Experiment set4IT041 for Rhodospirillum rubrum S1H

Compare to:

L-Malic Acid carbon source and N2; anaerobic; high light

200 most important genes:

  gene name fitness t score description  
Rru_A1048 -6.6 -3.7 Protein of unknown function DUF465 (NCBI) compare
Rru_A1895 -5.7 -1.7 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A1620 -5.1 -3.5 hypothetical protein (NCBI) compare
Rru_A1239 -5.0 -2.9 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A1883 -4.8 -8.2 Magnesium and cobalt transport protein CorA (NCBI) compare
Rru_A0619 -4.8 -3.6 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A2885 -4.7 -20.9 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A0615 -4.7 -5.3 photosynthetic complex assembly protein (NCBI) compare
Rru_A1896 -4.6 -9.9 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A1105 -4.6 -11.8 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A2886 -4.6 -30.5 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A2983 -4.5 -3.1 Polyprenyl synthetase (NCBI) compare
Rru_A1191 -4.4 -14.4 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A3267 -4.4 -10.9 Methionine biosynthesis MetW (NCBI) compare
Rru_A1897 -4.4 -7.7 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A1827 -4.3 -17.4 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A1190 -4.3 -1.7 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A1021 -4.3 -9.8 Sigma 32 (RpoH) (NCBI) compare
Rru_A3751 -4.3 -14.0 Argininosuccinate synthase (NCBI) compare
Rru_A0574 -4.3 -4.6 Carboxylyase-related protein (NCBI) compare
Rru_A0469 -4.3 -23.5 Ketol-acid reductoisomerase (NCBI) compare
Rru_A1928 -4.3 -18.1 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A1675 -4.2 -19.9 Cytochrome c assembly protein (NCBI) compare
Rru_A3594 -4.1 -4.9 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0432 -4.1 -7.2 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A3266 -4.0 -16.1 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3380 -4.0 -3.4 hypothetical protein (NCBI) compare
Rru_A3428 -4.0 -11.9 Tryptophan synthase (NCBI) compare
Rru_A3548 -4.0 -20.8 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A1189 -4.0 -15.5 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A3162 -3.9 -17.3 Prephenate dehydratase (NCBI) compare
Rru_A3264 -3.9 -12.2 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3425 -3.8 -7.3 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A3427 -3.8 -20.0 Tryptophan synthase, beta chain (NCBI) compare
Rru_A1530 -3.8 -25.9 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A0467 -3.8 -17.3 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A0486 -3.7 -12.0 von Willebrand factor, type A (NCBI) compare
Rru_A0621 -3.7 -22.9 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2974 -3.7 -14.1 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A3227 -3.7 -11.2 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A2981 -3.7 -11.4 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A2975 -3.6 -19.0 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A0620 -3.6 -12.2 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2980 -3.6 -15.7 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A2771 -3.5 -6.8 Histidinol dehydrogenase (NCBI) compare
Rru_A1837 -3.5 -6.5 Porphobilinogen synthase (NCBI) compare
Rru_A2507 -3.5 -20.6 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A0032 -3.5 -12.8 TPR repeat (NCBI) compare
Rru_A1593 -3.5 -12.9 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A2979 -3.5 -13.6 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A2167 -3.5 -6.8 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0618 -3.5 -14.3 PUCC protein (NCBI) compare
Rru_A2936 -3.4 -10.5 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A0627 -3.4 -17.1 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A0514 -3.4 -8.5 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A1854 -3.4 -8.2 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A1786 -3.4 -18.5 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A3214 -3.4 -14.4 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A2978 -3.4 -13.1 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0058 -3.4 -1.1 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A0493 -3.4 -17.5 Phytoene desaturase (NCBI) compare
Rru_A0622 -3.3 -14.3 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A2772 -3.3 -3.8 ATP phosphoribosyltransferase (NCBI) compare
Rru_A2286 -3.3 -16.8 Nitrogenase MoFe cofactor biosynthesis protein NifE (NCBI) compare
Rru_A1437 -3.3 -9.0 Sodium:dicarboxylate symporter (NCBI) compare
Rru_A3558 -3.3 -5.4 Protein of unknown function UPF0005 (NCBI) compare
Rru_A0617 -3.3 -9.0 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A0397 -3.3 -6.4 Argininosuccinate lyase (NCBI) compare
Rru_A1012 -3.3 -14.8 Nitrogenase molybdenum-iron protein beta chain (NCBI) compare
Rru_A2512 -3.3 -8.2 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A0485 -3.2 -7.8 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A2265 -3.2 -16.3 Electron transfer flavoprotein-ubiquinone oxidoreductase (NCBI) compare
Rru_A2497 -3.2 -7.1 Peptide chain release factor 3 (NCBI) compare
Rru_A0770 -3.2 -12.8 Peptidase M23B (NCBI) compare
Rru_A3191 -3.2 -16.5 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A3276 -3.1 -3.5 Ornithine carbamoyltransferase (NCBI) compare
Rru_A2182 -3.1 -7.2 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A0624 -3.1 -12.1 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A3202 -3.0 -9.7 DNA topoisomerase (NCBI) compare
Rru_A2285 -3.0 -1.5 Nitrogenase molybdenum-iron cofactor biosynthesis protein (NCBI) compare
Rru_A2266 -3.0 -19.4 Electron transfer flavoprotein (NCBI) compare
Rru_A1678 -3.0 -5.5 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare
Rru_A1691 -3.0 -13.9 Spermine synthase (NCBI) compare
Rru_A1010 -2.9 -13.5 Nitrogenase iron protein (NCBI) compare
Rru_A1366 -2.9 -19.7 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A1527 -2.9 -9.0 ABC transporter component (NCBI) compare
Rru_A3277 -2.9 -5.1 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A0494 -2.9 -11.8 Squalene/phytoene synthase (NCBI) compare
Rru_A1695 -2.9 -6.2 Protein of unknown function DUF411 (NCBI) compare
Rru_A1011 -2.8 -14.8 Nitrogenase molybdenum-iron protein alpha chain (NCBI) compare
Rru_A0394 -2.8 -3.2 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0613 -2.8 -7.1 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A2847 -2.8 -3.1 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A2524 -2.8 -13.0 Peptidase U32 (NCBI) compare
Rru_A0670 -2.8 -3.1 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A0993 -2.8 -14.5 Transcriptional Regulator, NifA, Fis Family (NCBI) compare
Rru_A0556 -2.8 -14.3 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A2982 -2.8 -8.7 O-methyltransferase, family 2 (NCBI) compare
Rru_A2267 -2.8 -9.6 Electron transfer flavoprotein beta-subunit (NCBI) compare
Rru_A0614 -2.7 -10.0 hypothetical protein (NCBI) compare
Rru_A2989 -2.7 -6.9 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A2525 -2.7 -13.9 Peptidase U32 (NCBI) compare
Rru_A2115 -2.7 -8.7 Phosphoglucomutase/phosphomannomutase (NCBI) compare
Rru_A2181 -2.7 -18.2 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A0404 -2.7 -18.0 Amidophosphoribosyl transferase (NCBI) compare
Rru_A3596 -2.7 -5.3 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI) compare
Rru_A2183 -2.6 -13.9 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2986 -2.6 -7.8 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A2269 -2.5 -8.5 Pyruvate carboxyltransferase (NCBI) compare
Rru_A2510 -2.5 -1.7 hypothetical protein (NCBI) compare
Rru_A0291 -2.5 -3.4 hypothetical protein (NCBI) compare
Rru_A2264 -2.5 -7.4 ferredoxin (NCBI) compare
Rru_A3359 -2.5 -7.4 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A0468 -2.5 -4.2 Acetolactate synthase, small subunit (NCBI) compare
Rru_A1111 -2.5 -10.6 Pseudouridine synthase, RluD (NCBI) compare
Rru_A2988 -2.5 -4.9 Precorrin-6X reductase (NCBI) compare
Rru_A0616 -2.4 -7.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A1436 -2.4 -6.1 Histidine Kinase (NCBI) compare
Rru_A0207 -2.4 -4.3 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A2085 -2.4 -4.6 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A2992 -2.4 -4.9 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A1798 -2.4 -13.6 Type I secretion outer membrane protein, TolC (NCBI) compare
Rru_A1890 -2.4 -4.2 hypothetical protein (NCBI) compare
Rru_A3571 -2.3 -9.4 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) compare
Rru_A1804 -2.3 -8.4 N-acetyltransferase (NCBI) compare
Rru_A1435 -2.3 -6.6 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) compare
Rru_A0399 -2.3 -2.6 Phosphoesterase, PA-phosphatase related (NCBI) compare
Rru_A0181 -2.2 -3.9 hypothetical protein (NCBI) compare
Rru_A2496 -2.2 -2.9 Polysaccharide biosynthesis protein (NCBI) compare
Rru_A1607 -2.2 -15.7 4-alpha-glucanotransferase (NCBI) compare
Rru_A2244 -2.2 -12.5 Glycogen/starch/alpha-glucan phosphorylase (NCBI) compare
Rru_A3322 -2.2 -4.0 Transcriptional Regulator, Crp/Fnr family (NCBI) compare
Rru_A2990 -2.2 -9.8 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A2987 -2.2 -6.3 hypothetical protein (NCBI) compare
Rru_A0625 -2.1 -3.0 hypothetical protein (NCBI) compare
Rru_A3384 -2.1 -6.1 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3168 -2.1 -9.0 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A3397 -2.1 -1.3 hypothetical protein (NCBI) compare
Rru_A3167 -2.1 -10.1 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A3382 -2.1 -7.9 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A2100 -2.1 -8.1 Protein of unknown function DUF81 (NCBI) compare
Rru_A3739 -2.1 -5.6 hypothetical protein (NCBI) compare
Rru_A3169 -2.1 -11.6 ABC transporter component (NCBI) compare
Rru_A2370 -2.1 -1.1 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A2411 -2.0 -10.9 Aminotransferase, class I and II (NCBI) compare
Rru_A3052 -2.0 -5.7 hypothetical protein (NCBI) compare
Rru_A2985 -2.0 -9.9 Hydroxyneurosporene synthase (NCBI) compare
Rru_A3166 -2.0 -10.4 extracellular solute-binding protein, family 5 (NCBI) compare
Rru_A2161 -2.0 -16.9 Polyphosphate kinase (NCBI) compare
Rru_A3773 -2.0 -2.0 CBS domain protein (NCBI) compare
Rru_A3165 -1.9 -3.4 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A3190 -1.9 -1.8 Aspartate carbamoyltransferase (NCBI) compare
Rru_A2271 -1.9 -2.6 HesB/YadR/YfhF (NCBI) compare
Rru_A2246 -1.9 -12.2 Glucose-1-phosphate adenylyltransferase (NCBI) compare
Rru_A3539 -1.9 -7.6 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A3783 -1.9 -10.3 tRNA pseudouridine synthase B (NCBI) compare
Rru_A0629 -1.9 -9.9 Geranylgeranyl reductase (NCBI) compare
Rru_A2029 -1.9 -1.8 Serine O-acetyltransferase (NCBI) compare
Rru_A2952 -1.9 -4.0 Methyltransferase small (NCBI) compare
Rru_A3642 -1.9 -2.2 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A2469 -1.9 -3.9 FeoA (NCBI) compare
Rru_A1085 -1.8 -5.3 Metallophosphoesterase (NCBI) compare
Rru_A3366 -1.8 -11.3 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A0010 -1.8 -4.4 Sigma-54 (RpoN) (NCBI) compare
Rru_A3533 -1.8 -7.6 hypothetical protein (NCBI) compare
Rru_A0006 -1.8 -3.3 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A3009 -1.8 -4.8 Aminotransferase class-III (NCBI) compare
Rru_A0644 -1.8 -2.8 hypothetical protein (NCBI) compare
Rru_A1019 -1.8 -3.9 FAD dependent oxidoreductase (NCBI) compare
Rru_A1572 -1.8 -2.7 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A2486 -1.8 -4.1 Glucokinase (NCBI) compare
Rru_A0994 -1.8 -5.3 Nitrogenase cofactor biosynthesis protein NifB (NCBI) compare
Rru_A3424 -1.8 -1.9 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A1047 -1.7 -7.7 6-phosphofructokinase (NCBI) compare
Rru_A3766 -1.7 -5.3 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A2163 -1.7 -0.9 conserved hypothetical protein RP631 (NCBI) compare
Rru_A3492 -1.7 -9.6 Periplasmic Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A2549 -1.6 -7.1 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A2478 -1.6 -7.7 ArgK protein (NCBI) compare
Rru_A0683 -1.6 -0.6 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A2363 -1.6 -8.5 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A2110 -1.6 -6.6 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare
Rru_A3770 -1.6 -6.8 tRNA-i(6)A37 modification enzyme MiaB (NCBI) compare
Rru_A1868 -1.6 -8.7 Peptidase M23B (NCBI) compare
Rru_A1677 -1.6 -4.9 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A2109 -1.5 -10.2 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) compare
Rru_A3282 -1.5 -7.0 hypothetical protein (NCBI) compare
Rru_A1617 -1.5 -2.2 Protein of unknown function DUF1289 (NCBI) compare
Rru_A1911 -1.5 -4.9 Ferric uptake regulator (FUR) family (NCBI) compare
Rru_A1775 -1.5 -2.2 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A1015 -1.5 -2.9 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2193 -1.5 -9.8 Abc1 protein (NCBI) compare
Rru_A2513 -1.5 -8.3 Acetyl-CoA hydrolase/transferase (NCBI) compare
Rru_A0596 -1.5 -1.7 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A1529 -1.5 -5.6 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A1867 -1.5 -2.0 Protein of unknown function DUF583 (NCBI) compare
Rru_A2887 -1.4 -1.9 GreA/GreB family elongation factor (NCBI) compare
Rru_A2400 -1.4 -9.9 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A3547 -1.4 -3.4 hypothetical protein (NCBI) compare
Rru_A0296 -1.4 -5.3 hypothetical protein (NCBI) compare


Specific Phenotypes

For 4 genes in this experiment

For anaerboic nitrogen source N2 in Rhodospirillum rubrum S1H

For anaerboic nitrogen source N2 across organisms