Experiment set4IT048 for Herbaspirillum seropedicae SmR1

Compare to:

Defined media with L-Serine

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS10310 +1.1 3.8 flagellar M-ring protein FliF compare
HSERO_RS10150 +1.0 7.5 flagellar biosynthesis regulator FlhF compare
HSERO_RS10280 +1.0 2.1 flagellar basal body protein FliL compare
HSERO_RS14975 +1.0 5.7 flagellar motor protein MotA compare
HSERO_RS10275 +1.0 3.8 flagellar motor switch protein FliM compare
HSERO_RS10305 +1.0 8.4 flagellar motor switch protein FliG compare
HSERO_RS10145 +1.0 8.2 flagellar biosynthesis protein FlhA compare
HSERO_RS10070 +1.0 2.4 hypothetical protein compare
HSERO_RS10765 +0.9 1.6 hypothetical protein compare
HSERO_RS10215 +0.9 4.0 flagellar P-ring protein FlgI compare
HSERO_RS10285 +0.9 4.3 flagellar hook-length control protein compare
HSERO_RS10140 +0.9 5.5 flagellar biosynthesis protein FlhB compare
HSERO_RS14985 +0.9 4.2 transcriptional regulator compare
HSERO_RS10260 +0.8 5.7 flagellar biosynthesis protein FliP compare
HSERO_RS05750 +0.8 3.6 hypothetical protein compare
HSERO_RS14970 +0.8 5.6 flagellar motor protein MotB compare
HSERO_RS07570 +0.8 2.4 membrane protein compare
HSERO_RS10175 +0.8 3.7 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS18630 +0.8 1.2 hemerythrin compare
HSERO_RS19535 +0.7 1.5 nucleotide-binding protein compare
HSERO_RS13490 +0.7 2.1 pseudouridine synthase compare
HSERO_RS10255 +0.7 1.8 flagellar biosynthesis protein FliQ compare
HSERO_RS19630 +0.7 0.6 AMP nucleosidase compare
HSERO_RS19750 +0.7 2.1 hypothetical protein compare
HSERO_RS09800 +0.7 2.1 hypothetical protein compare
HSERO_RS10135 +0.7 1.8 chemotaxis protein CheZ compare
HSERO_RS14350 +0.7 2.6 cysteine desulfurase compare
HSERO_RS10325 +0.7 2.1 flagellar biosynthesis protein compare
HSERO_RS13885 +0.7 4.8 histidine kinase compare
HSERO_RS21135 +0.7 1.5 transcriptional regulator compare
HSERO_RS02770 +0.7 1.7 hypothetical protein compare
HSERO_RS12880 +0.7 2.5 spore coat protein compare
HSERO_RS01435 +0.6 1.0 biopolymer transporter ExbB compare
HSERO_RS16490 +0.6 4.7 FimV compare
HSERO_RS03435 +0.6 1.1 bacterioferritin compare
HSERO_RS15055 +0.6 1.2 membrane protein compare
HSERO_RS05855 +0.6 3.8 flagellar motor protein MotA compare
HSERO_RS21650 +0.6 1.7 TetR family transcriptional regulator compare
HSERO_RS13065 +0.6 1.9 biopolymer transporter compare
HSERO_RS10295 +0.6 5.0 ATP synthase compare
HSERO_RS02765 +0.6 1.1 general stress protein compare
HSERO_RS02790 +0.6 1.9 hypothetical protein compare
HSERO_RS16680 +0.6 1.3 GntR family transcriptional regulator compare
HSERO_RS03300 +0.6 1.2 molybdenum cofactor biosynthesis protein MoaC compare
HSERO_RS19310 +0.6 2.5 membrane protein compare
HSERO_RS13890 +0.6 3.0 LuxR family transcriptional regulator compare
HSERO_RS10265 +0.6 3.6 flagellar biosynthesis protein FliO compare
HSERO_RS00220 +0.6 0.8 hypothetical protein compare
HSERO_RS06370 +0.6 1.5 aromatic compound catabolic protein compare
HSERO_RS07435 +0.6 1.7 formate dehydrogenase accessory protein FdhD compare
HSERO_RS06530 +0.6 0.9 muconolactone delta-isomerase compare
HSERO_RS12140 +0.6 1.0 5-deoxyglucuronate isomerase compare
HSERO_RS13040 +0.6 1.6 hypothetical protein compare
HSERO_RS07890 +0.6 1.5 hypothetical protein compare
HSERO_RS19720 +0.6 1.9 glyoxalase compare
HSERO_RS07175 +0.5 1.5 hypothetical protein compare
HSERO_RS01915 +0.5 2.8 membrane protein compare
HSERO_RS23150 +0.5 1.7 AraC family transcriptional regulator compare
HSERO_RS05860 +0.5 1.8 biopolymer transporter ExbD compare
HSERO_RS01985 +0.5 2.4 energy transducer TonB compare
HSERO_RS04170 +0.5 1.1 hypothetical protein compare
HSERO_RS10290 +0.5 2.6 flagellar biosynthesis protein FliJ compare
HSERO_RS01945 +0.5 2.1 hypothetical protein compare
HSERO_RS06570 +0.5 1.2 endoribonuclease L-PSP compare
HSERO_RS01550 +0.5 1.7 hypothetical protein compare
HSERO_RS23560 +0.5 2.3 MFS transporter compare
HSERO_RS11620 +0.5 2.4 4-carboxy muconolactone decarboxylase compare
HSERO_RS02110 +0.5 1.3 hypothetical protein compare
HSERO_RS02275 +0.5 0.6 hypothetical protein compare
HSERO_RS10315 +0.5 2.2 flagellar hook-basal body protein FliE compare
HSERO_RS04135 +0.5 1.2 amidohydrolase compare
HSERO_RS05040 +0.5 0.9 (2Fe-2S)-binding protein compare
HSERO_RS12640 +0.5 1.3 hypothetical protein compare
HSERO_RS16045 +0.5 1.3 cytochrome oxidase compare
HSERO_RS02215 +0.5 0.2 D-arabinitol 4-dehydrogenase compare
HSERO_RS09200 +0.5 2.0 glutathione ABC transporter permease compare
HSERO_RS16565 +0.5 0.8 hypothetical protein compare
HSERO_RS01460 +0.5 1.3 transcriptional regulator compare
HSERO_RS00130 +0.5 1.7 hypothetical protein compare
HSERO_RS04545 +0.5 1.2 integrase compare
HSERO_RS00405 +0.5 2.1 Fis family transcriptional regulator compare
HSERO_RS20935 +0.5 1.9 hypothetical protein compare
HSERO_RS10225 +0.5 3.9 flagellar hook protein FlgK compare
HSERO_RS05440 +0.5 0.8 hypothetical protein compare
HSERO_RS02250 +0.5 1.4 hypothetical protein compare
HSERO_RS15350 +0.5 0.9 membrane protein compare
HSERO_RS05680 +0.5 2.0 DNA-directed RNA polymerase subunit alpha compare
HSERO_RS19265 +0.5 0.9 LysR family transcriptional regulator compare
HSERO_RS12105 +0.5 2.2 RpiR family transcriptional regulator compare
HSERO_RS23070 +0.5 2.5 transcriptional regulator compare
HSERO_RS10250 +0.5 1.4 flagellar biosynthesis protein FliR compare
HSERO_RS18230 +0.5 1.2 pilus assembly protein compare
HSERO_RS05810 +0.4 1.0 sulfurtransferase compare
HSERO_RS11465 +0.4 1.0 sodium:proton antiporter compare
HSERO_RS19135 +0.4 0.9 exodeoxyribonuclease compare
HSERO_RS12280 +0.4 1.8 ABC transporter permease compare
HSERO_RS11325 +0.4 1.5 membrane protein compare
HSERO_RS17270 +0.4 3.5 glucan biosynthesis protein D compare
HSERO_RS16825 +0.4 1.0 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS19920 +0.4 2.6 protocatechuate 3,4-dioxygenase subunit beta compare
HSERO_RS22070 +0.4 1.9 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase compare
HSERO_RS00955 +0.4 2.0 Tail fiber protein compare
HSERO_RS08335 +0.4 1.5 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS04155 +0.4 0.7 hypothetical protein compare
HSERO_RS23420 +0.4 3.1 hypothetical protein compare
HSERO_RS18690 +0.4 1.5 short-chain dehydrogenase compare
HSERO_RS02805 +0.4 2.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
HSERO_RS09250 +0.4 1.2 hypothetical protein compare
HSERO_RS12205 +0.4 2.2 lipoprotein compare
HSERO_RS20250 +0.4 0.5 large conductance mechanosensitive channel protein MscL compare
HSERO_RS16835 +0.4 2.4 phosphatidylglycerophosphatase compare
HSERO_RS15705 +0.4 2.4 LuxR family transcriptional regulator compare
HSERO_RS12960 +0.4 1.2 hypothetical protein compare
HSERO_RS19280 +0.4 1.8 D-2-hydroxyacid dehydrogenase compare
HSERO_RS03475 +0.4 2.0 NUDIX hydrolase compare
HSERO_RS10185 +0.4 3.1 flagellar basal body rod protein FlgC compare
HSERO_RS00335 +0.4 1.6 hypothetical protein compare
HSERO_RS21620 +0.4 2.0 amino acid ABC transporter permease compare
HSERO_RS04455 +0.4 1.8 major tail tube protein compare
HSERO_RS08565 +0.4 2.5 RNA helicase compare
HSERO_RS01030 +0.4 1.9 tail-like protein compare
HSERO_RS11880 +0.4 0.7 hypothetical protein compare
HSERO_RS15895 +0.4 2.1 peptide ABC transporter permease compare
HSERO_RS23495 +0.4 1.0 alpha/beta hydrolase compare
HSERO_RS22750 +0.4 1.7 sugar ABC transporter ATP-binding protein compare
HSERO_RS11560 +0.4 1.5 hypothetical protein compare
HSERO_RS24015 +0.4 1.3 (2Fe-2S)-binding protein compare
HSERO_RS07255 +0.4 1.2 glutaminase compare
HSERO_RS15065 +0.4 1.0 laccase compare
HSERO_RS12785 +0.4 1.6 glutathione S-transferase compare
HSERO_RS23195 +0.4 1.4 LuxR family transcriptional regulator compare
HSERO_RS01345 +0.4 2.3 sugar ABC transporter substrate-binding protein compare
HSERO_RS23665 +0.4 1.5 phosphonate ABC transporter substrate-binding protein compare
HSERO_RS00355 +0.4 2.0 methyltransferase compare
HSERO_RS04045 +0.4 1.5 pilus assembly protein compare
HSERO_RS13435 +0.4 1.3 malonyl CoA-ACP transacylase compare
HSERO_RS03595 +0.4 1.0 cation transporter compare
HSERO_RS08155 +0.4 1.4 deacetylase compare
HSERO_RS19210 +0.4 1.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS22315 +0.4 1.2 hypothetical protein compare
HSERO_RS23830 +0.4 1.0 transcriptional regulator compare
HSERO_RS13105 +0.4 1.4 C4-dicarboxylate ABC transporter compare
HSERO_RS12475 +0.4 0.8 histidine kinase compare
HSERO_RS10200 +0.4 1.9 flagellar basal body rod protein FlgF compare
HSERO_RS11180 +0.4 1.6 sugar kinase compare
HSERO_RS09420 +0.4 2.1 HAD family hydrolase compare
HSERO_RS10840 +0.4 1.5 cyanophycin synthetase compare
HSERO_RS17570 +0.4 0.7 4-carboxymuconolactone decarboxylase compare
HSERO_RS17525 +0.4 1.6 PadR family transcriptional regulator compare
HSERO_RS10355 +0.4 1.1 flagellin compare
HSERO_RS10970 +0.4 1.1 NfeD family protein compare
HSERO_RS05330 +0.4 1.6 glucose dehydrogenase compare
HSERO_RS03145 +0.4 2.1 poly(A) polymerase compare
HSERO_RS15475 +0.4 1.5 GNAT family acetyltraansferase compare
HSERO_RS13675 +0.4 0.9 histidine kinase compare
HSERO_RS21070 +0.4 2.7 hypothetical protein compare
HSERO_RS21615 +0.4 2.4 ABC transporter substrate-binding protein compare
HSERO_RS00805 +0.4 0.9 preprotein translocase subunit SecB compare
HSERO_RS12675 +0.4 1.1 AraC family transcriptional regulator compare
HSERO_RS07355 +0.4 0.8 hypothetical protein compare
HSERO_RS09335 +0.3 0.9 DNA-3-methyladenine glycosylase compare
HSERO_RS16380 +0.3 0.9 hypothetical protein compare
HSERO_RS19255 +0.3 1.5 ABC transporter compare
HSERO_RS18530 +0.3 2.4 3-oxoacyl-ACP synthase compare
HSERO_RS00135 +0.3 1.9 hypothetical protein compare
HSERO_RS23950 +0.3 0.8 amino acid transporter LysE compare
HSERO_RS22010 +0.3 1.4 toxin RelE compare
HSERO_RS14030 +0.3 0.8 hypothetical protein compare
HSERO_RS23445 +0.3 0.7 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS04230 +0.3 0.7 LuxR family transcriptional regulator compare
HSERO_RS03620 +0.3 1.8 LysR family transcriptional regulator compare
HSERO_RS14235 +0.3 1.2 ferredoxin compare
HSERO_RS14305 +0.3 0.8 chemotaxis protein CheY compare
HSERO_RS22360 +0.3 1.4 lauroyl acyltransferase compare
HSERO_RS10195 +0.3 2.6 flagellar hook protein FlgE compare
HSERO_RS22580 +0.3 1.0 LysR family transcriptional regulator compare
HSERO_RS08455 +0.3 1.6 chemotaxis protein CheW compare
HSERO_RS15345 +0.3 1.5 cytochrome BD oxidase subunit II compare
HSERO_RS07840 +0.3 1.6 methionine ABC transporter substrate-binding protein compare
HSERO_RS03310 +0.3 1.0 hypothetical protein compare
HSERO_RS11595 +0.3 0.7 ArsR family transcriptional regulator compare
HSERO_RS19335 +0.3 1.3 ABC transporter permease compare
HSERO_RS23160 +0.3 1.3 short-chain dehydrogenase compare
HSERO_RS13395 +0.3 1.1 hydratase compare
HSERO_RS15915 +0.3 1.5 hypothetical protein compare
HSERO_RS01105 +0.3 0.9 hypothetical protein compare
HSERO_RS23600 +0.3 0.7 urea ABC transporter ATP-binding protein compare
HSERO_RS11220 +0.3 1.7 hypothetical protein compare
HSERO_RS10860 +0.3 1.8 RNA pseudouridylate synthase compare
HSERO_RS06035 +0.3 2.0 hypothetical protein compare
HSERO_RS02015 +0.3 1.2 peptidase M23 compare
HSERO_RS17785 +0.3 1.6 septum formation inhibitor Maf compare
HSERO_RS22100 +0.3 2.2 hypothetical protein compare
HSERO_RS02405 +0.3 1.8 multidrug transporter compare
HSERO_RS22875 +0.3 2.1 cysteine hydrolase compare
HSERO_RS16595 +0.3 0.9 hypothetical protein compare
HSERO_RS06015 +0.3 0.7 hisitidine kinase compare
HSERO_RS06735 +0.3 1.4 LysR family transcriptional regulator compare
HSERO_RS07515 +0.3 1.3 LacI family transcriptional regulator compare
HSERO_RS07790 +0.3 1.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient L-Serine in Herbaspirillum seropedicae SmR1

For nutrient L-Serine across organisms