Experiment set4IT043 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Benzalkonium Chloride 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_4204 +1.0 5.4 transcriptional regulator, TetR family compare
Ga0059261_1872 +0.9 5.5 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_1795 +0.8 4.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_1035 +0.7 1.5 hypothetical protein compare
Ga0059261_1351 +0.7 5.7 signal peptide peptidase SppA, 67K type compare
Ga0059261_1381 +0.7 4.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0817 +0.7 4.0 GTP-binding protein TypA/BipA compare
Ga0059261_4122 +0.6 1.9 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_3491 +0.6 3.6 hypothetical protein compare
Ga0059261_0448 +0.6 1.2 hypothetical protein compare
Ga0059261_0898 +0.6 2.4 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_3620 +0.6 2.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_3569 +0.6 1.3 chaperone protein DnaJ compare
Ga0059261_0827 +0.6 2.1 hypothetical protein compare
Ga0059261_2102 +0.5 2.6 hypothetical protein compare
Ga0059261_2892 +0.5 2.5 hypothetical protein compare
Ga0059261_0612 +0.5 2.1 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3280 +0.5 1.5 Uncharacterized conserved protein compare
Ga0059261_0084 +0.5 1.8 hypothetical protein compare
Ga0059261_0059 +0.5 1.3 Stress-induced morphogen (activity unknown) compare
Ga0059261_1596 +0.5 1.8 CBS domain compare
Ga0059261_3752 +0.5 2.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_2234 +0.5 3.2 Glycerol-3-phosphate dehydrogenase compare
Ga0059261_4192 +0.5 1.8 ATPases involved in chromosome partitioning compare
Ga0059261_1015 +0.5 2.9 Predicted phosphatases compare
Ga0059261_2706 +0.5 3.1 CAAX protease self-immunity compare
Ga0059261_0344 +0.5 2.0 Molecular chaperone (small heat shock protein) compare
Ga0059261_2347 +0.4 1.2 hypothetical protein compare
Ga0059261_0433 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_0973 +0.4 2.2 hypothetical protein compare
Ga0059261_3635 +0.4 2.2 Predicted integral membrane protein compare
Ga0059261_2713 +0.4 1.4 hypothetical protein compare
Ga0059261_1380 +0.4 3.2 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2897 +0.4 1.6 hypothetical protein compare
Ga0059261_3708 +0.4 2.1 GAF domain-containing protein compare
Ga0059261_2251 +0.4 2.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3566 +0.4 1.3 hypothetical protein compare
Ga0059261_1303 +0.4 2.2 hypothetical protein compare
Ga0059261_0024 +0.4 2.3 Predicted membrane protein compare
Ga0059261_3937 +0.4 2.9 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_1014 +0.4 1.8 cation diffusion facilitator family transporter compare
Ga0059261_0062 +0.4 1.8 hypothetical protein compare
Ga0059261_0137 +0.4 1.8 nitrogen regulation protein NR(I) compare
Ga0059261_0102 +0.3 2.8 endopeptidase La compare
Ga0059261_4143 +0.3 1.8 hypothetical protein compare
Ga0059261_3168 +0.3 1.9 peroxiredoxin, OsmC subfamily compare
Ga0059261_1087 +0.3 1.9 hypothetical protein compare
Ga0059261_2978 +0.3 1.7 Transcriptional regulators compare
Ga0059261_2587 +0.3 1.9 hypothetical protein compare
Ga0059261_3872 +0.3 1.4 Outer membrane protein compare
Ga0059261_2685 +0.3 2.4 Putative translation initiation inhibitor, yjgF family compare
Ga0059261_0072 +0.3 1.7 ATPases involved in chromosome partitioning compare
Ga0059261_1122 +0.3 1.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_1318 +0.3 1.4 Uncharacterized MobA-related protein compare
Ga0059261_3647 +0.3 2.1 hypothetical protein compare
Ga0059261_1531 +0.3 1.7 hypothetical protein compare
Ga0059261_3710 +0.3 2.5 Peptidase family M28 compare
Ga0059261_0906 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_1335 +0.3 1.6 Predicted ATPase compare
Ga0059261_2640 +0.3 1.7 Asp/Glu/Hydantoin racemase compare
Ga0059261_3356 +0.3 0.6 hypothetical protein compare
Ga0059261_2949 +0.3 1.8 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_0796 +0.3 0.8 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_3909 +0.3 1.3 Predicted membrane protein compare
Ga0059261_1286 +0.3 1.7 phasin family protein compare
Ga0059261_0993 +0.3 0.6 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_3407 +0.3 2.4 Superfamily II DNA and RNA helicases compare
Ga0059261_0773 +0.3 1.1 Esterase/lipase compare
Ga0059261_2663 +0.3 0.7 Domain of unknown function (DUF718) compare
Ga0059261_1169 +0.3 1.4 hypothetical protein compare
Ga0059261_3545 +0.3 1.0 hypothetical protein compare
Ga0059261_2774 +0.3 0.7 Transcription elongation factor compare
Ga0059261_3659 +0.3 1.1 PqqD family protein, HPr-rel-A system compare
Ga0059261_0586 +0.3 1.3 hypothetical protein compare
Ga0059261_3835 +0.3 1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Ga0059261_2186 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2948 +0.3 1.5 Putative copper export protein compare
Ga0059261_2436 +0.3 1.2 hypothetical protein compare
Ga0059261_0493 +0.3 0.6 hypothetical protein compare
Ga0059261_3874 +0.3 1.7 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_3498 +0.3 1.3 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_2548 +0.3 0.8 tRNA compare
Ga0059261_2368 +0.3 0.8 Phage baseplate assembly protein W compare
Ga0059261_3507 +0.3 2.4 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_3650 +0.3 1.3 hypothetical protein compare
Ga0059261_1016 +0.3 1.1 Cupin domain compare
Ga0059261_1600 +0.3 0.9 Domain of unknown function (DUF4167) compare
Ga0059261_3925 +0.3 1.5 Transcriptional regulators compare
Ga0059261_2349 +0.3 1.3 hypothetical protein compare
Ga0059261_2493 +0.3 2.1 hypothetical protein compare
Ga0059261_2491 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_0459 +0.3 1.5 Heavy-metal resistance compare
Ga0059261_2126 +0.3 1.6 ETC complex I subunit conserved region compare
Ga0059261_1064 +0.3 1.1 Uncharacterized conserved protein compare
Ga0059261_1608 +0.3 2.1 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Ga0059261_0889 +0.3 0.8 Cold shock proteins compare
Ga0059261_2731 +0.3 1.6 transcriptional regulator, AraC family compare
Ga0059261_0930 +0.3 1.6 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ga0059261_1146 +0.3 1.4 Flagellar basal body L-ring protein compare
Ga0059261_1396 +0.3 1.1 EF-hand domain pair compare
Ga0059261_1448 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0816 +0.3 1.1 hypothetical protein compare
Ga0059261_0095 +0.3 1.4 Ribosomal protein L7/L12 C-terminal domain compare
Ga0059261_2271 +0.3 1.8 branched-chain alpha-keto acid dehydrogenase E2 component (EC 2.3.1.168) compare
Ga0059261_3891 +0.3 1.5 SapC compare
Ga0059261_0056 +0.3 1.5 Predicted transcriptional regulator compare
Ga0059261_0294 +0.3 1.1 arsenate reductase (glutaredoxin) compare
Ga0059261_3365 +0.3 1.2 hypothetical protein compare
Ga0059261_2818 +0.3 1.7 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2029 +0.2 1.5 diguanylate cyclase (GGDEF) domain compare
Ga0059261_2232 +0.2 1.4 Uncharacterized conserved protein compare
Ga0059261_1839 +0.2 1.3 hypothetical protein compare
Ga0059261_1004 +0.2 2.2 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Ga0059261_1862 +0.2 1.2 Transposase compare
Ga0059261_0734 +0.2 1.9 RNA compare
Ga0059261_2683 +0.2 1.5 Protein of unknown function (DUF3572) compare
Ga0059261_0733 +0.2 1.3 Cell division protein ZapA compare
Ga0059261_2272 +0.2 2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Ga0059261_4146 +0.2 1.8 phage shock protein B compare
Ga0059261_1985 +0.2 0.6 transcriptional regulator NrdR compare
Ga0059261_3064 +0.2 0.8 hypothetical protein compare
Ga0059261_0420 +0.2 1.4 FecR family protein compare
Ga0059261_3896 +0.2 1.0 integration host factor, beta subunit compare
Ga0059261_3161 +0.2 1.6 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_3838 +0.2 1.4 Hemerythrin HHE cation binding domain compare
Ga0059261_0893 +0.2 1.1 inosine-5'-monophosphate dehydrogenase compare
Ga0059261_1339 +0.2 0.6 hypothetical protein compare
Ga0059261_0403 +0.2 1.3 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_3971 +0.2 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2987 +0.2 0.6 hypothetical protein compare
Ga0059261_2076 +0.2 0.6 hypothetical protein compare
Ga0059261_1315 +0.2 0.9 Alpha/beta hydrolase family compare
Ga0059261_4002 +0.2 1.6 Esterase/lipase compare
Ga0059261_1119 +0.2 0.8 Chemotaxis signal transduction protein compare
Ga0059261_3451 +0.2 0.6 hypothetical protein compare
Ga0059261_0985 +0.2 1.1 hypothetical protein compare
Ga0059261_2255 +0.2 0.7 nitrogen regulatory protein P-II family compare
Ga0059261_0549 +0.2 1.5 Domain of Unknown Function (DUF1080) compare
Ga0059261_1826 +0.2 1.2 Domain of unknown function (DUF1905) compare
Ga0059261_3164 +0.2 1.4 Protein of unknown function (DUF3297) compare
Ga0059261_2973 +0.2 1.3 hypothetical protein compare
Ga0059261_2441 +0.2 1.6 Uncharacterized conserved protein compare
Ga0059261_1713 +0.2 1.5 hypothetical protein compare
Ga0059261_0651 +0.2 1.4 Methylase of chemotaxis methyl-accepting proteins compare
Ga0059261_0834 +0.2 1.0 hypothetical protein compare
Ga0059261_3762 +0.2 1.1 Uncharacterized conserved protein compare
Ga0059261_3372 +0.2 1.7 Di- and tricarboxylate transporters compare
Ga0059261_4001 +0.2 1.5 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_3025 +0.2 1.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_0200 +0.2 1.3 Xaa-Pro aminopeptidase compare
Ga0059261_2203 +0.2 1.6 hypothetical protein compare
Ga0059261_3800 +0.2 1.2 Cold shock proteins compare
Ga0059261_3345 +0.2 0.6 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_1181 +0.2 0.9 hypothetical protein compare
Ga0059261_3526 +0.2 1.6 hemimethylated DNA binding domain compare
Ga0059261_2277 +0.2 0.6 hypothetical protein compare
Ga0059261_1163 +0.2 1.0 Copper chaperone compare
Ga0059261_3939 +0.2 1.3 transcriptional regulator, TetR family compare
Ga0059261_0143 +0.2 1.3 hypothetical protein compare
Ga0059261_0998 +0.2 1.4 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Ga0059261_2578 +0.2 1.5 Protein of unknown function (DUF2840) compare
Ga0059261_3332 +0.2 1.4 Predicted membrane protein compare
Ga0059261_2230 +0.2 1.7 Uncharacterized conserved protein compare
Ga0059261_2273 +0.2 1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Ga0059261_4171 +0.2 1.0 redox-sensitive transcriptional activator SoxR compare
Ga0059261_0794 +0.2 1.4 hypothetical protein compare
Ga0059261_0742 +0.2 1.3 Uncharacterized small membrane protein compare
Ga0059261_3513 +0.2 1.7 Outer membrane protein V compare
Ga0059261_2449 +0.2 1.4 Hemerythrin HHE cation binding domain compare
Ga0059261_2570 +0.2 0.7 Type IV secretory pathway, TrbD component compare
Ga0059261_3132 +0.2 1.3 hypothetical protein compare
Ga0059261_0410 +0.2 1.6 Antirestriction protein compare
Ga0059261_1610 +0.2 1.2 CBS domain/Transporter associated domain compare
Ga0059261_0220 +0.2 1.4 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_1521 +0.2 1.3 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3884 +0.2 0.8 K+-transporting ATPase, B subunit compare
Ga0059261_2206 +0.2 1.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
Ga0059261_1786 +0.2 1.2 hypothetical protein compare
Ga0059261_0671 +0.2 1.0 Uncharacterized conserved protein compare
Ga0059261_2091 +0.2 1.0 Flagellar hook capping protein compare
Ga0059261_1569 +0.2 0.6 Response regulator receiver domain compare
Ga0059261_1970 +0.2 1.3 Bacterial aa3 type cytochrome c oxidase subunit IV compare
Ga0059261_3756 +0.2 1.5 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_2466 +0.2 1.6 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_3854 +0.2 1.8 dimethylhistidine N-methyltransferase compare
Ga0059261_4119 +0.2 1.4 Uracil-DNA glycosylase (EC 3.2.2.-) compare
Ga0059261_1500 +0.2 0.9 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_2363 +0.2 1.4 Phage P2 GpU compare
Ga0059261_3128 +0.2 1.7 capsular exopolysaccharide family compare
Ga0059261_0722 +0.2 1.3 L-aminopeptidase/D-esterase compare
Ga0059261_0832 +0.2 1.7 Predicted permease compare
Ga0059261_0267 +0.2 0.6 Predicted membrane protein compare
Ga0059261_1847 +0.2 1.0 hypothetical protein compare
Ga0059261_3706 +0.2 0.8 RF-1 domain compare
Ga0059261_1729 +0.2 1.2 Surface presentation of antigens (SPOA) compare
Ga0059261_2065 +0.2 0.9 Flagellar motor switch protein compare
Ga0059261_0757 +0.2 0.4 Predicted transcriptional regulators compare
Ga0059261_0035 +0.2 0.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_3496 +0.2 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_2253 +0.2 1.5 Arylamine N-acetyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Benzalkonium Chloride in Sphingomonas koreensis DSMZ 15582

For stress Benzalkonium Chloride across organisms