Experiment set4IT044 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -5.5 -14.6 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.3 -15.0 S41 family peptidase compare
PFLU_RS28695 -5.3 -3.6 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.5 -12.2 phosphoserine phosphatase SerB compare
PFLU_RS01900 -4.4 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24125 -4.1 -4.9 cold-shock protein compare
PFLU_RS01605 -4.0 -10.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29885 -3.9 -13.0 LysR family transcriptional regulator compare
PFLU_RS02050 -3.9 -19.0 NAD(P)-binding protein compare
PFLU_RS20690 -3.9 -6.4 hypothetical protein compare
PFLU_RS25760 -3.8 -14.3 glucose-6-phosphate isomerase compare
PFLU_RS12980 -3.8 -9.4 nitrite/sulfite reductase compare
PFLU_RS20575 -3.7 -7.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02365 -3.6 -15.8 glycosyltransferase compare
PFLU_RS01610 -3.6 -13.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS02045 -3.6 -24.0 glutamate synthase large subunit compare
PFLU_RS18505 -3.6 -12.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29875 -3.5 -17.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01620 -3.4 -10.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22595 -3.4 -4.0 OmpA family protein compare
PFLU_RS12975 -3.4 -6.7 DUF934 domain-containing protein compare
PFLU_RS08165 -3.4 -2.3 acyl carrier protein compare
PFLU_RS22740 -3.4 -6.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS00175 -3.3 -9.1 tryptophan synthase subunit alpha compare
PFLU_RS08160 -3.3 -8.4 sugar transferase compare
PFLU_RS09055 -3.1 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS06870 -3.1 -13.4 GNAT family N-acetyltransferase compare
PFLU_RS00180 -3.1 -9.2 tryptophan synthase subunit beta compare
PFLU_RS20540 -3.1 -13.3 phosphoribosylanthranilate isomerase compare
PFLU_RS20580 -3.1 -15.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04470 -3.1 -13.5 histidinol dehydrogenase compare
PFLU_RS29515 -3.1 -13.9 RidA family protein compare
PFLU_RS29880 -3.1 -14.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS23590 -3.1 -3.2 gluconokinase compare
PFLU_RS24330 -3.1 -7.5 phosphogluconate dehydratase compare
PFLU_RS04465 -3.0 -9.5 ATP phosphoribosyltransferase compare
PFLU_RS27365 -3.0 -9.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS23065 -3.0 -11.8 phosphate acyltransferase PlsX compare
PFLU_RS29095 -3.0 -21.9 polyphosphate kinase 1 compare
PFLU_RS14550 -2.9 -10.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS26545 -2.9 -11.8 sel1 repeat family protein compare
PFLU_RS02590 -2.9 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28655 -2.9 -15.0 HAD family hydrolase compare
PFLU_RS28645 -2.9 -15.5 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS25640 -2.9 -13.5 ketol-acid reductoisomerase compare
PFLU_RS27370 -2.9 -13.5 anthranilate phosphoribosyltransferase compare
PFLU_RS01625 -2.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25755 -2.8 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS25750 -2.8 -7.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS24765 -2.7 -18.6 2-isopropylmalate synthase compare
PFLU_RS06055 -2.7 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS20520 -2.7 -11.1 colicin V production protein CvpA compare
PFLU_RS25360 -2.7 -8.4 glutamate 5-kinase compare
PFLU_RS25815 -2.7 -2.4 transcription termination/antitermination protein NusA compare
PFLU_RS03970 -2.7 -10.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS23310 -2.7 -10.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04070 -2.7 -6.4 peptide chain release factor 3 compare
PFLU_RS23725 -2.7 -13.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS24025 -2.7 -12.4 quinolinate synthase NadA compare
PFLU_RS01485 -2.7 -15.5 cellulase compare
PFLU_RS28965 -2.7 -11.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22095 -2.7 -18.5 GTP diphosphokinase compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS22105 -2.5 -6.7 cysteine synthase CysM compare
PFLU_RS20515 -2.5 -4.4 amidophosphoribosyltransferase compare
PFLU_RS25735 -2.5 -9.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS20565 -2.5 -14.6 3-isopropylmalate dehydrogenase compare
PFLU_RS23305 -2.5 -11.2 arginine N-succinyltransferase compare
PFLU_RS23585 -2.4 -9.8 GntP family permease compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS18645 -2.3 -3.3 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS27635 -2.3 -9.1 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS22070 -2.3 -5.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS27645 -2.2 -13.0 8-amino-7-oxononanoate synthase compare
PFLU_RS24205 -2.2 -1.5 DNA binding protein compare
PFLU_RS18530 -2.2 -5.1 DNA translocase FtsK compare
PFLU_RS23920 -2.2 -2.3 septation protein A compare
PFLU_RS28195 -2.2 -13.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS08155 -2.1 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS27650 -2.1 -12.6 biotin synthase BioB compare
PFLU_RS21495 -2.1 -3.8 TlpA family protein disulfide reductase compare
PFLU_RS24485 -2.1 -10.5 hypothetical protein compare
PFLU_RS28535 -2.0 -12.6 dihydroxy-acid dehydratase compare
PFLU_RS07805 -2.0 -14.1 transaldolase compare
PFLU_RS04715 -2.0 -6.0 D-alanine--D-alanine ligase compare
PFLU_RS13540 -2.0 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS30530 -2.0 -7.3 acetyltransferase compare
PFLU_RS19175 -1.9 -8.9 trigger factor compare
PFLU_RS23070 -1.9 -1.9 50S ribosomal protein L32 compare
PFLU_RS07225 -1.9 -12.3 L-aspartate oxidase compare
PFLU_RS01895 -1.9 -5.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03770 -1.9 -11.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13715 -1.9 -2.0 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS18655 -1.9 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS27630 -1.9 -5.7 dethiobiotin synthase compare
PFLU_RS03765 -1.9 -8.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04325 -1.8 -13.0 ribonuclease G compare
PFLU_RS30525 -1.8 -9.2 SDR family oxidoreductase compare
PFLU_RS20870 -1.8 -2.5 hypothetical protein compare
PFLU_RS09980 -1.8 -13.3 peptidase S41 compare
PFLU_RS01910 -1.8 -2.5 sterol-binding protein compare
PFLU_RS30520 -1.8 -5.9 ketoacyl-ACP synthase III compare
PFLU_RS10340 -1.8 -2.3 hypothetical protein compare
PFLU_RS18615 -1.8 -3.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS25225 -1.8 -7.2 disulfide bond formation protein B compare
PFLU_RS25740 -1.8 -5.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24095 -1.8 -2.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS26735 -1.7 -8.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS28690 -1.7 -10.1 FAD-binding oxidoreductase compare
PFLU_RS07785 -1.7 -10.3 VacJ family lipoprotein compare
PFLU_RS09305 -1.7 -11.5 hypothetical protein compare
PFLU_RS31215 -1.7 -2.6 hypothetical protein compare
PFLU_RS24335 -1.7 -10.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS28650 -1.7 -5.9 RNA pyrophosphohydrolase compare
PFLU_RS08505 -1.7 -6.4 protease HtpX compare
PFLU_RS18670 -1.7 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS26770 -1.7 -10.2 DedA family protein compare
PFLU_RS28165 -1.7 -9.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04660 -1.6 -4.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS25920 -1.6 -3.2 outer membrane protein assembly factor BamE compare
PFLU_RS19165 -1.6 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS28385 -1.6 -8.8 homoserine O-acetyltransferase compare
PFLU_RS24085 -1.6 -4.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS13485 -1.6 -10.6 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS13895 -1.6 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS23185 -1.6 -9.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS13750 -1.6 -2.4 hypothetical protein compare
PFLU_RS18665 -1.6 -3.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS06555 -1.6 -7.7 OmpA family protein compare
PFLU_RS16390 -1.6 -2.4 DUF411 domain-containing protein compare
PFLU_RS20510 -1.5 -9.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18635 -1.5 -3.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS08665 -1.5 -1.0 cytochrome c maturation protein CcmE compare
PFLU_RS15410 -1.5 -2.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS02455 -1.5 -2.5 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS13240 -1.5 -6.5 D-glycerate dehydrogenase compare
PFLU_RS30165 -1.4 -7.0 ParA family protein compare
PFLU_RS07065 -1.4 -4.1 hypothetical protein compare
PFLU_RS30645 -1.4 -2.1 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS24255 -1.4 -7.6 pyruvate kinase compare
PFLU_RS29550 -1.4 -7.1 ATP-dependent DNA helicase RecG compare
PFLU_RS04650 -1.4 -10.1 ABC transporter substrate-binding protein compare
PFLU_RS22600 -1.4 -1.6 RNA polymerase sigma factor SigX compare
PFLU_RS27640 -1.4 -1.7 alpha/beta fold hydrolase compare
PFLU_RS08180 -1.4 -3.6 ketoacyl-ACP synthase III compare
PFLU_RS21645 -1.4 -7.0 chemotaxis protein CheA compare
PFLU_RS16445 -1.4 -3.3 PIG-L family deacetylase compare
PFLU_RS25730 -1.4 -9.8 PAS domain S-box protein compare
PFLU_RS18675 -1.4 -2.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS28390 -1.3 -6.4 methionine biosynthesis protein MetW compare
PFLU_RS06865 -1.3 -5.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS08185 -1.3 -5.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS27620 -1.3 -10.0 acyl-CoA dehydrogenase compare
PFLU_RS04440 -1.3 -7.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS24090 -1.3 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS07650 -1.3 -8.0 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS27440 -1.3 -5.8 nucleotidyltransferase family protein compare
PFLU_RS03075 -1.3 -1.5 translation initiation factor Sui1 compare
PFLU_RS29890 -1.3 -5.6 transcriptional regulator HexR compare
PFLU_RS24560 -1.3 -6.2 site-specific tyrosine recombinase XerD compare
PFLU_RS04195 -1.2 -2.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS02460 -1.2 -8.4 alpha/beta fold hydrolase compare
PFLU_RS06320 -1.2 -2.1 OmpH family outer membrane protein compare
PFLU_RS02180 -1.2 -1.4 thioredoxin TrxC compare
PFLU_RS30790 -1.2 -2.1 hypothetical protein compare
PFLU_RS18885 -1.2 -1.9 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS21655 -1.2 -4.5 response regulator compare
PFLU_RS05885 -1.2 -4.2 recombinase RecA compare
PFLU_RS29900 -1.2 -6.9 DNA helicase II compare
PFLU_RS18625 -1.2 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS29490 -1.2 -6.2 ribonuclease PH compare
PFLU_RS19170 -1.2 -3.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS14805 -1.2 -1.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS04430 -1.2 -5.8 ATP-binding cassette domain-containing protein compare
PFLU_RS25715 -1.2 -6.8 RNA polymerase-binding protein DksA compare
PFLU_RS31100 -1.2 -3.3 preprotein translocase subunit SecG compare
PFLU_RS11505 -1.2 -1.9 ABC transporter substrate-binding protein compare
PFLU_RS26905 -1.1 -6.2 transcriptional regulator NrdR compare
PFLU_RS29275 -1.1 -3.5 DUF484 family protein compare
PFLU_RS25585 -1.1 -1.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18725 -1.1 -1.0 alpha/beta hydrolase compare
PFLU_RS04220 -1.1 -4.9 FadR family transcriptional regulator compare
PFLU_RS21300 -1.1 -4.3 cysteine hydrolase compare
PFLU_RS28320 -1.1 -2.0 glutathione synthase compare
PFLU_RS02000 -1.1 -9.8 penicillin-binding protein 1A compare
PFLU_RS23380 -1.1 -1.0 HAD-IB family hydrolase compare
PFLU_RS15310 -1.1 -2.4 YgdI/YgdR family lipoprotein compare
PFLU_RS29280 -1.1 -4.4 tyrosine recombinase XerC compare
PFLU_RS17580 -1.1 -1.6 repressor LexA compare
PFLU_RS26640 -1.1 -6.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS14820 -1.1 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS18700 -1.1 -1.4 hypothetical protein compare
PFLU_RS04445 -1.1 -4.6 ABC transporter substrate-binding protein compare
PFLU_RS10405 -1.1 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS25645 -1.1 -1.3 acetolactate synthase small subunit compare
PFLU_RS18640 -1.0 -3.0 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS27380 -1.0 -6.0 anthranilate synthase component I compare
PFLU_RS13765 -1.0 -1.9 hypothetical protein compare
PFLU_RS04435 -1.0 -4.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS02970 -1.0 -4.3 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For pH D-Glucose in Pseudomonas fluorescens SBW25-INTG

For pH D-Glucose across organisms