Experiment set4IT042 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with (R)-2-Hydroxybutyrate 10 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.3 11.1 acetyltransferase compare
BBR_RS18745 +1.0 1.4 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19640 +1.0 1.5 phosphoesterase compare
BBR_RS16845 +1.0 2.7 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS20910 +0.9 1.9 DUF1829 domain-containing protein compare
BBR_RS16555 +0.9 0.9 DNA translocase FtsK compare
BBR_RS16080 +0.8 3.2 DUF1287 domain-containing protein compare
BBR_RS14715 +0.8 2.6 XRE family transcriptional regulator compare
BBR_RS13125 +0.8 1.4 ABC transporter permease compare
BBR_RS20930 +0.8 3.0 hypothetical protein compare
BBR_RS10740 +0.8 2.4 tRNA-Gly compare
BBR_RS19070 +0.8 0.6 50S ribosomal protein L33 compare
BBR_RS13830 +0.5 0.9 DUF4191 domain-containing protein compare
BBR_RS11640 +0.5 1.6 hypothetical protein compare
BBR_RS20760 +0.5 2.0 hypothetical protein compare
BBR_RS15845 +0.5 0.4 hypothetical protein compare
BBR_RS13305 +0.5 1.9 transcriptional repressor compare
BBR_RS18635 +0.5 2.4 PspC domain-containing protein compare
BBR_RS14970 +0.5 1.3 transcriptional regulator compare
BBR_RS15555 +0.4 1.7 HAD family hydrolase compare
BBR_RS15495 +0.4 2.1 ABC transporter ATP-binding protein compare
BBR_RS15930 +0.4 1.9 RNA polymerase sigma factor compare
BBR_RS16445 +0.4 1.9 hypothetical protein compare
BBR_RS14660 +0.4 1.3 transcriptional regulator compare
BBR_RS12515 +0.4 3.2 LacI family transcriptional regulator compare
BBR_RS18645 +0.4 3.2 DNA-binding response regulator compare
BBR_RS16295 +0.4 1.7 DNA methyltransferase compare
BBR_RS20705 +0.4 0.9 hypothetical protein compare
BBR_RS20830 +0.4 1.3 hypothetical protein compare
BBR_RS12620 +0.4 3.3 glycosyltransferase family 1 protein compare
BBR_RS20680 +0.4 2.3 hypothetical protein compare
BBR_RS14980 +0.4 1.6 xanthine phosphoribosyltransferase compare
BBR_RS19370 +0.4 1.5 type I polyketide synthase compare
BBR_RS21060 +0.4 2.0 hypothetical protein compare
BBR_RS17155 +0.4 0.6 cell division protein SepF compare
BBR_RS20170 +0.4 3.5 LacI family transcriptional regulator compare
BBR_RS17685 +0.4 0.9 hypothetical protein compare
BBR_RS11205 +0.4 2.3 HPr family phosphocarrier protein compare
BBR_RS12775 +0.4 1.7 hypothetical protein compare
BBR_RS14220 +0.4 2.5 phosphomannomutase compare
BBR_RS16885 +0.4 2.6 carbohydrate kinase compare
BBR_RS13935 +0.4 1.7 hypothetical protein compare
BBR_RS12550 +0.4 3.0 sugar transferase compare
BBR_RS15570 +0.4 1.7 branched-chain amino acid transport system II carrier protein compare
BBR_RS18495 +0.4 2.3 ROK family protein compare
BBR_RS19055 +0.4 0.9 ferredoxin family protein compare
BBR_RS20330 +0.3 2.7 PTS sugar transporter subunit IIA compare
BBR_RS19800 +0.3 3.0 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS19265 +0.3 2.3 pyrrolidone-carboxylate peptidase compare
BBR_RS10285 +0.3 0.6 membrane protein compare
BBR_RS12340 +0.3 1.6 Arc family DNA-binding protein compare
BBR_RS11500 +0.3 2.8 glycosyltransferase family 2 protein compare
BBR_RS20730 +0.3 1.7 Crp/Fnr family transcriptional regulator compare
BBR_RS14010 +0.3 1.8 TlyA family rRNA (cytidine-2'-O)-methyltransferase compare
BBR_RS20835 +0.3 1.6 hypothetical protein compare
BBR_RS13715 +0.3 1.4 DUF3107 domain-containing protein compare
BBR_RS13705 +0.3 1.8 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS17475 +0.3 1.7 cold-shock protein compare
BBR_RS17905 +0.3 3.2 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS20320 +0.3 3.0 PTS ascorbate transporter subunit IIC compare
BBR_RS15360 +0.3 1.0 hypothetical protein compare
BBR_RS20750 +0.3 1.2 GntR family transcriptional regulator compare
BBR_RS13905 +0.3 1.7 ornithine carbamoyltransferase compare
BBR_RS20815 +0.3 1.4 potassium transporter Trk compare
BBR_RS17415 +0.3 1.0 hypothetical protein compare
BBR_RS13215 +0.3 0.6 hypothetical protein compare
BBR_RS13175 +0.3 1.8 deoxyguanosinetriphosphate triphosphohydrolase compare
BBR_RS16275 +0.3 0.6 leucine--tRNA ligase compare
BBR_RS15920 +0.3 0.8 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS10890 +0.3 2.5 LacI family transcriptional regulator compare
BBR_RS20960 +0.3 0.4 hypothetical protein compare
BBR_RS16835 +0.3 1.5 cell wall biosynthesis-associated protein compare
BBR_RS18800 +0.3 1.3 50S ribosomal protein L17 compare
BBR_RS16570 +0.3 2.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
BBR_RS17150 +0.3 1.7 YggT family protein compare
BBR_RS12030 +0.3 0.7 F0F1 ATP synthase subunit epsilon compare
BBR_RS14835 +0.3 1.6 sulfite exporter TauE/SafE family protein compare
BBR_RS18625 +0.3 2.5 alpha/beta hydrolase compare
BBR_RS13335 +0.3 1.6 transcriptional repressor compare
BBR_RS19240 +0.3 2.5 LacI family transcriptional regulator compare
BBR_RS16895 +0.3 2.0 MFS transporter compare
BBR_RS12770 +0.3 1.3 hypothetical protein compare
BBR_RS14720 +0.3 1.8 MFS transporter compare
BBR_RS10920 +0.3 1.2 hypothetical protein compare
BBR_RS14930 +0.3 1.7 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS13425 +0.3 1.6 hypothetical protein compare
BBR_RS10805 +0.3 2.3 LacI family transcriptional regulator compare
BBR_RS13840 +0.3 1.3 DUF3043 domain-containing protein compare
BBR_RS20175 +0.3 2.5 LacI family transcriptional regulator compare
BBR_RS19345 +0.3 1.0 tRNA-Val compare
BBR_RS16575 +0.3 1.5 (p)ppGpp synthetase compare
BBR_RS16855 +0.3 1.3 NUDIX domain-containing protein compare
BBR_RS11635 +0.3 1.7 hypothetical protein compare
BBR_RS17190 +0.3 1.6 transcriptional regulator compare
BBR_RS11145 +0.3 0.9 hypothetical protein compare
BBR_RS19030 +0.3 2.4 LacI family transcriptional regulator compare
BBR_RS14590 +0.3 1.5 pyridoxine kinase compare
BBR_RS20660 +0.3 1.5 hypothetical protein compare
BBR_RS10980 +0.3 2.2 TetR/AcrR family transcriptional regulator compare
BBR_RS13235 +0.3 1.5 hypothetical protein compare
BBR_RS16330 +0.3 1.9 LacI family transcriptional regulator compare
BBR_RS19440 +0.3 2.4 polysaccharide deacetylase family protein compare
BBR_RS17895 +0.3 1.7 TetR/AcrR family transcriptional regulator compare
BBR_RS10765 +0.3 2.3 hypothetical protein compare
BBR_RS20905 +0.3 1.1 hypothetical protein compare
BBR_RS11520 +0.3 2.1 P-II family nitrogen regulator compare
BBR_RS21145 +0.3 1.6 ISL3 family transposase compare
BBR_RS15325 +0.3 0.8 hypothetical protein compare
BBR_RS13400 +0.3 1.1 DNA-deoxyinosine glycosylase compare
BBR_RS20085 +0.3 1.8 histidine phosphatase family protein compare
BBR_RS14425 +0.3 1.7 histidine phosphatase family protein compare
BBR_RS14470 +0.2 1.0 hypothetical protein compare
BBR_RS16630 +0.2 1.3 exodeoxyribonuclease III compare
BBR_RS10770 +0.2 1.7 CrcB family protein compare
BBR_RS16685 +0.2 0.7 alcohol dehydrogenase compare
BBR_RS13455 +0.2 0.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13850 +0.2 1.0 ABC transporter permease compare
BBR_RS13545 +0.2 1.1 DUF4143 domain-containing protein compare
BBR_RS17660 +0.2 0.7 hypothetical protein compare
BBR_RS15905 +0.2 1.5 ABC transporter ATP-binding protein compare
BBR_RS14600 +0.2 1.6 ABC transporter ATP-binding protein compare
BBR_RS13680 +0.2 1.6 SPFH domain-containing protein compare
BBR_RS20325 +0.2 1.6 PTS lactose transporter subunit IIB compare
BBR_RS14015 +0.2 0.9 hypothetical protein compare
BBR_RS14450 +0.2 1.7 methionine ABC transporter ATP-binding protein compare
BBR_RS14160 +0.2 1.0 peptidylprolyl isomerase compare
BBR_RS15595 +0.2 1.3 fructosamine kinase compare
BBR_RS15745 +0.2 1.0 hydrolase or phosphatase compare
BBR_RS14545 +0.2 1.2 TIGR00730 family Rossman fold protein compare
BBR_RS14535 +0.2 1.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS13390 +0.2 1.3 hypothetical protein compare
BBR_RS15955 +0.2 1.0 hypothetical protein compare
BBR_RS21070 +0.2 1.2 DNA-binding protein compare
BBR_RS17380 +0.2 1.4 hypothetical protein compare
BBR_RS15975 +0.2 1.3 hypothetical protein compare
BBR_RS12625 +0.2 1.7 glycosyltransferase family 1 protein compare
BBR_RS12475 +0.2 1.2 heme utilization protein HutZ compare
BBR_RS15280 +0.2 1.2 hypothetical protein compare
BBR_RS21030 +0.2 1.3 hypothetical protein compare
BBR_RS20060 +0.2 1.6 DUF624 domain-containing protein compare
BBR_RS20070 +0.2 1.7 sugar ABC transporter permease compare
BBR_RS17025 +0.2 1.6 DUF2252 domain-containing protein compare
BBR_RS13530 +0.2 1.4 CrcB family protein compare
BBR_RS14670 +0.2 1.6 excinuclease ABC subunit UvrA compare
BBR_RS21100 +0.2 0.7 hypothetical protein compare
BBR_RS14040 +0.2 0.9 GNAT family N-acetyltransferase compare
BBR_RS20230 +0.2 1.9 hypothetical protein compare
BBR_RS15940 +0.2 0.9 hypothetical protein compare
BBR_RS19115 +0.2 0.7 hypothetical protein compare
BBR_RS17940 +0.2 1.2 large conductance mechanosensitive channel protein MscL compare
BBR_RS13505 +0.2 1.2 DUF4391 domain-containing protein compare
BBR_RS14300 +0.2 0.7 NUDIX hydrolase compare
BBR_RS21045 +0.2 1.0 hypothetical protein compare
BBR_RS20075 +0.2 1.8 LacI family transcriptional regulator compare
BBR_RS14320 +0.2 1.3 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS15855 +0.2 0.8 N-acetyltransferase compare
BBR_RS14520 +0.2 0.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BBR_RS14605 +0.2 1.7 ABC transporter permease compare
BBR_RS15190 +0.2 1.0 NAD(P) transhydrogenase subunit alpha compare
BBR_RS14895 +0.2 1.3 DUF47 domain-containing protein compare
BBR_RS20155 +0.2 1.9 sugar ABC transporter permease compare
BBR_RS17875 +0.2 1.3 glucan 1,3-beta-glucosidase compare
BBR_RS15410 +0.2 0.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
BBR_RS14365 +0.2 1.1 hypothetical protein compare
BBR_RS17520 +0.2 1.0 hypothetical protein compare
BBR_RS13700 +0.2 1.4 diaminopimelate epimerase compare
BBR_RS15260 +0.2 1.2 glutamate synthase subunit beta compare
BBR_RS14345 +0.2 1.2 hypothetical protein compare
BBR_RS10430 +0.2 1.7 LacI family transcriptional regulator compare
BBR_RS16365 +0.2 1.6 alpha-mannosidase compare
BBR_RS17225 +0.2 1.6 MFS transporter compare
BBR_RS14420 +0.2 0.6 ribosome silencing factor compare
BBR_RS15460 +0.2 0.7 hypothetical protein compare
BBR_RS18560 +0.2 1.4 hypothetical protein compare
BBR_RS18555 +0.2 1.5 NlpC/P60 family protein compare
BBR_RS17260 +0.2 1.0 Sucrose permease compare
BBR_RS18660 +0.2 1.7 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase compare
BBR_RS13315 +0.2 1.2 hypothetical protein compare
BBR_RS16375 +0.2 1.6 alpha-mannosidase compare
BBR_RS16580 +0.2 1.1 EamA/RhaT family transporter compare
BBR_RS15370 +0.2 0.6 macro domain-containing protein compare
BBR_RS18335 +0.2 1.4 hypothetical protein compare
BBR_RS15895 +0.2 1.0 hypothetical protein compare
BBR_RS16205 +0.2 1.3 type II restriction-modification system restriction subunit, PstI isoschizomer compare
BBR_RS16195 +0.2 0.7 hypothetical protein compare
BBR_RS21025 +0.2 0.9 hypothetical protein compare
BBR_RS17060 +0.2 1.2 acylphosphatase compare
BBR_RS11355 +0.2 1.0 hypothetical protein compare
BBR_RS13430 +0.2 1.1 hypothetical protein compare
BBR_RS18110 +0.2 0.9 peptide deformylase compare
BBR_RS15885 +0.2 1.1 histidine kinase compare
BBR_RS21055 +0.2 0.6 hypothetical protein compare
BBR_RS15380 +0.2 1.1 thiaminase II compare
BBR_RS17590 +0.2 0.7 PTS sugar transporter subunit IIA compare
BBR_RS12715 +0.2 0.8 helix-turn-helix domain-containing protein compare
BBR_RS17525 +0.2 1.4 hypothetical protein compare
BBR_RS17085 +0.2 1.3 KR domain-containing protein compare
BBR_RS15395 +0.2 1.2 tRNA (adenine-N1)-methyltransferase compare
BBR_RS20665 +0.2 0.7 hypothetical protein compare
BBR_RS14775 +0.2 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress (R)-2-Hydroxybutyrate across organisms