Experiment set4IT043 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS03620 +3.2 18.9 hypothetical protein compare
MMP_RS03615 +3.1 20.3 4Fe-4S binding protein compare
MMP_RS04550 +2.3 16.6 S-layer protein compare
MMP_RS01310 +1.5 8.3 hypothetical protein compare
MMP_RS01290 +1.5 8.0 class III signal peptide-containing protein compare
MMP_RS08860 +1.5 4.1 MinD/ParA family protein compare
MMP_RS00240 +1.4 9.0 type II secretion system F family protein compare
MMP_RS07890 +1.4 2.7 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08855 +1.3 5.5 hypothetical protein compare
MMP_RS01295 +1.3 6.5 hypothetical protein compare
MMP_RS02490 +1.3 2.8 hypothetical protein compare
MMP_RS07125 +1.3 4.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00245 +1.3 9.2 type II secretion system F family protein compare
MMP_RS04145 +1.2 1.9 hypothetical protein compare
MMP_RS01305 +1.2 7.8 hypothetical protein compare
MMP_RS01285 +1.2 5.0 hypothetical protein compare
MMP_RS01315 +1.2 9.0 DUF2341 domain-containing protein compare
MMP_RS07860 +1.1 0.7 hypothetical protein compare
MMP_RS01280 +1.1 7.1 DUF515 domain-containing protein compare
MMP_RS03125 +1.1 3.1 cell division ATPase MinD compare
MMP_RS00250 +1.1 7.5 Flp pilus assembly complex ATPase component TadA compare
MMP_RS06070 +1.1 5.6 iron ABC transporter substrate-binding protein compare
MMP_RS08775 +1.1 4.2 methanogenesis marker 9 domain-containing protein compare
MMP_RS02605 +1.1 0.8 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS07815 +1.0 1.2 DUF2120 domain-containing protein compare
MMP_RS08665 +1.0 6.8 hypothetical protein compare
MMP_RS03520 +1.0 2.0 YwbE family protein compare
MMP_RS08675 +1.0 2.0 class III signal peptide-containing protein compare
MMP_RS08940 +1.0 1.1 MetS family NSS transporter small subunit compare
MMP_RS03090 +1.0 3.7 cation:proton antiporter compare
MMP_RS09045 +1.0 6.2 class III signal peptide-containing protein compare
MMP_RS01750 +1.0 5.2 DUF63 family protein compare
MMP_RS05910 +1.0 1.5 cell division ATPase MinD compare
MMP_RS01370 +0.9 4.1 acetate--CoA ligase family protein compare
MMP_RS08400 +0.9 2.1 MJ0307 family thioredoxin compare
MMP_RS08275 +0.9 4.6 hypothetical protein compare
MMP_RS01270 +0.9 4.4 prepilin peptidase compare
MMP_RS06745 +0.9 2.8 DUF2119 domain-containing protein compare
MMP_RS03220 +0.9 1.8 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS00395 +0.9 1.2 MGMT family protein compare
MMP_RS07130 +0.9 4.9 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS07770 +0.9 3.2 alanine racemase compare
MMP_RS02675 +0.9 1.5 hypothetical protein compare
MMP_RS00675 +0.9 0.8 nitroreductase family protein compare
MMP_RS07885 +0.9 2.1 tripartite tricarboxylate transporter permease compare
MMP_RS05635 +0.9 4.6 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS06175 +0.8 3.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS00990 +0.8 1.9 hypothetical protein compare
MMP_RS07560 +0.8 2.2 prefoldin subunit alpha compare
MMP_RS02915 +0.8 3.2 amino acid ABC transporter permease compare
MMP_RS07330 +0.8 5.7 membrane protein compare
MMP_RS08130 +0.8 3.8 IGHMBP2 family helicase compare
MMP_RS03385 +0.8 0.7 cation diffusion facilitator family transporter compare
MMP_RS05965 +0.8 2.5 carboxymuconolactone decarboxylase family protein compare
MMP_RS04035 +0.8 1.8 hypothetical protein compare
MMP_RS08385 +0.8 2.3 ABC transporter substrate-binding protein compare
MMP_RS08670 +0.8 2.1 metallophosphoesterase compare
MMP_RS04060 +0.8 4.2 hypothetical protein compare
MMP_RS06715 +0.7 3.9 cache domain-containing protein compare
MMP_RS03965 +0.7 1.5 hypothetical protein compare
MMP_RS08930 +0.7 1.2 hypothetical protein compare
MMP_RS08620 +0.7 3.5 flagellar accessory protein FlaH compare
MMP_RS06520 +0.7 2.6 DUF1786 domain-containing protein compare
MMP_RS02470 +0.7 0.6 helix-turn-helix transcriptional regulator compare
MMP_RS02450 +0.7 2.4 hypothetical protein compare
MMP_RS08475 +0.7 2.9 ABC transporter permease compare
MMP_RS06765 +0.7 1.9 flap endonuclease-1 compare
MMP_RS07910 +0.7 1.7 NAD(P)H-hydrate dehydratase compare
MMP_RS06910 +0.7 2.6 RlmF-related methyltransferase compare
MMP_RS03670 +0.7 1.3 DUF1890 domain-containing protein compare
MMP_RS06140 +0.7 1.2 radical SAM protein compare
MMP_RS09055 +0.7 0.5 CAP domain-containing protein compare
MMP_RS05720 +0.7 1.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS00235 +0.7 2.9 HDIG domain-containing protein compare
MMP_RS01130 +0.7 3.2 flavoprotein compare
MMP_RS06500 +0.7 2.3 ATP-binding protein compare
MMP_RS05785 +0.7 4.2 ATP-binding protein compare
MMP_RS05325 +0.7 3.2 hypothetical protein compare
MMP_RS00335 +0.6 1.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS03440 +0.6 0.6 MoaD/ThiS family protein compare
MMP_RS03625 +0.6 2.2 cell wall-binding protein compare
MMP_RS06840 +0.6 0.5 DNA-directed RNA polymerase subunit N compare
MMP_RS08260 +0.6 2.3 DUF99 family protein compare
MMP_RS06915 +0.6 1.3 metallophosphoesterase compare
MMP_RS02595 +0.6 0.7 putative zinc-binding protein compare
MMP_RS06760 +0.6 1.2 hypothetical protein compare
MMP_RS03840 +0.6 1.9 hypothetical protein compare
MMP_RS01300 +0.6 3.5 hypothetical protein compare
MMP_RS01620 +0.6 1.5 hypothetical protein compare
MMP_RS08285 +0.6 2.1 serine/threonine protein kinase compare
MMP_RS01055 +0.6 1.4 hypothetical protein compare
MMP_RS06540 +0.6 1.0 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08200 +0.6 3.1 archaeosine synthase subunit alpha compare
MMP_RS00570 +0.6 1.5 protein-L-isoaspartate O-methyltransferase compare
MMP_RS02370 +0.6 1.5 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS01125 +0.6 2.2 thioredoxin family protein compare
MMP_RS01460 +0.6 1.3 hypothetical protein compare
MMP_RS07960 +0.6 1.8 sugar phosphate isomerase/epimerase compare
MMP_RS02405 +0.6 1.2 hypothetical protein compare
MMP_RS05035 +0.6 2.2 hypothetical protein compare
MMP_RS07835 +0.5 1.8 TldD/PmbA family protein compare
MMP_RS03540 +0.5 2.0 DUF2178 domain-containing protein compare
MMP_RS00960 +0.5 1.4 iron export ABC transporter permease subunit FetB compare
MMP_RS07900 +0.5 1.1 YeeE/YedE family protein compare
MMP_RS03120 +0.5 1.6 hypothetical protein compare
MMP_RS02815 +0.5 1.1 hypothetical protein compare
MMP_RS05825 +0.5 1.6 peptidyl-prolyl cis-trans isomerase compare
MMP_RS06990 +0.5 1.6 CatB-related O-acetyltransferase compare
MMP_RS08640 +0.5 2.2 TIM barrel protein compare
MMP_RS08555 +0.5 0.9 hypothetical protein compare
MMP_RS06335 +0.5 1.5 HAD family hydrolase compare
MMP_RS07840 +0.5 1.2 ribonuclease III compare
MMP_RS08075 +0.5 1.1 DUF749 domain-containing protein compare
MMP_RS02985 +0.5 0.9 hypothetical protein compare
MMP_RS05905 +0.5 1.8 undecaprenyl-diphosphate phosphatase compare
MMP_RS06720 +0.5 2.1 response regulator transcription factor compare
MMP_RS08850 +0.5 3.3 hypothetical protein compare
MMP_RS00660 +0.5 2.4 alkaline phosphatase family protein compare
MMP_RS04610 +0.5 1.4 Dabb family protein compare
MMP_RS08975 +0.5 1.7 hypothetical protein compare
MMP_RS08580 +0.5 2.0 flagellin compare
MMP_RS05660 +0.5 1.5 phosphate ABC transporter substrate-binding protein compare
MMP_RS04520 +0.5 1.2 nucleoside deaminase compare
MMP_RS02440 +0.5 1.7 hypothetical protein compare
MMP_RS08615 +0.5 0.7 flagellar protein G compare
MMP_RS05695 +0.5 1.9 phospholipase D-like domain-containing protein compare
MMP_RS05835 +0.5 0.3 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS08750 +0.5 1.0 hypothetical protein compare
MMP_RS08250 +0.5 2.2 pyruvate kinase compare
MMP_RS06920 +0.5 2.2 AAA family ATPase compare
MMP_RS02390 +0.5 1.6 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS04475 +0.5 1.6 nitrogen fixation compare
MMP_RS01275 +0.5 1.7 class III signal peptide-containing protein compare
MMP_RS09050 +0.5 1.0 CAP domain-containing protein compare
MMP_RS01120 +0.5 1.9 permease compare
MMP_RS07550 +0.5 2.5 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS07925 +0.5 1.0 haloacid dehalogenase compare
MMP_RS05865 +0.5 1.3 hypothetical protein compare
MMP_RS04020 +0.5 1.6 hypothetical protein compare
MMP_RS06365 +0.5 0.9 hypothetical protein compare
MMP_RS07120 +0.5 1.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS01080 +0.5 1.2 DUF2202 domain-containing protein compare
MMP_RS06935 +0.5 1.5 protease complex subunit PrcB family protein compare
MMP_RS07905 +0.5 1.2 DUF3343 domain-containing protein compare
MMP_RS03675 +0.4 2.0 RimK family alpha-L-glutamate ligase compare
MMP_RS08700 +0.4 1.8 hypothetical protein compare
MMP_RS03235 +0.4 1.0 tRNA pseudouridine(13) synthase TruD compare
MMP_RS01870 +0.4 2.1 acyl-CoA dehydratase activase compare
MMP_RS05685 +0.4 1.3 winged helix-turn-helix domain-containing protein compare
MMP_RS09030 +0.4 1.5 hypothetical protein compare
MMP_RS06075 +0.4 1.9 class I SAM-dependent methyltransferase compare
MMP_RS02545 +0.4 1.2 hypothetical protein compare
MMP_RS03340 +0.4 0.3 ABC transporter ATP-binding protein compare
MMP_RS08085 +0.4 2.0 hypothetical protein compare
MMP_RS06440 +0.4 1.4 CBS domain-containing protein compare
MMP_RS00185 +0.4 2.4 potassium channel protein compare
MMP_RS01320 +0.4 0.6 hypothetical protein compare
MMP_RS08625 +0.4 2.0 type II/IV secretion system ATPase subunit compare
MMP_RS00090 +0.4 1.6 CoA-binding protein compare
MMP_RS03740 +0.4 1.6 indolepyruvate oxidoreductase subunit beta compare
MMP_RS00280 +0.4 1.9 DUF2118 domain-containing protein compare
MMP_RS01085 +0.4 0.6 hypothetical protein compare
MMP_RS01660 +0.4 1.0 hypothetical protein compare
MMP_RS05235 +0.4 1.5 exodeoxyribonuclease III compare
MMP_RS03590 +0.4 1.3 METTL5 family protein compare
MMP_RS02540 +0.4 1.1 DUF2283 domain-containing protein compare
MMP_RS07570 +0.4 1.5 nucleotidyltransferase family protein compare
MMP_RS04580 +0.4 2.2 hypothetical protein compare
MMP_RS00325 +0.4 0.5 RNA-binding protein compare
MMP_RS08610 +0.4 1.8 flagellar protein F compare
MMP_RS00140 +0.4 1.0 DUF192 domain-containing protein compare
MMP_RS08770 +0.4 1.3 hypothetical protein compare
MMP_RS01835 +0.4 1.8 hypothetical protein compare
MMP_RS03100 +0.4 0.9 hypothetical protein compare
MMP_RS08080 +0.4 1.5 YchF/TatD family DNA exonuclease compare
MMP_RS00950 +0.4 1.5 site-2 protease family protein compare
MMP_RS09065 +0.4 2.0 hypothetical protein compare
MMP_RS01515 +0.4 1.9 PINc/VapC family ATPase compare
MMP_RS02300 +0.4 1.2 NAD(P)H-dependent oxidoreductase compare
MMP_RS02965 +0.4 1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS08265 +0.4 0.9 rubrerythrin compare
MMP_RS02290 +0.4 1.1 MBL fold metallo-hydrolase compare
MMP_RS07590 +0.4 1.6 hypothetical protein compare
MMP_RS06555 +0.4 0.8 cupin domain-containing protein compare
MMP_RS05355 +0.4 0.2 hypothetical protein compare
MMP_RS05985 +0.4 0.9 hypothetical protein compare
MMP_RS01185 +0.3 1.3 hypothetical protein compare
MMP_RS01210 +0.3 1.4 sodium:solute symporter compare
MMP_RS02455 +0.3 1.1 hypothetical protein compare
MMP_RS05615 +0.3 1.9 radical SAM protein compare
MMP_RS05820 +0.3 1.7 RNA-binding transcriptional accessory protein compare
MMP_RS07765 +0.3 1.2 sodium:alanine symporter family protein compare
MMP_RS00710 +0.3 0.5 hypothetical protein compare
MMP_RS04835 +0.3 1.4 chemotaxis protein CheC compare
MMP_RS06000 +0.3 0.9 divalent-cation tolerance protein CutA compare
MMP_RS02430 +0.3 2.0 hypothetical protein compare
MMP_RS01650 +0.3 0.3 sulfurtransferase TusA family protein compare
MMP_RS06225 +0.3 1.1 DNA double-strand break repair nuclease NurA compare
MMP_RS02305 +0.3 1.7 DUF378 domain-containing protein compare
MMP_RS08090 +0.3 0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient t2 Mc_vitamins in Methanococcus maripaludis S2

For nutrient t2 Mc_vitamins across organisms