Experiment set4IT045 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
AO356_21125 -3.4 -2.4 cyclic peptide transporter compare
AO356_08930 -2.9 -3.9 heptose kinase compare
AO356_05670 -2.4 -4.2 recombinase RecA compare
AO356_20475 -2.3 -2.0 hypothetical protein compare
AO356_02265 -2.2 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_09810 -2.0 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_11315 -2.0 -2.6 shikimate dehydrogenase compare
AO356_19090 -1.9 -3.0 phosphoribosylaminoimidazole synthetase compare
AO356_02465 -1.9 -2.9 carbonate dehydratase compare
AO356_14505 -1.9 -2.6 peptidase M23 compare
AO356_06385 -1.8 -3.5 recombinase XerD compare
AO356_03405 -1.8 -3.4 serine acetyltransferase compare
AO356_07915 -1.8 -3.1 exodeoxyribonuclease V subunit beta compare
AO356_07480 -1.8 -3.3 carbamoyl phosphate synthase large subunit compare
AO356_06360 -1.8 -3.9 hypothetical protein compare
AO356_01740 -1.8 -4.0 DNA-binding protein compare
AO356_17520 -1.7 -2.0 phosphoribosylformylglycinamidine synthase compare
AO356_09795 -1.7 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO356_07910 -1.6 -1.9 exodeoxyribonuclease V subunit alpha compare
AO356_17890 -1.6 -2.7 H-NS histone compare
AO356_08875 -1.6 -2.5 toluene tolerance protein compare
AO356_13685 -1.6 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_12515 -1.5 -4.7 exodeoxyribonuclease III compare
AO356_12900 -1.5 -3.8 exopolyphosphatase compare
AO356_29160 -1.5 -2.9 (2Fe-2S)-binding protein compare
AO356_28610 -1.5 -2.4 AraC family transcriptional regulator compare
AO356_02460 -1.5 -2.1 hypothetical protein compare
AO356_08585 -1.5 -3.7 50S ribosomal protein L9 compare
AO356_06575 -1.4 -2.6 outer membrane protein assembly factor BamB compare
AO356_12725 -1.4 -4.5 recombinase XerC compare
AO356_12520 -1.4 -2.8 orotate phosphoribosyltransferase compare
AO356_18020 -1.4 -3.1 ATP-dependent DNA helicase RuvA compare
AO356_09800 -1.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_01985 -1.3 -2.6 head completion/stabilization protein compare
AO356_12380 -1.3 -6.1 ATP-dependent DNA helicase RecG compare
AO356_18115 -1.3 -6.2 transporter compare
AO356_22950 -1.2 -1.9 peptidylprolyl isomerase compare
AO356_04560 -1.2 -2.3 serine peptidase compare
AO356_17985 -1.2 -4.8 cold-shock protein compare
AO356_13445 -1.2 -1.6 dihydroorotase compare
AO356_16450 -1.2 -2.5 GTP-binding protein compare
AO356_18025 -1.2 -2.1 ATP-dependent DNA helicase RuvB compare
AO356_05415 -1.2 -3.9 hypothetical protein compare
AO356_01745 -1.1 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_01750 -1.1 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_07540 -1.1 -1.6 SsrA-binding protein compare
AO356_09540 -1.1 -1.7 twin-arginine protein translocation system subunit TatC compare
AO356_07390 -1.1 -1.3 polyribonucleotide nucleotidyltransferase compare
AO356_24845 -1.1 -2.8 ATPase compare
AO356_20830 -1.1 -2.3 phosphoadenosine phosphosulfate reductase compare
AO356_16435 -1.1 -2.2 hypothetical protein compare
AO356_11610 -1.1 -1.7 glycerol acyltransferase compare
AO356_20175 -1.0 -1.3 3-oxoacyl-ACP synthase compare
AO356_27180 -1.0 -3.0 hypothetical protein compare
AO356_21465 -1.0 -3.0 amidophosphoribosyltransferase compare
AO356_08925 -1.0 -4.5 lipopolysaccharide kinase compare
AO356_22795 -1.0 -0.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_05995 -1.0 -1.1 hypothetical protein compare
AO356_07005 -1.0 -1.2 ABC transporter ATP-binding protein compare
AO356_16955 -1.0 -3.9 disulfide bond formation protein B compare
AO356_08910 -1.0 -3.0 carbamoyltransferase compare
AO356_13425 -1.0 -1.7 hypothetical protein compare
AO356_08890 -0.9 -3.4 glycosyltransferase compare
AO356_03800 -0.9 -1.5 histidine kinase compare
AO356_10185 -0.9 -5.3 glutamate--cysteine ligase compare
AO356_25995 -0.9 -2.6 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_27285 -0.9 -3.1 hypothetical protein compare
AO356_14145 -0.9 -3.1 transporter compare
AO356_08905 -0.9 -0.6 glycosyl transferase compare
AO356_09145 -0.9 -3.0 acyl carrier protein compare
AO356_06990 -0.9 -3.3 toluene tolerance protein compare
AO356_21460 -0.9 -1.8 colicin V production CvpA compare
AO356_16170 -0.9 -6.0 acetolactate synthase 3 catalytic subunit compare
AO356_11990 -0.9 -6.0 DNA helicase II compare
AO356_17035 -0.9 -3.3 ATPase compare
AO356_12730 -0.9 -2.5 hypothetical protein compare
AO356_29710 -0.8 -1.9 xylose isomerase compare
AO356_18805 -0.8 -1.2 magnesium transporter compare
AO356_06965 -0.8 -4.5 histidinol dehydrogenase compare
AO356_10170 -0.8 -1.9 chemotaxis protein CheY compare
AO356_22095 -0.8 -3.3 cupin compare
AO356_02305 -0.8 -2.1 hypothetical protein compare
AO356_07110 -0.8 -2.7 ribonuclease G compare
AO356_03010 -0.8 -2.4 glutaredoxin compare
AO356_18855 -0.8 -1.5 hypothetical protein compare
AO356_19420 -0.8 -1.5 septum formation inhibitor compare
AO356_02640 -0.8 -2.0 type III secretion system protein PrgJ compare
AO356_08660 -0.8 -4.3 tRNA dimethylallyltransferase compare
AO356_06890 -0.8 -2.1 cysteine methyltransferase compare
AO356_29590 -0.8 -1.8 ester cyclase compare
AO356_13570 -0.8 -5.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_28125 -0.8 -1.6 hypothetical protein compare
AO356_21515 -0.8 -1.4 antitoxin compare
AO356_17485 -0.8 -3.0 elongation factor 4 compare
AO356_17065 -0.8 -1.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_13395 -0.8 -1.3 non-canonical purine NTP pyrophosphatase compare
AO356_08610 -0.8 -4.0 exoribonuclease R compare
AO356_21320 -0.8 -1.3 tRNA-Asn compare
AO356_06605 -0.8 -1.9 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_25395 -0.8 -1.3 fimbrial assembly protein FimA compare
AO356_03420 -0.8 -3.9 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_14155 -0.7 -4.3 dethiobiotin synthetase compare
AO356_17075 -0.7 -1.6 cytochrome C compare
AO356_13605 -0.7 -4.7 5,10-methylenetetrahydrofolate reductase compare
AO356_14295 -0.7 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_17505 -0.7 -2.9 DNA repair protein RecO compare
AO356_19285 -0.7 -1.0 tRNA-Asp compare
AO356_17345 -0.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
AO356_01275 -0.7 -3.2 GntR family transcriptional regulator compare
AO356_29515 -0.7 -1.5 energy transducer TonB compare
AO356_09815 -0.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
AO356_03350 -0.7 -2.4 glycosyl transferase compare
AO356_30345 -0.7 -2.8 IclR family transcriptional regulator compare
AO356_14150 -0.7 -4.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_17840 -0.7 -2.1 pilus assembly protein PilZ compare
AO356_04205 -0.7 -1.3 hypothetical protein compare
AO356_28845 -0.7 -1.8 ferrichrome ABC transporter compare
AO356_10910 -0.7 -3.8 tryptophan synthase subunit alpha compare
AO356_27965 -0.7 -1.1 benzaldehyde dehydrogenase compare
AO356_03595 -0.7 -1.4 carbon storage regulator compare
AO356_25260 -0.7 -1.2 iron transporter compare
AO356_20885 -0.7 -2.8 metal ABC transporter substrate-binding protein compare
AO356_20905 -0.7 -2.8 hypothetical protein compare
AO356_13695 -0.7 -3.1 hypothetical protein compare
AO356_18960 -0.7 -3.5 hypothetical protein compare
AO356_03360 -0.7 -1.3 hypothetical protein compare
AO356_11025 -0.7 -3.0 transcriptional regulator PhoU compare
AO356_22125 -0.7 -3.0 isocitrate dehydrogenase compare
AO356_00575 -0.7 -1.5 SCP-2 family sterol carrier protein compare
AO356_14140 -0.7 -4.9 8-amino-7-oxononanoate synthase compare
AO356_19320 -0.7 -2.5 hypothetical protein compare
AO356_07600 -0.7 -1.5 hypothetical protein compare
AO356_05540 -0.7 -1.1 cold-shock protein compare
AO356_02495 -0.7 -2.6 recombination protein RecR compare
AO356_18070 -0.7 -3.1 7-cyano-7-deazaguanine synthase compare
AO356_27640 -0.6 -2.2 chemotaxis protein CheB compare
AO356_14135 -0.6 -5.1 biotin synthase compare
AO356_02315 -0.6 -1.8 DNA topoisomerase I compare
AO356_13455 -0.6 -2.2 uracil phosphoribosyltransferase compare
AO356_11465 -0.6 -3.4 DNA polymerase I compare
AO356_03495 -0.6 -1.6 phosphoglycolate phosphatase compare
AO356_11585 -0.6 -1.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_28415 -0.6 -2.5 hypothetical protein compare
AO356_17575 -0.6 -1.7 hypothetical protein compare
AO356_02190 -0.6 -2.8 hypothetical protein compare
AO356_04885 -0.6 -3.3 multidrug transporter compare
AO356_04905 -0.6 -1.9 3-oxoadipate enol-lactonase compare
AO356_20530 -0.6 -1.5 phage tail protein compare
AO356_13655 -0.6 -2.2 hypothetical protein compare
AO356_28105 -0.6 -2.1 LuxR family transcriptional regulator compare
AO356_16070 -0.6 -2.5 poly(A) polymerase compare
AO356_03365 -0.6 -1.5 UDP-N-acetylglucosamine 2-epimerase compare
AO356_15420 -0.6 -2.3 hypothetical protein compare
AO356_16600 -0.6 -1.1 malate:quinone oxidoreductase compare
AO356_16075 -0.6 -1.9 Fis family transcriptional regulator compare
AO356_14790 -0.6 -3.6 MFS transporter compare
AO356_11470 -0.6 -1.8 hypothetical protein compare
AO356_03885 -0.6 -4.0 beta-ketoacyl-ACP synthase compare
AO356_29130 -0.6 -1.6 MFS transporter compare
AO356_29490 -0.6 -1.2 ArsR family transcriptional regulator compare
AO356_14920 -0.6 -1.2 hypothetical protein compare
AO356_28695 -0.6 -1.4 IclR family transcriptional regulator compare
AO356_26195 -0.6 -2.1 TetR family transcriptional regulator compare
AO356_26220 -0.6 -1.1 diguanylate cyclase compare
AO356_26895 -0.5 -1.5 2Fe-2S ferredoxin compare
AO356_25750 -0.5 -1.1 GntR family transcriptional regulator compare
AO356_30000 -0.5 -1.6 hypothetical protein compare
AO356_08315 -0.5 -1.0 hypothetical protein compare
AO356_20940 -0.5 -1.8 hypothetical protein compare
AO356_03725 -0.5 -1.3 histidine kinase compare
AO356_27240 -0.5 -2.7 hypothetical protein compare
AO356_10585 -0.5 -3.9 hypothetical protein compare
AO356_30265 -0.5 -1.5 cupin compare
AO356_04645 -0.5 -2.2 lipid kinase compare
AO356_17950 -0.5 -3.3 histidine kinase compare
AO356_29695 -0.5 -1.5 polysaccharide deacetylase compare
AO356_03415 -0.5 -2.9 oxidoreductase compare
AO356_17020 -0.5 -2.0 cytochrome D ubiquinol oxidase subunit III compare
AO356_03455 -0.5 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO356_12945 -0.5 -1.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_07160 -0.5 -1.1 4-carboxymuconolactone decarboxylase compare
AO356_27550 -0.5 -1.6 3-oxoacyl-ACP synthase compare
AO356_29575 -0.5 -1.7 diguanylate phosphodiesterase compare
AO356_12385 -0.5 -3.6 LysR family transcriptional regulator compare
AO356_05090 -0.5 -1.7 hypothetical protein compare
AO356_08590 -0.5 -2.6 hypothetical protein compare
AO356_04445 -0.5 -1.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_22005 -0.5 -1.4 CopG family transcriptional regulator compare
AO356_07385 -0.5 -0.9 tRNA-Thr compare
AO356_17515 -0.5 -3.6 murein transglycosylase compare
AO356_11420 -0.5 -3.4 histidine kinase compare
AO356_21310 -0.5 -1.3 filamentous hemagglutinin compare
AO356_09080 -0.5 -1.3 thioredoxin compare
AO356_02410 -0.5 -2.5 cytochrome C oxidase Cbb3 compare
AO356_04235 -0.5 -2.3 LysR family transcriptional regulator compare
AO356_21435 -0.5 -2.0 pseudouridine synthase compare
AO356_27210 -0.5 -2.9 hypothetical protein compare
AO356_19210 -0.5 -1.7 hypothetical protein compare
AO356_01940 -0.5 -1.2 hypothetical protein compare
AO356_00420 -0.5 -1.6 3-hydroxybutyrate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in lb experiments