Experiment set4IT043 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -8.9 -1.9 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -8.7 -6.1 2-isopropylmalate synthase compare
MMP_RS03450 -8.3 -1.8 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -7.4 -3.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07345 -6.8 -4.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS09020 -6.6 -1.4 hypothetical protein compare
MMP_RS04615 -6.5 -3.0 PDGLE domain-containing protein compare
MMP_RS01545 -6.2 -0.8 CBS domain-containing protein compare
MMP_RS06270 -6.1 -5.7 TIGR00300 family protein compare
MMP_RS06355 -6.0 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS04620 -6.0 -11.5 cobalt transporter CbiM compare
MMP_RS03435 -5.9 -1.5 ketol-acid reductoisomerase compare
MMP_RS01020 -5.9 -0.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02240 -5.8 -3.4 methanogenesis marker 7 protein compare
MMP_RS05930 -5.8 -2.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS03400 -5.7 -2.5 archease compare
MMP_RS07630 -5.6 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS06730 -5.5 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS07730 -5.5 -1.5 pyruvate synthase subunit beta compare
MMP_RS03315 -5.4 -1.2 ferrous iron transport protein A compare
MMP_RS06625 -5.4 -1.8 DNA primase compare
MMP_RS06400 -5.3 -1.6 4Fe-4S binding protein compare
MMP_RS02135 -5.3 -4.4 DUF5612 domain-containing protein compare
MMP_RS08715 -5.2 -1.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04215 -5.2 -7.0 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01455 -5.0 -5.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03600 -5.0 -1.9 triose-phosphate isomerase compare
MMP_RS04685 -5.0 -3.0 DUF126 domain-containing protein compare
MMP_RS01800 -4.9 -4.0 TIGR00303 family protein compare
MMP_RS06375 -4.9 -4.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07555 -4.8 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS07185 -4.8 -9.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05265 -4.8 -2.0 2-isopropylmalate synthase compare
MMP_RS03035 -4.8 -3.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08370 -4.7 -0.6 cation:proton antiporter subunit C compare
MMP_RS08635 -4.7 -1.4 UbiA family prenyltransferase compare
MMP_RS00300 -4.6 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS04775 -4.6 -3.3 adenosylhomocysteinase compare
MMP_RS04605 -4.6 -3.0 cobalt ECF transporter T component CbiQ compare
MMP_RS07005 -4.6 -0.6 4Fe-4S binding protein compare
MMP_RS03445 -4.6 -0.8 methanogenesis marker 17 protein compare
MMP_RS03475 -4.5 -0.6 hypothetical protein compare
MMP_RS01385 -4.5 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07380 -4.4 -2.1 transcription elongation factor Spt5 compare
MMP_RS03700 -4.4 -10.3 sodium:proton antiporter compare
MMP_RS07645 -4.4 -5.7 aldehyde dehydrogenase family protein compare
MMP_RS04500 -4.4 -17.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06285 -4.4 -2.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01005 -4.4 -1.1 riboflavin synthase compare
MMP_RS05100 -4.4 -18.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05090 -4.4 -10.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07600 -4.3 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06885 -4.3 -2.5 50S ribosome-binding GTPase compare
MMP_RS02195 -4.3 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05085 -4.2 -11.3 AAA family ATPase compare
MMP_RS06350 -4.2 -6.1 HesA/MoeB/ThiF family protein compare
MMP_RS05515 -4.2 -6.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06370 -4.2 -4.2 biotin synthase BioB compare
MMP_RS02280 -4.1 -0.7 DUF211 domain-containing protein compare
MMP_RS06230 -4.1 -2.2 helix-turn-helix domain-containing protein compare
MMP_RS05075 -4.1 -16.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS01700 -4.1 -0.7 dihydroxy-acid dehydratase compare
MMP_RS05060 -4.1 -12.3 AAA family ATPase compare
MMP_RS03015 -4.1 -9.7 GTP 3' 8-cyclase MoaA compare
MMP_RS05425 -4.1 -4.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01500 -4.1 -1.9 CBS domain-containing protein compare
MMP_RS06895 -4.0 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS02175 -4.0 -0.7 DUF1611 domain-containing protein compare
MMP_RS08650 -4.0 -3.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07635 -4.0 -6.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05815 -3.9 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05080 -3.9 -16.0 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS07955 -3.9 -6.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00110 -3.9 -2.8 hypothetical protein compare
MMP_RS00515 -3.9 -0.7 DUF655 domain-containing protein compare
MMP_RS00305 -3.9 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS08745 -3.9 -5.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06295 -3.9 -7.3 methanogenesis marker 14 protein compare
MMP_RS00750 -3.8 -2.2 fumarate hydratase compare
MMP_RS05095 -3.8 -8.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06925 -3.7 -2.4 ribonuclease VapC4 compare
MMP_RS01225 -3.7 -4.8 DUF5379 domain-containing protein compare
MMP_RS05070 -3.6 -8.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS08105 -3.6 -6.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS05065 -3.6 -4.5 CooT family nickel-binding protein compare
MMP_RS08095 -3.6 -6.2 dethiobiotin synthase compare
MMP_RS03025 -3.6 -5.8 molybdenum cofactor guanylyltransferase compare
MMP_RS03390 -3.5 -7.0 malate dehydrogenase compare
MMP_RS01795 -3.5 -1.4 methanogenesis marker 6 protein compare
MMP_RS06630 -3.5 -0.9 UPF0058 family protein compare
MMP_RS02010 -3.5 -8.1 PHP domain-containing protein compare
MMP_RS07735 -3.5 -0.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08100 -3.4 -6.6 8-amino-7-oxononanoate synthase compare
MMP_RS08720 -3.4 -1.4 4Fe-4S binding protein compare
MMP_RS07200 -3.4 -6.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05055 -3.4 -14.7 DUF166 domain-containing protein compare
MMP_RS08210 -3.3 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS03140 -3.3 -12.8 hypothetical protein compare
MMP_RS07390 -3.3 -2.0 cell division protein FtsZ compare
MMP_RS02875 -3.3 -9.5 chorismate pyruvate-lyase family protein compare
MMP_RS05550 -3.2 -0.6 cation:proton antiporter compare
MMP_RS08435 -3.2 -1.7 Era-like GTP-binding protein compare
MMP_RS07575 -3.2 -3.3 RNA ligase partner protein compare
MMP_RS04790 -3.2 -9.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03960 -3.1 -0.8 hypothetical protein compare
MMP_RS06120 -3.1 -1.7 UPF0147 family protein compare
MMP_RS03145 -3.1 -7.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07750 -3.1 -4.4 DUF357 domain-containing protein compare
MMP_RS08440 -3.1 -2.3 cell division protein SepF compare
MMP_RS03640 -3.0 -3.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05925 -3.0 -3.5 small nuclear ribonucleoprotein compare
MMP_RS06340 -3.0 -8.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05250 -3.0 -1.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01265 -3.0 -1.6 hypothetical protein compare
MMP_RS08330 -2.9 -4.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS07195 -2.9 -8.5 M20 family metallo-hydrolase compare
MMP_RS02900 -2.9 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08350 -2.9 -0.9 hypothetical protein compare
MMP_RS01610 -2.9 -2.8 hypothetical protein compare
MMP_RS02145 -2.9 -6.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS01865 -2.8 -1.4 GPR1/FUN34/YaaH family transporter compare
MMP_RS00130 -2.8 -1.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS03580 -2.8 -2.5 signal recognition particle-docking protein FtsY compare
MMP_RS07365 -2.8 -9.5 2-phosphoglycerate kinase compare
MMP_RS08240 -2.8 -6.0 methanogenesis marker 16 metalloprotein compare
MMP_RS04710 -2.8 -1.2 hypothetical protein compare
MMP_RS01325 -2.8 -1.7 dihydroneopterin aldolase family protein compare
MMP_RS06475 -2.7 -3.3 FAD-dependent oxidoreductase compare
MMP_RS07755 -2.7 -0.9 DUF555 domain-containing protein compare
MMP_RS01905 -2.7 -11.6 glycosyltransferase compare
MMP_RS02355 -2.7 -2.6 30S ribosomal protein S27ae compare
MMP_RS06725 -2.7 -8.6 hypothetical protein compare
MMP_RS07545 -2.7 -0.8 HTH domain-containing protein compare
MMP_RS04780 -2.6 -2.3 ribonuclease P compare
MMP_RS03420 -2.6 -3.2 acetolactate synthase small subunit compare
MMP_RS08460 -2.6 -2.1 proteasome-activating nucleotidase compare
MMP_RS08595 -2.6 -0.9 flagellar protein C compare
MMP_RS06020 -2.6 -3.4 archaeoflavoprotein AfpA compare
MMP_RS00685 -2.6 -3.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01900 -2.5 -9.8 hypothetical protein compare
MMP_RS01725 -2.5 -3.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS05845 -2.5 -1.5 tRNA-intron lyase compare
MMP_RS06315 -2.5 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01925 -2.5 -6.3 DUF1616 domain-containing protein compare
MMP_RS06105 -2.5 -7.1 hydrogenase maturation peptidase HycI compare
MMP_RS01380 -2.5 -4.4 PHP domain-containing protein compare
MMP_RS00735 -2.5 -3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS08645 -2.4 -6.4 UPF0179 family protein compare
MMP_RS04890 -2.4 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08790 -2.4 -1.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS07615 -2.4 -5.5 energy-coupling factor ABC transporter permease compare
MMP_RS07875 -2.4 -4.7 hypothetical protein compare
MMP_RS01910 -2.3 -8.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS00520 -2.3 -1.3 RNA polymerase Rpb4 family protein compare
MMP_RS07580 -2.3 -2.3 DUF356 domain-containing protein compare
MMP_RS08820 -2.3 -3.6 hypothetical protein compare
MMP_RS07710 -2.3 -6.9 cell division protein FtsZ compare
MMP_RS03095 -2.3 -5.8 diphthine synthase compare
MMP_RS01890 -2.3 -3.2 nucleotide sugar dehydrogenase compare
MMP_RS01220 -2.3 -7.1 hypothetical protein compare
MMP_RS07075 -2.3 -3.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS08165 -2.2 -2.1 phosphoglycerate dehydrogenase compare
MMP_RS07620 -2.2 -3.7 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS05555 -2.2 -1.1 DUF4040 domain-containing protein compare
MMP_RS00945 -2.2 -1.0 PadR family transcriptional regulator compare
MMP_RS00315 -2.2 -5.7 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07540 -2.1 -3.2 CBS domain-containing protein compare
MMP_RS02340 -2.1 -1.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07625 -2.1 -3.2 cobalt ECF transporter T component CbiQ compare
MMP_RS06980 -2.1 -6.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07525 -2.1 -6.1 4Fe-4S binding protein compare
MMP_RS01915 -2.1 -10.3 DUF354 domain-containing protein compare
MMP_RS02885 -2.1 -11.4 molybdopterin biosynthesis protein compare
MMP_RS01895 -2.0 -9.6 flippase compare
MMP_RS08725 -2.0 -1.7 Ni/Fe hydrogenase subunit alpha compare
MMP_RS04585 -2.0 -7.0 AIR synthase related protein compare
MMP_RS04850 -2.0 -10.8 UPF0254 family protein compare
MMP_RS06670 -2.0 -4.1 glucose-6-phosphate isomerase compare
MMP_RS07820 -2.0 -3.7 UPF0104 family protein compare
MMP_RS01880 -1.9 -5.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01955 -1.9 -1.8 hypothetical protein compare
MMP_RS03250 -1.9 -2.5 MJ1244 family protein compare
MMP_RS02345 -1.9 -2.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00900 -1.9 -1.6 50S ribosomal protein L39e compare
MMP_RS02800 -1.9 -4.1 nucleotidyltransferase domain-containing protein compare
MMP_RS03110 -1.9 -4.0 glycosyltransferase family 2 protein compare
MMP_RS00810 -1.9 -5.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01875 -1.9 -7.5 N-acetyltransferase compare
MMP_RS07605 -1.9 -1.9 diadenylate cyclase compare
MMP_RS06130 -1.8 -2.6 peptidylprolyl isomerase compare
MMP_RS02235 -1.8 -6.6 CBS domain-containing protein compare
MMP_RS00985 -1.8 -4.5 CDC48 family AAA ATPase compare
MMP_RS01830 -1.8 -1.3 tRNA-Val compare
MMP_RS01975 -1.8 -10.2 hypothetical protein compare
MMP_RS01540 -1.8 -2.2 DUF504 domain-containing protein compare
MMP_RS06940 -1.8 -1.6 polyprenyl diphosphate synthase compare
MMP_RS06700 -1.8 -7.4 hypothetical protein compare
MMP_RS05640 -1.7 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05875 -1.7 -2.7 hydroxyethylthiazole kinase compare
MMP_RS01840 -1.7 -6.3 TIGR00289 family protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient t2 Mc_vitamins in Methanococcus maripaludis S2

For nutrient t2 Mc_vitamins across organisms