Experiment set4IT042 for Ralstonia solanacearum IBSBF1503

Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

Group: xylem sap
Media: + Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Culturing: RalstoniaBSBF1503_ML2, in planta, at 28 (C)
By: Stratton Georgoulis on 16-Dec-20

Specific Phenotypes

For 4 genes in this experiment

For xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct in Ralstonia solanacearum IBSBF1503

For xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct across organisms

SEED Subsystems

Subsystem	#Specific
Cobalamin synthesis	3
Coenzyme B12 biosynthesis	3
Experimental tye	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Porphyrin and chlorophyll metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)	15	13	6
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)	13	11	4
siroheme biosynthesis	4	3	1
adenosylcobalamin biosynthesis I (anaerobic)	36	29	7
adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide	6	6	1
adenosylcobalamin biosynthesis II (aerobic)	33	29	5
factor 430 biosynthesis	7	3	1