Experiment set4IT042 for Burkholderia phytofirmans PsJN

Compare to:

Min media with glucose

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02610 -6.9 -4.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17685 -6.9 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17395 -6.6 -2.7 anthranilate synthase subunit II compare
BPHYT_RS17675 -6.5 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS13705 -6.3 -4.4 chorismate synthase compare
BPHYT_RS33900 -6.3 -10.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS33865 -6.1 -8.4 tryptophan synthase alpha chain compare
BPHYT_RS09500 -6.0 -4.2 glucose-6-phosphate isomerase compare
BPHYT_RS03480 -5.9 -9.0 ferritin compare
BPHYT_RS33835 -5.8 -7.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17890 -5.8 -3.9 shikimate kinase compare
BPHYT_RS15915 -5.7 -10.3 ornithine carbamoyltransferase compare
BPHYT_RS17670 -5.7 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16735 -5.6 -6.7 phosphogluconate dehydratase compare
BPHYT_RS17855 -5.6 -15.4 glutamate synthase compare
BPHYT_RS15920 -5.6 -12.0 argininosuccinate synthase compare
BPHYT_RS33875 -5.6 -10.0 tryptophan synthase subunit alpha compare
BPHYT_RS14845 -5.6 -5.4 cysteine synthase compare
BPHYT_RS04725 -5.6 -9.3 sulfite reductase compare
BPHYT_RS03150 -5.6 -15.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -5.4 -9.0 phosphoserine aminotransferase compare
BPHYT_RS33880 -5.3 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS12985 -5.3 -3.6 amino acid acetyltransferase compare
BPHYT_RS33645 -5.2 -8.7 homoserine kinase compare
BPHYT_RS09515 -5.2 -5.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14195 -5.2 -3.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS05010 -5.2 -6.1 RpiR family transcriptional regulator compare
BPHYT_RS16835 -5.2 -7.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17390 -5.1 -16.3 anthranilate synthase subunit I compare
BPHYT_RS16255 -5.0 -4.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16270 -5.0 -4.6 phosphoglycerate kinase compare
BPHYT_RS16245 -4.9 -6.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS05225 -4.9 -8.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS02590 -4.9 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18320 -4.9 -15.2 orotate phosphoribosyltransferase compare
BPHYT_RS14910 -4.8 -9.4 chorismate mutase compare
BPHYT_RS04740 -4.8 -8.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS06545 -4.8 -12.1 acetolactate synthase compare
BPHYT_RS08955 -4.7 -6.5 homoserine dehydrogenase compare
BPHYT_RS03640 -4.7 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06405 -4.7 -6.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS14190 -4.7 -10.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17690 -4.6 -13.0 imidazole glycerol phosphate synthase compare
BPHYT_RS33840 -4.5 -8.2 amidophosphoribosyltransferase compare
BPHYT_RS17400 -4.5 -7.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS33915 -4.5 -8.3 isopropylmalate isomerase compare
BPHYT_RS04965 -4.4 -11.0 ATP-binding protein compare
BPHYT_RS17700 -4.4 -5.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17885 -4.4 -5.9 3-dehydroquinate synthase compare
BPHYT_RS14855 -4.3 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04955 -4.3 -2.9 methionyl-tRNA synthetase compare
BPHYT_RS06610 -4.3 -3.4 triosephosphate isomerase compare
BPHYT_RS17405 -4.2 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS14895 -4.2 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06555 -4.2 -8.1 ketol-acid reductoisomerase compare
BPHYT_RS16840 -4.1 -3.9 transketolase compare
BPHYT_RS12845 -4.0 -14.1 ATPase compare
BPHYT_RS01595 -4.0 -9.3 homoserine O-acetyltransferase compare
BPHYT_RS17715 -4.0 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06175 -3.9 -8.2 LPS biosynthesis compare
BPHYT_RS01590 -3.9 -8.3 methionine biosynthesis protein MetW compare
BPHYT_RS15075 -3.8 -3.9 dihydrokaempferol 4-reductase compare
BPHYT_RS06045 -3.8 -9.7 transaldolase compare
BPHYT_RS03535 -3.8 -6.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12530 -3.8 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS05020 -3.7 -6.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06900 -3.7 -7.8 aspartate aminotransferase compare
BPHYT_RS08565 -3.7 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS04720 -3.6 -4.4 transcriptional regulator compare
BPHYT_RS16905 -3.6 -5.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12840 -3.6 -6.4 pyruvate dehydrogenase compare
BPHYT_RS08960 -3.4 -2.8 threonine synthase compare
BPHYT_RS03725 -3.3 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS05030 -3.2 -5.0 sugar ABC transporter permease compare
BPHYT_RS33920 -3.2 -11.1 type II citrate synthase compare
BPHYT_RS04730 -3.1 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS05960 -3.1 -8.1 endoribonuclease L-PSP compare
BPHYT_RS16675 -3.1 -3.5 dihydroorotase compare
BPHYT_RS08850 -3.0 -3.2 transcriptional regulator compare
BPHYT_RS10100 -3.0 -4.9 dihydroxy-acid dehydratase compare
BPHYT_RS05040 -2.9 -6.7 sugar ABC transporter ATPase compare
BPHYT_RS03625 -2.9 -12.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS23650 -2.7 -1.5 hypothetical protein compare
BPHYT_RS05035 -2.7 -5.6 sugar ABC transporter permease compare
BPHYT_RS04745 -2.6 -4.5 sulfate adenylyltransferase compare
BPHYT_RS06685 -2.4 -3.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13220 -2.4 -10.7 phosphomethylpyrimidine synthase compare
BPHYT_RS18705 -2.4 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS14865 -2.3 -6.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03495 -2.3 -6.5 hypothetical protein compare
BPHYT_RS02905 -2.3 -16.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS12465 -2.2 -3.8 inositol monophosphatase compare
BPHYT_RS17380 -2.1 -10.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS05025 -2.1 -4.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS09145 -2.1 -8.4 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS17520 -2.0 -7.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06375 -2.0 -5.4 ribonuclease compare
BPHYT_RS15670 -1.8 -7.0 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS09895 -1.8 -1.7 LysR family transcriptional regulator compare
BPHYT_RS12150 -1.8 -12.1 PII uridylyl-transferase compare
BPHYT_RS02570 -1.8 -3.3 phosphocarrier protein HPr compare
BPHYT_RS03400 -1.7 -1.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS33150 -1.7 -1.4 beta-lactamase compare
BPHYT_RS16500 -1.7 -7.8 MIP family channel protein compare
BPHYT_RS18340 -1.7 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS33905 -1.7 -0.9 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS08950 -1.7 -5.0 aminotransferase compare
BPHYT_RS14900 -1.6 -2.9 prephenate dehydrogenase compare
BPHYT_RS05730 -1.6 -3.2 hypothetical protein compare
BPHYT_RS04920 -1.6 -3.0 aspartate 1-decarboxylase compare
BPHYT_RS03645 -1.6 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS01455 -1.5 -1.0 peptide deformylase compare
BPHYT_RS31320 -1.4 -2.3 hypothetical protein compare
BPHYT_RS18910 -1.4 -2.0 FlgN compare
BPHYT_RS16975 -1.4 -6.0 shikimate 5-dehydrogenase compare
BPHYT_RS10500 -1.4 -1.6 acetolactate synthase compare
BPHYT_RS36220 -1.3 -1.5 hypothetical protein compare
BPHYT_RS12940 -1.3 -4.9 signal transduction histidine kinase compare
BPHYT_RS07515 -1.3 -2.4 photosystem reaction center subunit H compare
BPHYT_RS11795 -1.3 -1.5 membrane protein compare
BPHYT_RS12935 -1.3 -7.0 chemotaxis protein CheY compare
BPHYT_RS17095 -1.3 -2.7 proline--tRNA ligase compare
BPHYT_RS33870 -1.3 -4.0 DNA methylase N-4 compare
BPHYT_RS04750 -1.3 -3.4 uroporphyrin-III C-methyltransferase compare
BPHYT_RS14550 -1.3 -1.2 tRNA-Asn compare
BPHYT_RS11960 -1.3 -1.3 MarR family transcriptional regulator compare
BPHYT_RS17920 -1.2 -1.7 protein CyaY compare
BPHYT_RS09465 -1.2 -2.1 transcriptional regulator compare
BPHYT_RS15570 -1.2 -5.4 NAD-dependent dehydratase compare
BPHYT_RS03570 -1.2 -6.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS35885 -1.2 -4.5 hypothetical protein compare
BPHYT_RS14185 -1.1 -2.3 transcription elongation factor GreA compare
BPHYT_RS03730 -1.1 -1.9 transcriptional repressor NrdR compare
BPHYT_RS06470 -1.1 -0.9 membrane protein compare
BPHYT_RS31060 -1.1 -1.2 capsular polysaccharide biosynthesis protein compare
BPHYT_RS26750 -1.1 -2.5 aldolase compare
BPHYT_RS05620 -1.1 -1.5 CsbD family protein compare
BPHYT_RS05365 -1.1 -1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS04820 -1.1 -4.0 LysR family transcriptional regulator compare
BPHYT_RS22470 -1.1 -1.6 hydrolase compare
BPHYT_RS14400 -1.1 -2.7 anti-sigma factor compare
BPHYT_RS16335 -1.1 -1.3 membrane protein compare
BPHYT_RS09155 -1.1 -3.9 3-ketoacyl-ACP reductase compare
BPHYT_RS15620 -1.1 -3.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16340 -1.1 -5.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16490 -1.1 -3.2 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS06410 -1.1 -2.2 transcriptional regulator compare
BPHYT_RS22295 -1.1 -1.2 LysR family transcriptional regulator compare
BPHYT_RS01485 -1.1 -1.1 histidine kinase compare
BPHYT_RS11075 -1.0 -1.5 membrane protein compare
BPHYT_RS07080 -1.0 -2.0 glutathione S-transferase compare
BPHYT_RS12990 -1.0 -2.7 iron transporter compare
BPHYT_RS19325 -1.0 -2.0 glycine cleavage system H protein compare
BPHYT_RS17100 -1.0 -4.5 RNA pyrophosphohydrolase compare
BPHYT_RS16495 -1.0 -6.2 glycerol kinase compare
BPHYT_RS01660 -1.0 -2.3 hypothetical protein compare
BPHYT_RS23850 -1.0 -2.1 ser/threonine protein phosphatase compare
BPHYT_RS02975 -1.0 -2.5 membrane protein compare
BPHYT_RS27495 -1.0 -0.9 hypothetical protein compare
BPHYT_RS13540 -1.0 -6.3 LysR family transcriptional regulator compare
BPHYT_RS20440 -1.0 -1.5 IclR family transcriptional regulator compare
BPHYT_RS30775 -1.0 -1.5 gluconate 2-dehydrogenase compare
BPHYT_RS25935 -1.0 -2.5 type III secretion protein compare
BPHYT_RS02865 -1.0 -2.0 hypothetical protein compare
BPHYT_RS10670 -0.9 -1.2 catechol 1,2-dioxygenase compare
BPHYT_RS03900 -0.9 -0.8 phospholipid-binding protein compare
BPHYT_RS14740 -0.9 -5.0 threonine-phosphate decarboxylase compare
BPHYT_RS14920 -0.9 -1.4 hypothetical protein compare
BPHYT_RS36275 -0.9 -1.4 hypothetical protein compare
BPHYT_RS33580 -0.9 -3.3 geranyltranstransferase compare
BPHYT_RS23230 -0.9 -0.7 histidine kinase compare
BPHYT_RS33170 -0.9 -2.7 acetyltransferase compare
BPHYT_RS22125 -0.9 -2.2 hypothetical protein compare
BPHYT_RS31125 -0.9 -2.9 hypothetical protein compare
BPHYT_RS28075 -0.9 -0.8 cytochrome B561 compare
BPHYT_RS23940 -0.9 -1.2 GntR family transcriptional regulator compare
BPHYT_RS31890 -0.9 -1.0 transposase compare
BPHYT_RS14755 -0.9 -2.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS19565 -0.9 -5.4 gamma-glutamyl:cysteine ligase compare
BPHYT_RS33060 -0.9 -1.5 hypothetical protein compare
BPHYT_RS09330 -0.9 -6.2 phytoene synthase compare
BPHYT_RS12640 -0.9 -4.2 phosphoesterase compare
BPHYT_RS28705 -0.9 -1.1 IclR family transcriptional regulator compare
BPHYT_RS08335 -0.9 -1.2 hypothetical protein compare
BPHYT_RS24685 -0.8 -1.3 LysR family transcriptional regulator compare
BPHYT_RS07255 -0.8 -1.8 4-oxalocrotonate decarboxylase compare
BPHYT_RS12725 -0.8 -6.3 regulator compare
BPHYT_RS08885 -0.8 -4.2 inorganic phosphate transporter compare
BPHYT_RS17445 -0.8 -2.6 GTP-binding protein YchF compare
BPHYT_RS11825 -0.8 -0.9 cytosine deaminase compare
BPHYT_RS28965 -0.8 -1.0 hypothetical protein compare
BPHYT_RS21625 -0.8 -0.9 LysR family transcriptional regulator compare
BPHYT_RS07060 -0.8 -2.2 aldo/keto reductase compare
BPHYT_RS21770 -0.8 -2.1 aldehyde dehydrogenase compare
BPHYT_RS10165 -0.8 -1.5 transcriptional regulator compare
BPHYT_RS35205 -0.8 -2.6 hypothetical protein compare
BPHYT_RS13470 -0.8 -0.8 arylsulfate sulfotransferase compare
BPHYT_RS06075 -0.8 -3.3 hypothetical protein compare
BPHYT_RS09160 -0.8 -2.8 polyhydroxyalkanoate synthesis repressor PhaR compare


Specific Phenotypes

For 1 genes in this experiment