Experiment set4IT048 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with 3-Acetylpyridine 0.02 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -7.1 -4.9 chromosomal replication initiator protein DnaA compare
BBR_RS10625 -3.9 -3.8 FHA domain-containing protein compare
BBR_RS20480 -3.7 -2.0 membrane protein compare
BBR_RS20435 -3.7 -2.0 CCA tRNA nucleotidyltransferase compare
BBR_RS11590 -3.5 -1.8 30S ribosomal protein S18 compare
BBR_RS18565 -3.2 -2.2 CHAP domain-containing protein compare
BBR_RS10620 -3.0 -5.5 phosphoprotein phosphatase compare
BBR_RS16750 -2.9 -2.8 ParA family protein compare
BBR_RS19125 -2.6 -10.9 hypothetical protein compare
BBR_RS18690 -2.3 -8.6 diacylglycerol kinase compare
BBR_RS16425 -2.3 -3.1 DUF3071 domain-containing protein compare
BBR_RS20885 -2.3 -1.7 hypothetical protein compare
BBR_RS14370 -2.3 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS12545 -2.2 -4.9 DUF4012 domain-containing protein compare
BBR_RS13030 -2.1 -1.5 cell division ATP-binding protein FtsE compare
BBR_RS15070 -2.1 -3.7 endolytic transglycosylase MltG compare
BBR_RS11720 -2.0 -5.6 DUF2469 domain-containing protein compare
BBR_RS14215 -1.9 -2.9 peptidase compare
BBR_RS16490 -1.9 -5.7 polyprenyl synthase compare
BBR_RS14540 -1.8 -3.0 Na+/H+ antiporter NhaA compare
BBR_RS17155 -1.8 -1.7 cell division protein SepF compare
BBR_RS12605 -1.8 -4.0 glycosyltransferase family 2 protein compare
BBR_RS11540 -1.8 -3.1 DUF1727 domain-containing protein compare
BBR_RS15520 -1.8 -3.8 shikimate 5-dehydrogenase compare
BBR_RS13035 -1.8 -1.2 ABC transporter permease compare
BBR_RS15785 -1.8 -2.6 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS19165 -1.8 -4.0 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12590 -1.7 -2.4 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19390 -1.7 -2.3 hypothetical protein compare
BBR_RS13040 -1.7 -1.2 CHAP domain-containing protein compare
BBR_RS15055 -1.7 -2.8 hypothetical protein compare
BBR_RS12235 -1.6 -1.5 hypothetical protein compare
BBR_RS18170 -1.6 -2.7 dihydropteroate synthase compare
BBR_RS15085 -1.6 -1.1 3-dehydroquinate synthase compare
BBR_RS18990 -1.6 -1.3 AbrB family transcriptional regulator compare
BBR_RS19190 -1.6 -6.6 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS20955 -1.6 -2.1 hypothetical protein compare
BBR_RS20455 -1.6 -7.0 thioredoxin-disulfide reductase compare
BBR_RS10940 -1.6 -9.9 DedA family protein compare
BBR_RS14190 -1.5 -5.9 transcriptional regulator compare
BBR_RS19450 -1.5 -1.4 GTPase ObgE compare
BBR_RS21015 -1.5 -3.1 hypothetical protein compare
BBR_RS20465 -1.5 -5.8 chromosome partitioning protein compare
BBR_RS15425 -1.5 -2.9 aspartate carbamoyltransferase compare
BBR_RS13735 -1.5 -1.7 Lon protease compare
BBR_RS14265 -1.4 -3.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18215 -1.4 -7.1 AI-2E family transporter compare
BBR_RS19815 -1.4 -11.6 ABC transporter permease compare
BBR_RS18180 -1.4 -7.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS13770 -1.4 -2.6 DNA repair protein RecO compare
BBR_RS14140 -1.4 -2.2 Ppx/GppA family phosphatase compare
BBR_RS14205 -1.3 -2.5 hypothetical protein compare
BBR_RS17510 -1.3 -5.4 VWA domain-containing protein compare
BBR_RS16135 -1.3 -2.4 peptide deformylase compare
BBR_RS19375 -1.3 -1.7 acyl-CoA carboxylase subunit beta compare
BBR_RS16640 -1.2 -2.7 ABC transporter permease compare
BBR_RS16675 -1.2 -3.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS20460 -1.2 -3.8 chromosome partitioning protein ParB compare
BBR_RS19120 -1.2 -6.9 helicase compare
BBR_RS15050 -1.2 -1.8 DUF948 domain-containing protein compare
BBR_RS10580 -1.2 -1.6 septation inhibitor protein compare
BBR_RS15080 -1.2 -2.3 chorismate synthase compare
BBR_RS19820 -1.2 -9.6 ATP-binding protein of ABC transporter system compare
BBR_RS18635 -1.1 -5.2 PspC domain-containing protein compare
BBR_RS10285 -1.1 -2.0 membrane protein compare
BBR_RS16685 -1.1 -1.6 alcohol dehydrogenase compare
BBR_RS14240 -1.1 -4.5 1,4-alpha-glucan branching protein GlgB compare
BBR_RS17505 -1.1 -6.1 VWA domain-containing protein compare
BBR_RS12720 -1.1 -1.9 hypothetical protein compare
BBR_RS13070 -1.1 -1.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19435 -1.1 -1.9 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS11175 -1.1 -7.4 penicillin-binding protein compare
BBR_RS14070 -1.1 -4.6 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS10900 -1.1 -1.2 molecular chaperone DnaK compare
BBR_RS16625 -1.1 -3.1 DUF3710 domain-containing protein compare
BBR_RS13640 -1.0 -3.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS20720 -1.0 -3.4 DUF4422 domain-containing protein compare
BBR_RS16965 -1.0 -0.7 ATP-dependent DNA helicase compare
BBR_RS14330 -1.0 -0.9 glycogen debranching enzyme GlgX compare
BBR_RS19535 -1.0 -7.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS14230 -1.0 -3.4 HAMP domain-containing histidine kinase compare
BBR_RS12045 -1.0 -2.8 hypothetical protein compare
BBR_RS18175 -1.0 -1.4 GTP cyclohydrolase I FolE compare
BBR_RS15090 -1.0 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS11675 -1.0 -1.4 hypothetical protein compare
BBR_RS19540 -1.0 -1.6 homoserine dehydrogenase compare
BBR_RS10615 -1.0 -4.3 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS11770 -1.0 -2.9 chorismate mutase compare
BBR_RS16220 -1.0 -1.0 DNA cytosine methyltransferase compare
BBR_RS20440 -1.0 -4.0 NUDIX hydrolase compare
BBR_RS10740 -0.9 -1.3 tRNA-Gly compare
BBR_RS12810 -0.9 -5.2 hypothetical protein compare
BBR_RS14985 -0.9 -2.0 ATP-dependent DNA helicase PcrA compare
BBR_RS17500 -0.9 -5.1 hypothetical protein compare
BBR_RS20800 -0.9 -1.6 hypothetical protein compare
BBR_RS17290 -0.9 -4.4 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS13805 -0.9 -1.6 hypothetical protein compare
BBR_RS13630 -0.9 -2.9 carbamoyl-phosphate synthase small subunit compare
BBR_RS19740 -0.9 -7.7 DUF2142 domain-containing protein compare
BBR_RS17515 -0.9 -4.5 hypothetical protein compare
BBR_RS14290 -0.9 -3.8 TerC family protein compare
BBR_RS19260 -0.9 -6.7 hypothetical protein compare
BBR_RS20415 -0.8 -6.9 G5 domain-containing protein compare
BBR_RS11510 -0.8 -1.8 signal recognition particle-docking protein FtsY compare
BBR_RS17495 -0.8 -5.1 DUF58 domain-containing protein compare
BBR_RS16530 -0.8 -3.0 recombinase RecA compare
BBR_RS18050 -0.8 -1.6 threonylcarbamoyl-AMP synthase compare
BBR_RS19155 -0.8 -4.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS11240 -0.8 -2.8 GtrA family protein compare
BBR_RS15750 -0.8 -1.1 hypothetical protein compare
BBR_RS12245 -0.8 -0.8 polyribonucleotide nucleotidyltransferase compare
BBR_RS16905 -0.8 -3.2 hypothetical protein compare
BBR_RS15655 -0.8 -2.2 Holliday junction branch migration protein RuvA compare
BBR_RS18220 -0.8 -5.2 glycosyltransferase family 2 protein compare
BBR_RS12820 -0.8 -5.9 hypothetical protein compare
BBR_RS17490 -0.8 -5.4 MoxR family ATPase compare
BBR_RS17135 -0.7 -0.7 RluA family pseudouridine synthase compare
BBR_RS13450 -0.7 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS16755 -0.7 -3.3 site-specific tyrosine recombinase XerD compare
BBR_RS13455 -0.7 -2.0 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13490 -0.7 -1.0 30S ribosomal protein S7 compare
BBR_RS15860 -0.7 -0.7 DUF2316 domain-containing protein compare
BBR_RS19755 -0.7 -4.6 glycosyl transferase compare
BBR_RS16430 -0.7 -1.6 nucleotide pyrophosphatase compare
BBR_RS12555 -0.7 -3.9 protein-tyrosine-phosphatase compare
BBR_RS13635 -0.7 -3.5 carbamoyl-phosphate synthase large subunit compare
BBR_RS18735 -0.7 -3.8 hypothetical protein compare
BBR_RS14615 -0.7 -4.5 histidine kinase compare
BBR_RS14625 -0.7 -3.1 pyrroline-5-carboxylate reductase compare
BBR_RS16635 -0.7 -1.4 ABC transporter ATP-binding protein compare
BBR_RS16655 -0.7 -2.6 tyrosine recombinase XerC compare
BBR_RS11185 -0.7 -1.5 type I DNA topoisomerase compare
BBR_RS20925 -0.7 -1.3 amino acid permease compare
BBR_RS12375 -0.7 -0.8 pantetheine-phosphate adenylyltransferase compare
BBR_RS10660 -0.7 -5.7 esterase compare
BBR_RS18120 -0.7 -1.8 hypothetical protein compare
BBR_RS13370 -0.6 -1.4 phosphoribosylamine--glycine ligase compare
BBR_RS14550 -0.6 -2.8 hypothetical protein compare
BBR_RS19465 -0.6 -2.9 ribonuclease E/G compare
BBR_RS10915 -0.6 -2.7 MerR family DNA-binding transcriptional regulator compare
BBR_RS17040 -0.6 -2.0 hypothetical protein compare
BBR_RS10755 -0.6 -2.7 adenylosuccinate synthase compare
BBR_RS15880 -0.6 -1.5 hypothetical protein compare
BBR_RS16950 -0.6 -1.5 hypothetical protein compare
BBR_RS16610 -0.6 -2.0 hypothetical protein compare
BBR_RS12450 -0.6 -1.7 signal peptidase I compare
BBR_RS16240 -0.6 -2.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS21050 -0.6 -2.3 hypothetical protein compare
BBR_RS19795 -0.6 -5.0 hypothetical protein compare
BBR_RS16255 -0.6 -1.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS14200 -0.6 -1.8 WhiB family transcriptional regulator compare
BBR_RS19160 -0.6 -0.8 phosphate ABC transporter permease subunit PstC compare
BBR_RS20450 -0.6 -5.2 murein biosynthesis integral membrane protein MurJ compare
BBR_RS13980 -0.6 -2.9 HD domain-containing protein compare
BBR_RS20400 -0.6 -5.5 serine/threonine protein kinase compare
BBR_RS11470 -0.6 -0.5 6-phosphogluconolactonase compare
BBR_RS18575 -0.6 -1.9 hypothetical protein compare
BBR_RS12980 -0.6 -4.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16985 -0.6 -1.8 transcriptional repressor LexA compare
BBR_RS15440 -0.6 -1.8 orotidine-5'-phosphate decarboxylase compare
BBR_RS16975 -0.5 -1.5 transcriptional repressor NrdR compare
BBR_RS12785 -0.5 -1.9 transcriptional regulator compare
BBR_RS15695 -0.5 -2.5 membrane channel protein compare
BBR_RS12305 -0.5 -2.9 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS12925 -0.5 -2.0 hypothetical protein compare
BBR_RS20750 -0.5 -1.5 GntR family transcriptional regulator compare
BBR_RS11180 -0.5 -4.2 phosphatase PAP2 family protein compare
BBR_RS20825 -0.5 -1.3 hypothetical protein compare
BBR_RS15445 -0.5 -2.1 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS16540 -0.5 -2.3 XRE family transcriptional regulator compare
BBR_RS19750 -0.5 -4.3 LTA synthase family protein compare
BBR_RS15385 -0.5 -1.3 hypothetical protein compare
BBR_RS12500 -0.5 -0.5 sugar ABC transporter permease compare
BBR_RS20420 -0.5 -3.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS18140 -0.5 -1.0 tRNA-Asp compare
BBR_RS14475 -0.5 -2.7 formate C-acetyltransferase compare
BBR_RS10990 -0.5 -2.5 recombination protein RecR compare
BBR_RS20775 -0.5 -1.1 DUF4230 domain-containing protein compare
BBR_RS12975 -0.5 -3.2 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16845 -0.5 -0.7 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS19095 -0.5 -3.7 magnesium transporter compare
BBR_RS13400 -0.5 -2.1 DNA-deoxyinosine glycosylase compare
BBR_RS13750 -0.4 -0.9 DivIVA domain-containing protein compare
BBR_RS15935 -0.4 -2.2 hypothetical protein compare
BBR_RS14080 -0.4 -1.2 hypothetical protein compare
BBR_RS13505 -0.4 -2.0 DUF4391 domain-containing protein compare
BBR_RS14210 -0.4 -0.3 hypothetical protein compare
BBR_RS13945 -0.4 -1.6 Txe/YoeB family addiction module toxin compare
BBR_RS14480 -0.4 -2.1 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS19100 -0.4 -3.7 N-acetyltransferase compare
BBR_RS18725 -0.4 -1.2 ribonuclease HI compare
BBR_RS20700 -0.4 -1.3 ribulose phosphate epimerase compare
BBR_RS16615 -0.4 -2.9 class I SAM-dependent RNA methyltransferase compare
BBR_RS15915 -0.4 -0.4 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS16175 -0.4 -1.3 DNA integration/recombination/inversion protein compare
BBR_RS14075 -0.4 -2.5 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS14495 -0.4 -1.2 trigger factor compare
BBR_RS10905 -0.4 -2.1 nucleotide exchange factor GrpE compare
BBR_RS18325 -0.4 -0.9 DNA-binding protein compare
BBR_RS17880 -0.4 -0.9 nucleotidyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress 3-acetylpyridine across organisms