stress-induced morphogen (activity unknown) compare
Ga0059261_2018 +0.3 2.3 hypothetical protein compare
Ga0059261_3781 +0.3 1.9 hypothetical protein compare
Ga0059261_2680 +0.3 0.6 hypothetical protein compare
Ga0059261_0770 +0.3 0.9 hypothetical protein compare
Ga0059261_0905 +0.3 2.1 Protein of unknown function (DUF998) compare
Ga0059261_1707 +0.3 0.8 hypothetical protein compare
Ga0059261_0850 +0.3 1.0 hypothetical protein compare
Ga0059261_1161 +0.3 1.9 Cu(I)-responsive transcriptional regulator compare
Ga0059261_2493 +0.3 2.0 hypothetical protein compare
Ga0059261_1286 +0.3 2.0 phasin family protein compare
Ga0059261_0525 +0.3 1.1 Transcriptional regulator compare
Ga0059261_1923 +0.3 1.5 hypothetical protein compare
Ga0059261_0214 +0.3 2.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ga0059261_0208 +0.3 1.6 Response regulator receiver domain compare
Ga0059261_1063 +0.3 2.2 methionine-R-sulfoxide reductase compare
Ga0059261_3780 +0.3 1.8 hypothetical protein compare
Ga0059261_3006 +0.3 1.0 hypothetical protein compare
Ga0059261_3430 +0.3 1.1 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_1904 +0.3 0.9 Asparaginase compare
Ga0059261_2272 +0.3 2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Ga0059261_0201 +0.3 2.4 Na+/H+-dicarboxylate symporters compare
Ga0059261_1014 +0.3 2.0 cation diffusion facilitator family transporter compare
Ga0059261_3800 +0.3 1.3 Cold shock proteins compare
Ga0059261_1612 +0.3 0.4 hypothetical protein compare
Ga0059261_2949 +0.3 1.4 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_0898 +0.3 0.9 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_0856 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_3129 +0.3 2.1 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_2273 +0.3 2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Ga0059261_3064 +0.3 1.1 hypothetical protein compare
Ga0059261_3625 +0.3 1.4 Short-chain dehydrogenases of various substrate specificities compare
Ga0059261_2331 +0.3 1.8 hypothetical protein compare
Ga0059261_0623 +0.3 1.4 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_3366 +0.3 1.4 hypothetical protein compare
Ga0059261_1396 +0.3 0.7 EF-hand domain pair compare
Ga0059261_2909 +0.3 2.2 Transcriptional regulators compare
Ga0059261_3885 +0.3 0.8 K+-transporting ATPase, C subunit compare
Ga0059261_0024 +0.3 1.6 Predicted membrane protein compare
Ga0059261_3898 +0.3 1.6 hypothetical protein compare
Ga0059261_3666 +0.3 1.3 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Ga0059261_3752 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1119 +0.3 0.7 Chemotaxis signal transduction protein compare
Ga0059261_2094 +0.3 1.9 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Ga0059261_3395 +0.3 1.2 hypothetical protein compare
Ga0059261_1500 +0.3 1.3 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_0067 +0.3 1.7 acetolactate synthase, small subunit (EC 2.2.1.6) compare
Ga0059261_2818 +0.3 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3710 +0.3 1.8 Peptidase family M28 compare
Ga0059261_2801 +0.3 1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3099 +0.3 2.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Ga0059261_1937 +0.3 1.3 Protein of unknown function (DUF2807) compare
Ga0059261_2365 +0.3 0.8 Mu-like prophage FluMu protein gp41 compare
Ga0059261_3545 +0.3 0.9 hypothetical protein compare
Ga0059261_3675 +0.3 1.3 Methyl-accepting chemotaxis protein compare
Ga0059261_1490 +0.3 2.2 Glycosyltransferase compare
Ga0059261_1334 +0.3 1.4 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Ga0059261_3073 +0.2 1.5 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_3874 +0.2 1.6 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_1999 +0.2 1.6 threonine synthase compare
Ga0059261_3362 +0.2 2.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1856 +0.2 1.2 hypothetical protein compare
Ga0059261_2583 +0.2 1.5 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_3561 +0.2 1.4 Uncharacterized conserved protein compare
Ga0059261_3997 +0.2 1.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Ga0059261_0816 +0.2 1.0 hypothetical protein compare
Ga0059261_4058 +0.2 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1416 +0.2 1.7 hypothetical protein compare
Ga0059261_2029 +0.2 1.5 diguanylate cyclase (GGDEF) domain compare
Ga0059261_0720 +0.2 1.1 Predicted small integral membrane protein compare
Ga0059261_0620 +0.2 2.2 Outer membrane cobalamin receptor protein compare
Ga0059261_1919 +0.2 2.0 L,D-transpeptidase catalytic domain compare
Ga0059261_0102 +0.2 1.9 endopeptidase La compare
Ga0059261_1774 +0.2 0.7 hypothetical protein compare
Ga0059261_0306 +0.2 1.4 FOG: HPt domain compare
Ga0059261_3660 +0.2 1.9 HprK-related kinase A compare
Ga0059261_3888 +0.2 1.4 Major Facilitator Superfamily compare
Ga0059261_3401 +0.2 1.9 Domain of unknown function (DUF4154) compare
Ga0059261_2108 +0.2 1.7 acetyl-CoA acetyltransferases compare
Ga0059261_2134 +0.2 1.6 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_0472 +0.2 1.0 Predicted metal-binding protein compare
Ga0059261_3813 +0.2 1.5 Alcohol dehydrogenase GroES-like domain compare
Ga0059261_1389 +0.2 1.5 Mechanosensitive ion channel compare
Ga0059261_1385 +0.2 2.1 Glycosyltransferase compare
Ga0059261_3721 +0.2 1.6 hypothetical protein compare
Ga0059261_3555 +0.2 1.9 Predicted metal-dependent hydrolase compare
Ga0059261_2868 +0.2 1.7 Acyl dehydratase compare
Ga0059261_2143 +0.2 1.2 Zn-dependent proteases compare
Ga0059261_2578 +0.2 1.5 Protein of unknown function (DUF2840) compare
Ga0059261_0625 +0.2 1.2 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ga0059261_2928 +0.2 1.2 oxygen-dependent methionine synthase, putative oxygenase component MesX (from data) compare
Ga0059261_2934 +0.2 1.4 hypothetical protein compare
Ga0059261_3784 +0.2 1.9 DNA mismatch repair protein MutS compare
Ga0059261_3407 +0.2 1.7 Superfamily II DNA and RNA helicases compare
Ga0059261_2992 +0.2 1.1 Biopolymer transport protein compare
Ga0059261_0030 +0.2 1.4 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0202 +0.2 1.7 Glutathione S-transferase compare
Ga0059261_1310 +0.2 1.1 Predicted transcriptional regulators compare
Ga0059261_2887 +0.2 1.7 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2291 +0.2 1.4 putative efflux protein, MATE family compare
Ga0059261_2948 +0.2 0.9 Putative copper export protein compare
Ga0059261_4161 +0.2 1.6 Predicted phosphoesterase compare
Ga0059261_2966 +0.2 1.3 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_3140 +0.2 1.3 Regulator of competence-specific genes compare
Ga0059261_0742 +0.2 1.2 Uncharacterized small membrane protein compare
Ga0059261_1530 +0.2 1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_0272 +0.2 1.1 Uncharacterized small protein compare
Ga0059261_0412 +0.2 0.9 DNA-binding HTH domain-containing proteins compare
Ga0059261_1075 +0.2 0.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_4084 +0.2 1.6 Glycosyltransferase compare
Ga0059261_2378 +0.2 0.5 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_2593 +0.2 0.7 hypothetical protein compare
Ga0059261_1077 +0.2 1.3 STAS domain compare
Ga0059261_4078 +0.2 1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_0085 +0.2 1.6 hypothetical protein compare
Ga0059261_3708 +0.2 1.2 GAF domain-containing protein compare
Ga0059261_1986 +0.2 1.4 Glycine/serine hydroxymethyltransferase compare
Ga0059261_1092 +0.2 0.6 flagellar motor switch protein FliN compare
Ga0059261_1836 +0.2 1.5 hypothetical protein compare
Ga0059261_0223 +0.2 0.8 Peptidase inhibitor I78 family compare
Ga0059261_3971 +0.2 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2131 +0.2 1.3 large conductance mechanosensitive channel protein compare
Ga0059261_0294 +0.2 1.1 arsenate reductase (glutaredoxin) compare
Ga0059261_0493 +0.2 0.5 hypothetical protein compare
Ga0059261_1424 +0.2 1.4 Acetyltransferases compare
Ga0059261_0812 +0.2 0.7 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_2286 +0.2 1.2 Fe2+ transport system protein B compare
Ga0059261_2842 +0.2 1.3 SnoaL-like domain compare
Ga0059261_1990 +0.2 1.4 Methyltransferase domain compare
Ga0059261_1361 +0.2 1.8 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_1339 +0.2 0.5 hypothetical protein compare
Ga0059261_3107 +0.2 1.4 EPS-associated transcriptional regulator, MarR family compare
Ga0059261_0154 +0.2 1.6 Predicted permeases compare
Ga0059261_3906 +0.2 1.4 Transcriptional regulator compare
Ga0059261_1104 +0.2 1.5 flagellar biosynthetic protein FliR compare


Specific Phenotypes

For 7 genes in this experiment

For stress Bacitracin in Sphingomonas koreensis DSMZ 15582

For stress Bacitracin across organisms