Experiment set4IT043 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Benzalkonium Chloride 0.0005 mg/ml

200 most important genes:

  gene name fitness t score description  
Ga0059261_3518 -3.8 -18.3 RND family efflux transporter, MFP subunit compare
Ga0059261_3519 -3.8 -22.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_3520 -3.6 -14.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_0170 -3.2 -6.3 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_0349 -3.0 -6.3 MarR family compare
Ga0059261_1369 -2.8 -13.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3637 -2.8 -4.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2490 -2.7 -7.9 Small protein A (tmRNA-binding) compare
Ga0059261_4188 -2.5 -8.7 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_1911 -2.4 -3.3 Thioredoxin-like proteins and domains compare
Ga0059261_0171 -2.4 -2.4 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3615 -2.4 -2.4 hypothetical protein compare
Ga0059261_2391 -2.3 -3.1 Helix-turn-helix domain compare
Ga0059261_4186 -2.3 -3.0 Phosphopantetheine attachment site compare
Ga0059261_2005 -2.3 -6.3 protoheme IX farnesyltransferase compare
Ga0059261_0172 -2.3 -9.6 Cytochrome c biogenesis factor compare
Ga0059261_1560 -2.2 -3.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1287 -2.2 -10.7 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_0175 -2.1 -9.0 heme exporter protein CcmC compare
Ga0059261_3502 -2.1 -4.2 Fatty acid desaturase compare
Ga0059261_1909 -2.0 -8.9 MAF protein compare
Ga0059261_1370 -2.0 -9.8 Signal transduction histidine kinase compare
Ga0059261_1293 -1.9 -10.8 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_0163 -1.9 -3.7 Major Facilitator Superfamily compare
Ga0059261_1451 -1.8 -4.8 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_1696 -1.8 -5.5 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1870 -1.8 -6.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_1564 -1.8 -4.8 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_2514 -1.8 -11.2 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_4187 -1.7 -10.3 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_3211 -1.7 -8.3 hypothetical protein compare
Ga0059261_2501 -1.7 -8.3 C-terminal peptidase (prc) compare
Ga0059261_2444 -1.6 -6.1 5-aminolevulinic acid synthase compare
Ga0059261_1871 -1.6 -10.5 ABC transport permease subunit compare
Ga0059261_2189 -1.6 -7.1 uncharacterized domain 1 compare
Ga0059261_1929 -1.6 -5.5 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_2190 -1.5 -2.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_2417 -1.5 -4.1 phytoene desaturase compare
Ga0059261_3208 -1.5 -2.1 hypothetical protein compare
Ga0059261_0790 -1.4 -2.3 putative membrane protein insertion efficiency factor compare
Ga0059261_0037 -1.4 -9.4 hypothetical protein compare
Ga0059261_0013 -1.4 -4.1 hypothetical protein compare
Ga0059261_0918 -1.4 -4.6 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_0211 -1.3 -6.2 Uncharacterized protein conserved in bacteria conserved
Ga0059261_0197 -1.3 -1.9 hypothetical protein compare
Ga0059261_1605 -1.3 -6.7 transcriptional regulator, TetR family compare
Ga0059261_0664 -1.3 -2.3 pseudouridine synthase, RluA family compare
Ga0059261_1928 -1.3 -4.1 Predicted permeases compare
Ga0059261_1868 -1.3 -2.2 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_1869 -1.3 -5.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_0321 -1.3 -2.5 hypothetical protein compare
Ga0059261_2418 -1.2 -4.8 lycopene cyclase compare
Ga0059261_1417 -1.2 -3.6 transcriptional regulator, XRE family compare
Ga0059261_2291 -1.2 -5.8 putative efflux protein, MATE family conserved
Ga0059261_0354 -1.2 -3.3 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_3695 -1.2 -7.8 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_2181 -1.1 -8.4 penicillin-binding protein, 1A family compare
Ga0059261_2540 -1.1 -2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0613 -1.1 -3.5 FecR family protein compare
Ga0059261_1565 -1.1 -8.2 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_0931 -1.1 -2.6 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_4012 -1.1 -2.3 AMP nucleosidase compare
Ga0059261_1382 -1.0 -6.1 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_1368 -1.0 -3.0 hypothetical protein compare
Ga0059261_0131 -1.0 -4.9 hypothetical protein compare
Ga0059261_2119 -1.0 -4.1 Flagellar motor protein compare
Ga0059261_3160 -1.0 -2.9 TolQ protein compare
Ga0059261_1601 -1.0 -2.5 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_0239 -1.0 -1.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_2191 -1.0 -4.9 ribosomal subunit interface protein compare
Ga0059261_3488 -1.0 -1.8 Histidine kinase/HAMP domain compare
Ga0059261_3671 -1.0 -1.6 Citrate lyase beta subunit compare
Ga0059261_2179 -1.0 -5.5 Phospholipid N-methyltransferase compare
Ga0059261_0038 -0.9 -3.5 Transcriptional regulators compare
Ga0059261_1566 -0.9 -5.8 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_1846 -0.9 -5.8 Xaa-Pro aminopeptidase compare
Ga0059261_2013 -0.9 -7.1 signal peptidase I, bacterial type compare
Ga0059261_0227 -0.9 -2.6 hypothetical protein compare
Ga0059261_1561 -0.9 -4.0 Signal transduction histidine kinase compare
Ga0059261_2243 -0.9 -2.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1563 -0.9 -1.8 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_1312 -0.9 -3.5 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_2222 -0.9 -5.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_3866 -0.9 -6.1 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
Ga0059261_2295 -0.8 -2.9 DUF218 domain compare
Ga0059261_4055 -0.8 -5.9 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_2498 -0.8 -2.6 hypothetical protein compare
Ga0059261_2286 -0.8 -3.9 Fe2+ transport system protein B compare
Ga0059261_4056 -0.8 -5.9 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_3153 -0.8 -2.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2700 -0.8 -6.3 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_1562 -0.8 -3.9 Uncharacterized conserved protein compare
Ga0059261_2215 -0.8 -2.2 Thiamine monophosphate synthase compare
Ga0059261_2314 -0.8 -2.8 Protein-disulfide isomerase compare
Ga0059261_3657 -0.8 -4.6 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_3191 -0.7 -3.8 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_0204 -0.7 -3.0 protein RecA compare
Ga0059261_1676 -0.7 -5.2 transcriptional regulator, IclR family compare
Ga0059261_4120 -0.7 -1.2 Stress responsive A/B Barrel Domain compare
Ga0059261_3159 -0.7 -2.8 TolR protein compare
Ga0059261_1050 -0.7 -0.7 hypothetical protein compare
Ga0059261_0255 -0.7 -1.6 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_3100 -0.7 -5.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_4212 -0.7 -3.0 TPR repeat compare
Ga0059261_1707 -0.7 -1.8 hypothetical protein compare
Ga0059261_3200 -0.7 -6.0 Opacity protein and related surface antigens compare
Ga0059261_2118 -0.7 -3.9 flagellar motor stator protein MotA compare
Ga0059261_3119 -0.7 -2.7 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_1008 -0.7 -3.1 Geranylgeranyl pyrophosphate synthase compare
Ga0059261_2125 -0.7 -3.6 ATP-dependent helicase HrpB compare
Ga0059261_1472 -0.7 -1.1 hypothetical protein compare
Ga0059261_2109 -0.7 -2.2 hypothetical protein compare
Ga0059261_1507 -0.7 -2.1 deoxycytidine triphosphate deaminase compare
Ga0059261_1837 -0.7 -1.4 Staphylococcal nuclease homologue compare
Ga0059261_0350 -0.7 -3.6 Bacterial SH3 domain compare
Ga0059261_2285 -0.7 -1.2 Fe2+ transport system protein A compare
Ga0059261_3506 -0.6 -1.2 Predicted permeases compare
Ga0059261_0964 -0.6 -2.2 Superfamily II DNA and RNA helicases compare
Ga0059261_2132 -0.6 -2.0 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_3748 -0.6 -1.8 ribosomal protein L15, bacterial/organelle compare
Ga0059261_0656 -0.6 -2.1 Predicted dehydrogenases and related proteins compare
Ga0059261_1260 -0.6 -4.6 cobaltochelatase CobT subunit (EC 6.6.1.2) compare
Ga0059261_3101 -0.6 -2.1 nucleotide sugar dehydrogenase compare
Ga0059261_3347 -0.6 -2.3 Domain of unknown function DUF87 compare
Ga0059261_0361 -0.6 -4.7 conserved hypothetical protein, YceG family compare
Ga0059261_3276 -0.6 -3.8 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_3255 -0.6 -4.3 hypothetical protein compare
Ga0059261_4025 -0.6 -1.3 Nucleotidyl transferase compare
Ga0059261_1545 -0.6 -2.8 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_3284 -0.6 -4.3 acetyl-CoA acetyltransferases compare
Ga0059261_0390 -0.6 -0.6 Ribbon-helix-helix protein, copG family compare
Ga0059261_0248 -0.6 -2.1 hypothetical protein compare
Ga0059261_3157 -0.6 -4.6 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_3016 -0.6 -1.3 hypothetical protein compare
Ga0059261_0146 -0.6 -2.0 amidohydrolase, PncC family compare
Ga0059261_2420 -0.6 -2.0 transcriptional regulator, TetR family compare
Ga0059261_2481 -0.6 -2.3 Ppx/GppA phosphatase family compare
Ga0059261_2513 -0.5 -3.1 Domain of unknown function (DUF4115)/Helix-turn-helix domain compare
Ga0059261_2416 -0.5 -2.8 TIGR00730 family protein compare
Ga0059261_2528 -0.5 -2.2 Uncharacterized conserved protein compare
Ga0059261_2267 -0.5 -4.4 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_1262 -0.5 -4.5 cobaltochelatase CobS subunit (EC 6.6.1.2) compare
Ga0059261_0012 -0.5 -2.6 Protein of unknown function (DUF1469) compare
Ga0059261_1010 -0.5 -4.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_0136 -0.5 -1.8 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_1547 -0.5 -3.7 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_1860 -0.5 -0.8 Transposase compare
Ga0059261_3494 -0.5 -4.6 Glutamine synthetase adenylyltransferase compare
Ga0059261_3481 -0.5 -2.5 Beta-glucosidase-related glycosidases compare
Ga0059261_3865 -0.5 -3.5 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
Ga0059261_3103 -0.5 -2.1 Glycosyltransferase compare
Ga0059261_2034 -0.5 -3.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2612 -0.5 -2.1 Uncharacterized secreted protein compare
Ga0059261_1360 -0.5 -3.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_0650 -0.5 -0.9 Negative regulator of beta-lactamase expression compare
Ga0059261_3097 -0.5 -2.5 Calcineurin-like phosphoesterase compare
Ga0059261_2128 -0.5 -2.1 Predicted membrane protein compare
Ga0059261_0438 -0.5 -1.6 hypothetical protein compare
Ga0059261_0121 -0.5 -1.2 Sporulation related domain compare
Ga0059261_3285 -0.5 -1.8 Acyl dehydratase compare
Ga0059261_3440 -0.5 -1.0 hypothetical protein compare
Ga0059261_3339 -0.5 -2.8 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_1419 -0.5 -2.3 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_1830 -0.5 -1.0 hypothetical protein compare
Ga0059261_2213 -0.5 -2.6 Domain of unknown function (DUF3576) compare
Ga0059261_3196 -0.5 -1.2 Transcriptional regulator compare
Ga0059261_0245 -0.5 -0.8 pseudouridine synthase compare
Ga0059261_2188 -0.5 -1.5 Uncharacterized conserved protein compare
Ga0059261_3786 -0.5 -2.7 Malic enzyme compare
Ga0059261_2129 -0.5 -2.4 Beta-propeller domains of methanol dehydrogenase type compare
Ga0059261_3632 -0.5 -2.0 Predicted transcriptional regulators compare
Ga0059261_1453 -0.5 -3.0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs compare
Ga0059261_2050 -0.5 -1.9 hypothetical protein compare
Ga0059261_4169 -0.5 -1.9 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_3190 -0.5 -3.8 3-isopropylmalate dehydrogenase compare
Ga0059261_2071 -0.4 -2.0 flagellar motor switch protein FliG compare
Ga0059261_4053 -0.4 -1.7 hypothetical protein compare
Ga0059261_2021 -0.4 -3.5 Protein of unknown function (DUF2029) compare
Ga0059261_0807 -0.4 -1.6 RNA methyltransferase, RsmE family compare
Ga0059261_2121 -0.4 -3.3 hypothetical protein compare
Ga0059261_1948 -0.4 -3.1 Glucose-6-phosphate isomerase compare
Ga0059261_1762 -0.4 -0.8 hypothetical protein compare
Ga0059261_2324 -0.4 -2.1 integration host factor, alpha subunit compare
Ga0059261_0439 -0.4 -1.7 hypothetical protein compare
Ga0059261_0039 -0.4 -2.6 His Kinase A (phospho-acceptor) domain compare
Ga0059261_3371 -0.4 -1.2 hypothetical protein compare
Ga0059261_2415 -0.4 -3.4 Phytoene/squalene synthetase compare
Ga0059261_1411 -0.4 -3.7 Opacity protein and related surface antigens compare
Ga0059261_3979 -0.4 -1.6 elongation factor 4 compare
Ga0059261_0880 -0.4 -2.9 Tetratricopeptide repeat compare
Ga0059261_2120 -0.4 -1.4 hypothetical protein compare
Ga0059261_3624 -0.4 -1.6 hypothetical protein compare
Ga0059261_2116 -0.4 -3.4 Integrase compare
Ga0059261_3959 -0.4 -1.7 MerC mercury resistance protein compare
Ga0059261_3026 -0.4 -1.0 Cation efflux family compare
Ga0059261_1573 -0.4 -2.2 hypothetical protein compare
Ga0059261_2707 -0.4 -2.7 fructose-1,6-bisphosphatase, class II compare
Ga0059261_3685 -0.4 -2.6 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3948 -0.4 -1.3 type II secretion system protein H compare
Ga0059261_2117 -0.4 -3.2 Transposase and inactivated derivatives compare


Specific Phenotypes

For 2 genes in this experiment

For stress Benzalkonium Chloride in Sphingomonas koreensis DSMZ 15582

For stress Benzalkonium Chloride across organisms