Experiment set4IT047 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with 3-Acetylpyridine 0.04 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS19395 -5.9 -1.9 hypothetical protein compare
BBR_RS10255 -5.3 -2.3 chromosomal replication initiator protein DnaA compare
BBR_RS14275 -5.3 -1.0 30S ribosomal protein S1 compare
BBR_RS20810 -5.3 -1.8 pirin compare
BBR_RS15050 -5.2 -2.0 DUF948 domain-containing protein compare
BBR_RS15760 -5.0 -2.4 MerR family transcriptional regulator compare
BBR_RS16400 -5.0 -1.6 hypothetical protein compare
BBR_RS13735 -4.9 -0.9 Lon protease compare
BBR_RS13960 -4.8 -1.3 thiamine biosynthesis protein ThiS compare
BBR_RS13490 -4.8 -0.9 30S ribosomal protein S7 compare
BBR_RS14085 -4.7 -1.3 nicotinate-nucleotide adenylyltransferase compare
BBR_RS13805 -4.7 -1.5 hypothetical protein compare
BBR_RS14080 -4.6 -1.8 hypothetical protein compare
BBR_RS20795 -4.4 -1.2 cystathionine gamma-lyase compare
BBR_RS13830 -4.3 -0.8 DUF4191 domain-containing protein compare
BBR_RS19270 -4.2 -0.8 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS12235 -4.1 -0.8 hypothetical protein compare
BBR_RS14765 -4.1 -1.1 hypothetical protein compare
BBR_RS14280 -4.1 -1.0 dephospho-CoA kinase compare
BBR_RS10285 -4.0 -1.3 membrane protein compare
BBR_RS12245 -3.9 -1.1 polyribonucleotide nucleotidyltransferase compare
BBR_RS15070 -3.8 -2.3 endolytic transglycosylase MltG compare
BBR_RS16685 -3.8 -1.0 alcohol dehydrogenase compare
BBR_RS12500 -3.8 -0.7 sugar ABC transporter permease compare
BBR_RS11540 -3.8 -1.6 DUF1727 domain-containing protein compare
BBR_RS20705 -3.7 -1.4 hypothetical protein compare
BBR_RS19905 -3.7 -0.7 methionine--tRNA ligase compare
BBR_RS19640 -3.7 -0.7 phosphoesterase compare
BBR_RS14260 -3.6 -1.0 ABC transporter ATP-binding protein compare
BBR_RS20480 -3.5 -0.7 membrane protein compare
BBR_RS20435 -3.5 -0.7 CCA tRNA nucleotidyltransferase compare
BBR_RS11590 -3.3 -0.6 30S ribosomal protein S18 compare
BBR_RS20850 -3.3 -0.6 resolvase compare
BBR_RS12545 -3.2 -2.2 DUF4012 domain-containing protein compare
BBR_RS13375 -3.2 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS19355 -3.1 -1.0 tRNA-Gly compare
BBR_RS18175 -3.1 -0.8 GTP cyclohydrolase I FolE compare
BBR_RS15090 -3.1 -0.8 type II 3-dehydroquinate dehydratase compare
BBR_RS16430 -3.1 -1.6 nucleotide pyrophosphatase compare
BBR_RS20830 -2.9 -2.0 hypothetical protein compare
BBR_RS14140 -2.8 -1.2 Ppx/GppA family phosphatase compare
BBR_RS11240 -2.8 -1.7 GtrA family protein compare
BBR_RS15860 -2.8 -0.8 DUF2316 domain-containing protein compare
BBR_RS14215 -2.7 -1.4 peptidase compare
BBR_RS18140 -2.7 -0.9 tRNA-Asp compare
BBR_RS16255 -2.7 -1.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS20790 -2.7 -2.3 hypothetical protein compare
BBR_RS16555 -2.7 -0.5 DNA translocase FtsK compare
BBR_RS14985 -2.7 -2.3 ATP-dependent DNA helicase PcrA compare
BBR_RS16845 -2.5 -1.0 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS18690 -2.5 -6.2 diacylglycerol kinase compare
BBR_RS15550 -2.5 -2.8 L-lactate dehydrogenase compare
BBR_RS10620 -2.5 -2.9 phosphoprotein phosphatase compare
BBR_RS19375 -2.4 -0.9 acyl-CoA carboxylase subunit beta compare
BBR_RS15805 -2.4 -4.0 prolipoprotein diacylglyceryl transferase compare
BBR_RS15085 -2.4 -0.8 3-dehydroquinate synthase compare
BBR_RS15845 -2.4 -0.6 hypothetical protein compare
BBR_RS20460 -2.3 -1.6 chromosome partitioning protein ParB compare
BBR_RS13125 -2.3 -0.6 ABC transporter permease compare
BBR_RS11145 -2.3 -1.5 hypothetical protein compare
BBR_RS14190 -2.2 -4.9 transcriptional regulator compare
BBR_RS13400 -2.2 -3.2 DNA-deoxyinosine glycosylase compare
BBR_RS15915 -2.2 -0.6 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS15130 -2.1 -1.3 metal-sulfur cluster assembly factor compare
BBR_RS19070 -2.1 -0.6 50S ribosomal protein L33 compare
BBR_RS16635 -2.1 -1.0 ABC transporter ATP-binding protein compare
BBR_RS18795 -2.1 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS11975 -2.0 -2.2 hypothetical protein compare
BBR_RS13215 -2.0 -1.1 hypothetical protein compare
BBR_RS17640 -2.0 -0.9 DNA-directed RNA polymerase subunit omega compare
BBR_RS13300 -2.0 -0.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS21165 -2.0 -1.0 hypothetical protein compare
BBR_RS19325 -2.0 -1.8 hypothetical protein compare
BBR_RS11675 -2.0 -0.7 hypothetical protein compare
BBR_RS14040 -1.9 -2.0 GNAT family N-acetyltransferase compare
BBR_RS19760 -1.9 -0.7 polysaccharide ABC transporter ATPase compare
BBR_RS17480 -1.8 -3.3 hypothetical protein compare
BBR_RS18050 -1.8 -0.9 threonylcarbamoyl-AMP synthase compare
BBR_RS12375 -1.8 -0.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS20720 -1.7 -2.5 DUF4422 domain-containing protein compare
BBR_RS13945 -1.7 -1.2 Txe/YoeB family addiction module toxin compare
BBR_RS14700 -1.7 -1.6 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS20765 -1.7 -2.5 50S ribosomal protein L31 compare
BBR_RS20860 -1.7 -1.5 hypothetical protein compare
BBR_RS13740 -1.7 -2.2 DUF3052 domain-containing protein compare
BBR_RS19945 -1.6 -3.7 MarR family transcriptional regulator compare
BBR_RS15395 -1.6 -4.2 tRNA (adenine-N1)-methyltransferase compare
BBR_RS11950 -1.6 -1.5 tRNA-Tyr compare
BBR_RS11210 -1.6 -5.4 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18035 -1.6 -1.5 oligoribonuclease compare
BBR_RS15190 -1.5 -2.1 NAD(P) transhydrogenase subunit alpha compare
BBR_RS14520 -1.5 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BBR_RS18320 -1.5 -2.6 hypothetical protein compare
BBR_RS16940 -1.5 -1.5 hypothetical protein compare
BBR_RS13895 -1.5 -2.3 acetylglutamate kinase compare
BBR_RS15660 -1.5 -2.3 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS21055 -1.5 -0.9 hypothetical protein compare
BBR_RS15555 -1.5 -1.7 HAD family hydrolase compare
BBR_RS13005 -1.5 -6.0 aminopeptidase N compare
BBR_RS12480 -1.5 -2.1 arabinose-proton symporter compare
BBR_RS18525 -1.5 -1.5 hypothetical protein compare
BBR_RS14870 -1.4 -1.8 histidine phosphatase family protein compare
BBR_RS19740 -1.4 -5.8 DUF2142 domain-containing protein compare
BBR_RS17375 -1.4 -2.4 amino acid ABC transporter ATP-binding protein compare
BBR_RS14735 -1.4 -2.8 TetR family transcriptional regulator compare
BBR_RS15320 -1.4 -1.3 hypothetical protein compare
BBR_RS11175 -1.4 -5.4 penicillin-binding protein compare
BBR_RS19815 -1.4 -6.6 ABC transporter permease compare
BBR_RS14265 -1.4 -3.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS14230 -1.3 -2.0 HAMP domain-containing histidine kinase compare
BBR_RS19125 -1.3 -3.5 hypothetical protein compare
BBR_RS16065 -1.3 -1.5 DUF488 domain-containing protein compare
BBR_RS11770 -1.3 -1.9 chorismate mutase compare
BBR_RS16750 -1.3 -0.9 ParA family protein compare
BBR_RS12985 -1.3 -3.2 MFS transporter compare
BBR_RS16425 -1.3 -1.0 DUF3071 domain-containing protein compare
BBR_RS17510 -1.3 -2.4 VWA domain-containing protein compare
BBR_RS17475 -1.3 -2.0 cold-shock protein compare
BBR_RS12810 -1.3 -3.7 hypothetical protein compare
BBR_RS14540 -1.3 -0.9 Na+/H+ antiporter NhaA compare
BBR_RS16535 -1.2 -1.0 DUF3046 domain-containing protein compare
BBR_RS20465 -1.2 -3.8 chromosome partitioning protein compare
BBR_RS14840 -1.2 -1.7 IS3 family transposase compare
BBR_RS14240 -1.2 -2.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS12710 -1.2 -1.3 hypothetical protein compare
BBR_RS21035 -1.2 -1.6 AMMECR1 domain-containing protein compare
BBR_RS19155 -1.2 -2.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS18735 -1.2 -3.5 hypothetical protein compare
BBR_RS17495 -1.1 -3.0 DUF58 domain-containing protein compare
BBR_RS12505 -1.1 -1.0 ABC transporter permease compare
BBR_RS14655 -1.1 -2.2 AraC family transcriptional regulator compare
BBR_RS16200 -1.1 -3.0 zinc ribbon domain-containing protein compare
BBR_RS14775 -1.1 -1.3 hypothetical protein compare
BBR_RS18635 -1.1 -1.8 PspC domain-containing protein compare
BBR_RS17865 -1.1 -1.8 MarR family transcriptional regulator compare
BBR_RS14300 -1.1 -2.2 NUDIX hydrolase compare
BBR_RS17350 -1.1 -2.3 Lysine exporter protein compare
BBR_RS19820 -1.1 -4.6 ATP-binding protein of ABC transporter system compare
BBR_RS16250 -1.1 -1.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS10720 -1.1 -4.3 PDZ domain-containing protein compare
BBR_RS20785 -1.1 -0.8 PadR family transcriptional regulator compare
BBR_RS18725 -1.1 -1.0 ribonuclease HI compare
BBR_RS18955 -1.1 -4.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS18325 -1.1 -1.3 DNA-binding protein compare
BBR_RS13330 -1.1 -1.5 hypothetical protein compare
BBR_RS20835 -1.1 -1.1 hypothetical protein compare
BBR_RS12840 -1.0 -2.9 DUF4916 domain-containing protein compare
BBR_RS12915 -1.0 -1.1 glycine synthesis protein GlyXS (from data) compare
BBR_RS14600 -1.0 -2.7 ABC transporter ATP-binding protein compare
BBR_RS15940 -1.0 -2.2 hypothetical protein compare
BBR_RS19445 -1.0 -4.7 glutamate 5-kinase compare
BBR_RS18555 -1.0 -2.8 NlpC/P60 family protein compare
BBR_RS19450 -1.0 -0.3 GTPase ObgE compare
BBR_RS15180 -1.0 -2.1 long-chain fatty acid--CoA ligase compare
BBR_RS19435 -1.0 -0.5 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS19535 -1.0 -4.4 homoserine kinase compare
BBR_RS12820 -1.0 -2.4 hypothetical protein compare
BBR_RS12995 -1.0 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS21000 -1.0 -0.7 hypothetical protein compare
BBR_RS19655 -1.0 -3.2 hypothetical protein compare
BBR_RS17040 -1.0 -1.4 hypothetical protein compare
BBR_RS14950 -0.9 -1.5 Pyrazinamidase/Nicotinamidase compare
BBR_RS12305 -0.9 -2.5 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS13520 -0.9 -1.5 polysaccharide synthesis protein GtrA compare
BBR_RS14810 -0.9 -2.6 ROK family protein compare
BBR_RS11205 -0.9 -0.8 HPr family phosphocarrier protein compare
BBR_RS14685 -0.9 -1.2 YccF domain-containing protein compare
BBR_RS12830 -0.9 -2.2 G5 domain-containing protein compare
BBR_RS11505 -0.9 -4.1 TetR/AcrR family transcriptional regulator compare
BBR_RS20240 -0.9 -4.8 hypothetical protein compare
BBR_RS13550 -0.9 -2.1 DUF47 domain-containing protein compare
BBR_RS20655 -0.9 -1.3 hypothetical protein compare
BBR_RS17150 -0.9 -1.0 YggT family protein compare
BBR_RS16010 -0.9 -1.2 hypothetical protein compare
BBR_RS17930 -0.9 -1.7 flavodoxin family protein compare
BBR_RS10580 -0.9 -0.8 septation inhibitor protein compare
BBR_RS13905 -0.9 -1.2 ornithine carbamoyltransferase compare
BBR_RS10560 -0.9 -2.9 hypothetical protein compare
BBR_RS17115 -0.8 -1.8 aldo/keto reductase compare
BBR_RS17550 -0.8 -2.5 Pup--protein ligase compare
BBR_RS15520 -0.8 -1.0 shikimate 5-dehydrogenase compare
BBR_RS16195 -0.8 -1.0 hypothetical protein compare
BBR_RS12910 -0.8 -4.3 galactokinase compare
BBR_RS12555 -0.8 -1.7 protein-tyrosine-phosphatase compare
BBR_RS15985 -0.8 -2.4 IS30 family transposase compare
BBR_RS19055 -0.8 -0.5 ferredoxin family protein compare
BBR_RS18530 -0.8 -1.5 low molecular weight phosphotyrosine protein phosphatase compare
BBR_RS11500 -0.8 -2.7 glycosyltransferase family 2 protein compare
BBR_RS13075 -0.8 -1.5 23S rRNA pseudouridylate synthase compare
BBR_RS10565 -0.8 -5.2 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS18130 -0.8 -2.8 glucokinase compare
BBR_RS13435 -0.8 -1.9 hypothetical protein compare
BBR_RS13080 -0.8 -1.5 LacI family DNA-binding transcriptional regulator compare
BBR_RS14370 -0.8 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS18750 -0.8 -2.2 pseudouridine synthase compare
BBR_RS16655 -0.8 -1.2 tyrosine recombinase XerC compare
BBR_RS19645 -0.8 -3.1 RNA degradosome polyphosphate kinase compare
BBR_RS20970 -0.8 -1.5 integrase compare
BBR_RS10660 -0.8 -3.7 esterase compare
BBR_RS20455 -0.8 -1.9 thioredoxin-disulfide reductase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress 3-acetylpyridine across organisms