Experiment set4IT046 for Herbaspirillum seropedicae SmR1

Compare to:

Defined media with L-Histidine

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS02215 +1.2 0.6 D-arabinitol 4-dehydrogenase compare
HSERO_RS10275 +1.1 3.7 flagellar motor switch protein FliM compare
HSERO_RS18725 +1.1 3.1 transcriptional regulator compare
HSERO_RS10310 +1.1 3.7 flagellar M-ring protein FliF compare
HSERO_RS10260 +1.0 7.4 flagellar biosynthesis protein FliP compare
HSERO_RS14975 +1.0 4.6 flagellar motor protein MotA compare
HSERO_RS10145 +1.0 7.4 flagellar biosynthesis protein FlhA compare
HSERO_RS11465 +1.0 2.7 sodium:proton antiporter compare
HSERO_RS10175 +1.0 5.7 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10605 +1.0 1.7 membrane protein compare
HSERO_RS10140 +0.9 4.8 flagellar biosynthesis protein FlhB compare
HSERO_RS10255 +0.9 1.9 flagellar biosynthesis protein FliQ compare
HSERO_RS10265 +0.9 4.4 flagellar biosynthesis protein FliO compare
HSERO_RS10280 +0.9 1.7 flagellar basal body protein FliL compare
HSERO_RS10305 +0.9 4.7 flagellar motor switch protein FliG compare
HSERO_RS10215 +0.8 3.4 flagellar P-ring protein FlgI compare
HSERO_RS10295 +0.8 4.1 ATP synthase compare
HSERO_RS09420 +0.8 3.9 HAD family hydrolase compare
HSERO_RS10150 +0.8 5.2 flagellar biosynthesis regulator FlhF compare
HSERO_RS10960 +0.8 2.9 PEP synthetase regulatory protein compare
HSERO_RS19630 +0.8 0.7 AMP nucleosidase compare
HSERO_RS10180 +0.8 1.6 flagellar biosynthesis protein FlgB compare
HSERO_RS14985 +0.8 4.2 transcriptional regulator compare
HSERO_RS02770 +0.8 1.6 hypothetical protein compare
HSERO_RS14970 +0.8 5.0 flagellar motor protein MotB compare
HSERO_RS10200 +0.8 4.9 flagellar basal body rod protein FlgF compare
HSERO_RS13885 +0.8 5.1 histidine kinase compare
HSERO_RS14185 +0.7 1.4 FeS cluster assembly scaffold IscU compare
HSERO_RS10285 +0.7 2.8 flagellar hook-length control protein compare
HSERO_RS05810 +0.7 2.1 sulfurtransferase compare
HSERO_RS11830 +0.7 1.3 hypothetical protein compare
HSERO_RS05855 +0.7 3.9 flagellar motor protein MotA compare
HSERO_RS12220 +0.7 1.1 dehydrogenase compare
HSERO_RS18090 +0.7 1.3 II family cellulose-binding protein compare
HSERO_RS10290 +0.7 3.7 flagellar biosynthesis protein FliJ compare
HSERO_RS21135 +0.7 1.2 transcriptional regulator compare
HSERO_RS20325 +0.7 2.8 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS04165 +0.7 1.3 hypothetical protein compare
HSERO_RS01985 +0.6 2.0 energy transducer TonB compare
HSERO_RS10210 +0.6 1.7 flagellar L-ring protein FlgH compare
HSERO_RS16490 +0.6 5.1 FimV compare
HSERO_RS21230 +0.6 1.8 GntR family transcriptional regulator compare
HSERO_RS12770 +0.6 0.6 3-oxoacyl-ACP reductase compare
HSERO_RS22175 +0.6 0.9 hypothetical protein compare
HSERO_RS05970 +0.6 1.2 ABC transporter compare
HSERO_RS05860 +0.6 2.0 biopolymer transporter ExbD compare
HSERO_RS13890 +0.6 3.1 LuxR family transcriptional regulator compare
HSERO_RS04435 +0.6 2.1 oxidoreductase compare
HSERO_RS21745 +0.6 1.3 5'-methylthioadenosine nucleosidase compare
HSERO_RS13880 +0.6 0.9 hypothetical protein compare
HSERO_RS15065 +0.6 1.8 laccase compare
HSERO_RS15205 +0.6 1.6 LysR family transcriptional regulator compare
HSERO_RS09215 +0.6 1.8 D-aminopeptidase compare
HSERO_RS09290 +0.6 2.5 ribonuclease R compare
HSERO_RS03135 +0.6 2.8 diguanylate cyclase compare
HSERO_RS22095 +0.6 1.3 hypothetical protein compare
HSERO_RS19275 +0.6 1.4 acyl-CoA hydrolase compare
HSERO_RS13340 +0.6 1.1 hypothetical protein compare
HSERO_RS09375 +0.6 1.6 hypothetical protein compare
HSERO_RS13040 +0.6 1.5 hypothetical protein compare
HSERO_RS12825 +0.6 1.3 ABC transporter permease compare
HSERO_RS10225 +0.6 4.0 flagellar hook protein FlgK compare
HSERO_RS05390 +0.6 1.3 twitching motility protein PilT compare
HSERO_RS11345 +0.6 1.3 hypothetical protein compare
HSERO_RS15930 +0.5 3.2 hypothetical protein compare
HSERO_RS04230 +0.5 1.8 LuxR family transcriptional regulator compare
HSERO_RS04045 +0.5 2.2 pilus assembly protein compare
HSERO_RS09835 +0.5 2.0 hypothetical protein compare
HSERO_RS20320 +0.5 2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS22430 +0.5 2.8 TonB-dependent receptor compare
HSERO_RS23445 +0.5 1.2 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS10325 +0.5 2.3 flagellar biosynthesis protein compare
HSERO_RS20345 +0.5 1.7 histidinol dehydrogenase compare
HSERO_RS13845 +0.5 1.1 hypothetical protein compare
HSERO_RS02225 +0.5 2.2 acetyltransferase compare
HSERO_RS21240 +0.5 2.1 polar amino acid ABC transporter permease compare
HSERO_RS11165 +0.5 1.9 arylesterase compare
HSERO_RS22995 +0.5 1.4 antitoxin compare
HSERO_RS05990 +0.5 1.9 hypothetical protein compare
HSERO_RS12645 +0.5 1.9 methyltransferase compare
HSERO_RS16835 +0.5 1.8 phosphatidylglycerophosphatase compare
HSERO_RS14830 +0.5 3.4 RNA polymerase sigma factor RpoS compare
HSERO_RS00810 +0.5 1.1 glutaredoxin compare
HSERO_RS01915 +0.5 3.6 membrane protein compare
HSERO_RS14030 +0.5 1.8 hypothetical protein compare
HSERO_RS02955 +0.5 2.6 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS20315 +0.5 2.4 imidazole glycerol phosphate synthase compare
HSERO_RS14350 +0.5 1.8 cysteine desulfurase compare
HSERO_RS07625 +0.5 1.1 tryptophanyl-tRNA synthetase compare
HSERO_RS16405 +0.5 1.9 peptidase M50 compare
HSERO_RS15340 +0.5 2.3 cytochrome BD oxidase subunit I compare
HSERO_RS08155 +0.5 1.8 deacetylase compare
HSERO_RS00060 +0.5 1.5 hypothetical protein compare
HSERO_RS11880 +0.5 0.9 hypothetical protein compare
HSERO_RS02100 +0.5 1.1 4-oxalocrotonate decarboxylase compare
HSERO_RS02105 +0.5 1.2 hypothetical protein compare
HSERO_RS10165 +0.5 0.8 flagellar biosynthesis protein compare
HSERO_RS10250 +0.5 2.2 flagellar biosynthesis protein FliR compare
HSERO_RS12655 +0.5 1.5 pirin compare
HSERO_RS06640 +0.5 2.4 N-carbamoylsarcosine amidase compare
HSERO_RS07820 +0.5 1.5 chemotaxis protein CheY compare
HSERO_RS20825 +0.5 1.2 ABC transporter permease compare
HSERO_RS16380 +0.5 1.3 hypothetical protein compare
HSERO_RS10765 +0.5 1.2 hypothetical protein compare
HSERO_RS09205 +0.5 1.2 glutathione ABC transporter permease compare
HSERO_RS12880 +0.5 1.9 spore coat protein compare
HSERO_RS01505 +0.5 1.5 transketolase compare
HSERO_RS10840 +0.5 2.1 cyanophycin synthetase compare
HSERO_RS18845 +0.5 1.0 hypothetical protein compare
HSERO_RS16140 +0.5 1.7 ADP-ribose pyrophosphatase compare
HSERO_RS10780 +0.5 1.0 glutathione ABC transporter ATP-binding protein compare
HSERO_RS07175 +0.4 1.6 hypothetical protein compare
HSERO_RS20065 +0.4 1.6 hypothetical protein compare
HSERO_RS02735 +0.4 0.5 hypothetical protein compare
HSERO_RS15640 +0.4 2.2 phosphinothricin acetyltransferase compare
HSERO_RS22620 +0.4 1.6 membrane protein compare
HSERO_RS01455 +0.4 0.6 hypothetical protein compare
HSERO_RS12970 +0.4 2.1 histidine kinase compare
HSERO_RS08075 +0.4 0.8 ferredoxin compare
HSERO_RS18105 +0.4 1.0 hypothetical protein compare
HSERO_RS04510 +0.4 1.7 tail protein compare
HSERO_RS22500 +0.4 1.5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS18300 +0.4 2.2 LysR family transcriptional regulator compare
HSERO_RS19720 +0.4 1.4 glyoxalase compare
HSERO_RS14150 +0.4 1.0 RNA polymerase sigma factor compare
HSERO_RS10205 +0.4 2.8 flagellar basal body rod protein FlgG compare
HSERO_RS03910 +0.4 1.0 hypothetical protein compare
HSERO_RS02775 +0.4 0.8 hypothetical protein compare
HSERO_RS10195 +0.4 2.8 flagellar hook protein FlgE compare
HSERO_RS09875 +0.4 1.2 hypothetical protein compare
HSERO_RS12295 +0.4 1.1 histidine kinase compare
HSERO_RS14110 +0.4 1.8 protease TldD compare
HSERO_RS20330 +0.4 1.9 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS08530 +0.4 2.0 glycine/betaine ABC transporter permease compare
HSERO_RS13790 +0.4 2.3 glycosyl transferase group 1 protein compare
HSERO_RS02945 +0.4 1.4 LysR family transcriptional regulator compare
HSERO_RS02915 +0.4 1.3 short-chain dehydrogenase compare
HSERO_RS11315 +0.4 1.3 histidine kinase compare
HSERO_RS09910 +0.4 0.8 integration host factor subunit alpha compare
HSERO_RS17720 +0.4 2.9 aminopeptidase N compare
HSERO_RS21560 +0.4 1.9 L-asparaginase compare
HSERO_RS18225 +0.4 2.1 pilus assembly protein compare
HSERO_RS06530 +0.4 0.6 muconolactone delta-isomerase compare
HSERO_RS08335 +0.4 1.1 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS07355 +0.4 0.9 hypothetical protein compare
HSERO_RS12140 +0.4 0.8 5-deoxyglucuronate isomerase compare
HSERO_RS08525 +0.4 1.8 hypothetical protein compare
HSERO_RS02345 +0.4 1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HSERO_RS02760 +0.4 0.7 hypothetical protein compare
HSERO_RS05750 +0.4 1.6 hypothetical protein compare
HSERO_RS12105 +0.4 2.1 RpiR family transcriptional regulator compare
HSERO_RS22575 +0.4 1.9 arylesterase compare
HSERO_RS11590 +0.4 1.2 hypothetical protein compare
HSERO_RS14765 +0.4 1.5 membrane protein compare
HSERO_RS11320 +0.4 1.1 hypothetical protein compare
HSERO_RS00160 +0.4 2.0 hypothetical protein compare
HSERO_RS19995 +0.4 0.5 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS10685 +0.4 1.5 serine endopeptidase compare
HSERO_RS17630 +0.4 1.8 hypothetical protein compare
HSERO_RS02800 +0.4 0.7 hypothetical protein compare
HSERO_RS12520 +0.4 2.1 hypothetical protein compare
HSERO_RS13640 +0.4 1.0 hypothetical protein compare
HSERO_RS18790 +0.4 1.5 xylose isomerase compare
HSERO_RS03880 +0.4 0.5 hypothetical protein compare
HSERO_RS07450 +0.4 2.0 LysR family transcriptional regulator compare
HSERO_RS12640 +0.4 1.1 hypothetical protein compare
HSERO_RS10185 +0.4 2.9 flagellar basal body rod protein FlgC compare
HSERO_RS19940 +0.4 1.6 ABC transporter substrate-binding protein compare
HSERO_RS16545 +0.4 2.2 membrane protein compare
HSERO_RS14055 +0.4 1.0 acyl-CoA dehydrogenase compare
HSERO_RS14745 +0.4 0.6 nicotinate phosphoribosyltransferase compare
HSERO_RS10490 +0.4 1.5 gluconate transporter compare
HSERO_RS09240 +0.4 1.7 lipase compare
HSERO_RS12995 +0.4 0.7 DNAase compare
HSERO_RS21620 +0.4 1.6 amino acid ABC transporter permease compare
HSERO_RS00090 +0.4 2.0 hypothetical protein compare
HSERO_RS15350 +0.4 1.2 membrane protein compare
HSERO_RS20925 +0.4 1.6 deoxyguanosinetriphosphate triphosphohydrolase compare
HSERO_RS02790 +0.4 0.9 hypothetical protein compare
HSERO_RS21190 +0.4 2.2 hypothetical protein compare
HSERO_RS08315 +0.4 1.3 cytochrome C compare
HSERO_RS08015 +0.4 1.1 MerR family transcriptional regulator compare
HSERO_RS23835 +0.4 1.9 transporter compare
HSERO_RS08510 +0.4 2.3 phosphodiesterase compare
HSERO_RS02430 +0.4 1.3 sulfurtransferase compare
HSERO_RS02645 +0.4 2.1 MFS transporter compare
HSERO_RS05980 +0.4 0.6 aldehyde dehydrogenase compare
HSERO_RS22010 +0.4 1.5 toxin RelE compare
HSERO_RS01045 +0.4 1.7 bacteriophage baseplate assembly protein W compare
HSERO_RS18295 +0.4 1.8 3'-RNA processing protein compare
HSERO_RS23160 +0.4 1.5 short-chain dehydrogenase compare
HSERO_RS06065 +0.4 1.7 nitrate ABC transporter ATP-binding protein compare
HSERO_RS03145 +0.4 2.7 poly(A) polymerase compare
HSERO_RS06935 +0.4 0.4 RNA-binding protein compare
HSERO_RS18200 +0.4 0.8 RNA-binding protein compare
HSERO_RS18795 +0.3 1.6 shikimate dehydrogenase compare
HSERO_RS01920 +0.3 1.9 50S ribosomal protein L11 methyltransferase compare
HSERO_RS02200 +0.3 2.2 mannitol ABC transporter permease compare
HSERO_RS20180 +0.3 2.2 type VI secretion protein compare
HSERO_RS20370 +0.3 1.9 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in nutrient experiments

For nutrient L-Histidine across organisms