Experiment set4IT041 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Vanillin 1.25 mM

200 most important genes:

  gene name fitness t score description  
AO356_06575 -2.9 -2.8 outer membrane protein assembly factor BamB compare
AO356_16600 -2.9 -2.7 malate:quinone oxidoreductase compare
AO356_21125 -2.8 -3.8 cyclic peptide transporter compare
AO356_15165 -2.7 -3.1 protein cII compare
AO356_17065 -2.6 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_05670 -2.6 -3.8 recombinase RecA compare
AO356_14505 -2.4 -3.2 peptidase M23 compare
AO356_02265 -2.3 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_17075 -2.3 -3.1 cytochrome C compare
AO356_12515 -2.1 -5.6 exodeoxyribonuclease III compare
AO356_02190 -2.0 -7.4 hypothetical protein compare
AO356_06965 -2.0 -8.4 histidinol dehydrogenase compare
AO356_10185 -2.0 -8.3 glutamate--cysteine ligase compare
AO356_09800 -2.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_20175 -1.9 -1.3 3-oxoacyl-ACP synthase compare
AO356_01750 -1.9 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_08930 -1.9 -2.8 heptose kinase compare
AO356_02800 -1.7 -3.1 transporter compare
AO356_09540 -1.7 -1.6 twin-arginine protein translocation system subunit TatC compare
AO356_11420 -1.7 -8.7 histidine kinase compare
AO356_02250 -1.7 -7.5 pyridine nucleotide-disulfide oxidoreductase compare
AO356_26645 -1.7 -1.5 crotonase compare
AO356_06995 -1.7 -5.3 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_02465 -1.7 -2.6 carbonate dehydratase compare
AO356_01745 -1.6 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_11610 -1.6 -2.1 glycerol acyltransferase compare
AO356_09810 -1.6 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
AO356_20830 -1.6 -2.5 phosphoadenosine phosphosulfate reductase compare
AO356_07910 -1.6 -1.8 exodeoxyribonuclease V subunit alpha compare
AO356_27180 -1.5 -4.0 hypothetical protein compare
AO356_06990 -1.5 -4.5 toluene tolerance protein compare
AO356_15325 -1.5 -1.8 hypothetical protein compare
AO356_11025 -1.5 -5.3 transcriptional regulator PhoU compare
AO356_00385 -1.5 -2.2 peptidylprolyl isomerase compare
AO356_12380 -1.4 -6.2 ATP-dependent DNA helicase RecG compare
AO356_19090 -1.4 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_17070 -1.4 -2.2 cytochrome B compare
AO356_04570 -1.4 -6.7 RNA polymerase subunit sigma compare
AO356_08235 -1.3 -6.6 histidine kinase compare
AO356_09795 -1.3 -0.9 imidazole glycerol phosphate synthase subunit HisF compare
AO356_09815 -1.3 -4.7 imidazoleglycerol-phosphate dehydratase compare
AO356_12725 -1.2 -4.1 recombinase XerC compare
AO356_04885 -1.2 -5.8 multidrug transporter compare
AO356_13395 -1.2 -2.0 non-canonical purine NTP pyrophosphatase compare
AO356_01740 -1.2 -3.1 DNA-binding protein compare
AO356_07110 -1.2 -4.2 ribonuclease G compare
AO356_29515 -1.2 -2.1 energy transducer TonB compare
AO356_29755 -1.2 -2.5 hypothetical protein compare
AO356_03800 -1.1 -1.6 histidine kinase compare
AO356_03725 -1.1 -1.3 histidine kinase compare
AO356_11315 -1.1 -1.6 shikimate dehydrogenase compare
AO356_28695 -1.1 -2.2 IclR family transcriptional regulator compare
AO356_22095 -1.1 -4.4 cupin compare
AO356_00170 -1.1 -2.6 lytic transglycosylase compare
AO356_16450 -1.1 -2.7 GTP-binding protein compare
AO356_11400 -1.1 -5.4 glutamate:protein symporter compare
AO356_08610 -1.1 -5.3 exoribonuclease R compare
AO356_09520 -1.0 -3.4 phosphoribosyl-AMP cyclohydrolase compare
AO356_03305 -1.0 -2.1 ATPase compare
AO356_21795 -1.0 -2.1 PBS lyase compare
AO356_19420 -1.0 -1.8 septum formation inhibitor compare
AO356_22125 -1.0 -4.6 isocitrate dehydrogenase compare
AO356_02310 -1.0 -3.1 PasA protein compare
AO356_06385 -1.0 -2.5 recombinase XerD compare
AO356_17345 -1.0 -2.4 molybdenum cofactor biosynthesis protein MoaE compare
AO356_19080 -1.0 -6.5 dehydrogenase compare
AO356_12900 -1.0 -2.7 exopolyphosphatase compare
AO356_18115 -0.9 -5.0 transporter compare
AO356_11680 -0.9 -2.0 chromosome partitioning protein ParB compare
AO356_14295 -0.9 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_06960 -0.9 -4.0 histidinol-phosphate aminotransferase compare
AO356_02305 -0.9 -2.2 hypothetical protein compare
AO356_23645 -0.9 -1.6 hypothetical protein compare
AO356_18025 -0.9 -1.3 ATP-dependent DNA helicase RuvB compare
AO356_25580 -0.9 -2.6 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
AO356_17485 -0.9 -3.2 elongation factor 4 compare
AO356_27170 -0.9 -2.2 XRE family transcriptional regulator compare
AO356_23400 -0.9 -1.7 phosphonate ABC transporter compare
AO356_18960 -0.9 -3.2 hypothetical protein compare
AO356_25260 -0.9 -1.4 iron transporter compare
AO356_26040 -0.9 -1.1 hypothetical protein compare
AO356_08910 -0.9 -3.0 carbamoyltransferase compare
AO356_12640 -0.9 -1.9 cytochrome C compare
AO356_20395 -0.9 -2.1 acetyl-CoA acetyltransferase compare
AO356_16070 -0.8 -3.6 poly(A) polymerase compare
AO356_13685 -0.8 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_06360 -0.8 -1.3 hypothetical protein compare
AO356_24550 -0.8 -1.5 hypothetical protein compare
AO356_13445 -0.8 -1.3 dihydroorotase compare
AO356_02425 -0.8 -5.0 cytochrome C oxidase Cbb3 compare
AO356_10880 -0.8 -1.0 hypothetical protein compare
AO356_12610 -0.8 -1.5 Fe-S oxidoreductase compare
AO356_01755 -0.8 -1.4 trigger factor compare
AO356_20475 -0.8 -1.6 hypothetical protein compare
AO356_00995 -0.8 -3.2 carbon storage regulator CsrA compare
AO356_07105 -0.8 -3.8 hypothetical protein compare
AO356_03400 -0.8 -2.7 aminotransferase DegT compare
AO356_01570 -0.8 -3.3 hydroxymethylglutaryl-CoA lyase compare
AO356_13275 -0.8 -1.4 multidrug transporter compare
AO356_26615 -0.8 -2.7 hypothetical protein compare
AO356_22825 -0.8 -1.3 transcriptional regulator compare
AO356_02460 -0.8 -1.4 hypothetical protein compare
AO356_07915 -0.8 -1.6 exodeoxyribonuclease V subunit beta compare
AO356_20550 -0.7 -2.8 phage tail protein compare
AO356_08660 -0.7 -4.1 tRNA dimethylallyltransferase compare
AO356_27245 -0.7 -2.0 hypothetical protein compare
AO356_17555 -0.7 -1.8 GntR family transcriptional regulator compare
AO356_17985 -0.7 -3.1 cold-shock protein compare
AO356_14335 -0.7 -2.3 rRNA methyltransferase compare
AO356_26285 -0.7 -1.2 sugar ABC transporter substrate-binding protein compare
AO356_04235 -0.7 -1.7 LysR family transcriptional regulator compare
AO356_08585 -0.7 -2.0 50S ribosomal protein L9 compare
AO356_04880 -0.7 -5.8 multidrug transporter compare
AO356_07600 -0.7 -1.7 hypothetical protein compare
AO356_27405 -0.7 -1.9 MarR family transcriptional regulator compare
AO356_16955 -0.7 -3.1 disulfide bond formation protein B compare
AO356_24430 -0.7 -2.5 lysine transporter LysE compare
AO356_02440 -0.7 -4.2 cytochrome C oxidase Cbb3 compare
AO356_07000 -0.7 -1.6 ABC transporter permease compare
AO356_13605 -0.7 -4.5 5,10-methylenetetrahydrofolate reductase compare
AO356_19730 -0.7 -1.0 hypothetical protein compare
AO356_24780 -0.7 -2.0 type II secretion system protein GspL compare
AO356_25130 -0.7 -1.2 hypothetical protein compare
AO356_15420 -0.7 -2.5 hypothetical protein compare
AO356_13655 -0.7 -2.5 hypothetical protein compare
AO356_26660 -0.7 -1.5 carbon monoxide dehydrogenase compare
AO356_17515 -0.7 -4.7 murein transglycosylase compare
AO356_15140 -0.7 -1.2 homoserine dehydrogenase compare
AO356_02580 -0.7 -2.1 GntR family transcriptional regulator compare
AO356_13120 -0.7 -2.1 aliphatic sulfonate ABC transporter ATP-binding protein compare
AO356_26720 -0.7 -2.5 hydroxyacid dehydrogenase compare
AO356_28160 -0.6 -1.3 hypothetical protein compare
AO356_17035 -0.6 -2.5 ATPase compare
AO356_17505 -0.6 -2.5 DNA repair protein RecO compare
AO356_17090 -0.6 -2.6 phospholipid-binding protein compare
AO356_29105 -0.6 -1.6 fumarylacetoacetate hydrolase compare
AO356_15750 -0.6 -1.5 hypothetical protein compare
AO356_00870 -0.6 -1.0 tRNA-Pro compare
AO356_08895 -0.6 -0.4 GlcNAc-PI de-N-acetylase compare
AO356_01410 -0.6 -1.4 hypothetical protein compare
AO356_03405 -0.6 -1.4 serine acetyltransferase compare
AO356_27985 -0.6 -1.0 sorbitol dehydrogenase compare
AO356_04875 -0.6 -3.4 antibiotic transporter compare
AO356_14020 -0.6 -1.1 hypothetical protein compare
AO356_25420 -0.6 -1.4 chemotaxis protein CheY compare
AO356_13475 -0.6 -2.7 glutathione synthetase compare
AO356_02070 -0.6 -2.0 phage tail protein compare
AO356_23805 -0.6 -2.2 hypothetical protein compare
AO356_09780 -0.6 -2.3 peptidase S41 compare
AO356_19285 -0.6 -0.8 tRNA-Asp compare
AO356_24645 -0.6 -2.3 hypothetical protein compare
AO356_24455 -0.6 -3.3 ABC transporter permease compare
AO356_21790 -0.6 -1.3 sulfonate ABC transporter ATP-binding protein compare
AO356_21275 -0.6 -0.6 peptidase compare
AO356_11990 -0.6 -4.5 DNA helicase II compare
AO356_22950 -0.6 -1.1 peptidylprolyl isomerase compare
AO356_25390 -0.6 -1.1 enamine deaminase RidA compare
AO356_18775 -0.6 -1.6 aspartate kinase compare
AO356_27225 -0.6 -3.0 polyketide cyclase compare
AO356_29590 -0.6 -1.5 ester cyclase compare
AO356_16060 -0.6 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_06860 -0.6 -2.6 D-ala-D-ala transporter subunit compare
AO356_11045 -0.6 -4.3 phosphate-binding protein compare
AO356_03495 -0.6 -1.3 phosphoglycolate phosphatase compare
AO356_11030 -0.6 -4.4 phosphate ABC transporter ATP-binding protein compare
AO356_01275 -0.6 -2.9 GntR family transcriptional regulator compare
AO356_18020 -0.6 -1.5 ATP-dependent DNA helicase RuvA compare
AO356_03360 -0.6 -1.2 hypothetical protein compare
AO356_04550 -0.6 -1.6 response regulator SirA compare
AO356_24485 -0.6 -1.3 SAM-dependent methyltransferase compare
AO356_14145 -0.6 -2.7 transporter compare
AO356_08985 -0.6 -0.8 hypothetical protein compare
AO356_10445 -0.6 -1.0 serine protease compare
AO356_25995 -0.6 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_07480 -0.6 -1.6 carbamoyl phosphate synthase large subunit compare
AO356_25525 -0.6 -2.6 moaF compare
AO356_02025 -0.6 -1.6 hypothetical protein compare
AO356_16320 -0.6 -1.7 hypothetical protein compare
AO356_28120 -0.6 -1.4 NosL protein compare
AO356_20920 -0.6 -1.8 peptidase compare
AO356_23990 -0.6 -1.1 amino acid ABC transporter compare
AO356_23540 -0.6 -2.0 GntR family transcriptional regulator compare
AO356_23595 -0.6 -1.0 short-chain dehydrogenase compare
AO356_14140 -0.6 -4.0 8-amino-7-oxononanoate synthase compare
AO356_18855 -0.6 -1.1 hypothetical protein compare
AO356_05895 -0.6 -2.7 protein-L-isoaspartate O-methyltransferase compare
AO356_17575 -0.6 -1.6 hypothetical protein compare
AO356_08925 -0.6 -2.0 lipopolysaccharide kinase compare
AO356_01545 -0.6 -0.9 hypothetical protein compare
AO356_21460 -0.6 -1.2 colicin V production CvpA compare
AO356_07795 -0.5 -2.8 sulfate transporter compare
AO356_15925 -0.5 -1.9 ribosomal large subunit pseudouridine synthase D compare
AO356_20915 -0.5 -1.4 thiamine pyrophosphate-binding protein compare
AO356_26760 -0.5 -2.1 ABC transporter permease compare
AO356_06650 -0.5 -1.5 transcriptional regulator compare
AO356_09775 -0.5 -3.4 peptidase M23 compare
AO356_02720 -0.5 -1.2 type III secretion protein compare
AO356_13320 -0.5 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_29095 -0.5 -2.3 cyclase compare
AO356_23500 -0.5 -2.9 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in stress experiments

For stress Vanillin across organisms